Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_07790_v3 Cicer arietinum L. HOM05D004172 ORTHO05D006010 0.0e+00 1114.8 606 100.0
Medtr7g074060 Medicago truncatula HOM05D004172 ORTHO05D006010 4.4e-304 1047.3 607 90.6
Psat3g117200 Pisum sativum HOM05D004172 ORTHO05D006010 5.4e-302 1040.4 604 90.6
TPR.G24292 Trifolium pratense HOM05D004172 ORTHO05D006010 3.5e-301 1037.7 607 90.1
Lj1g0013582 Lotus japonicus HOM05D004172 ORTHO05D006010 8.3e-295 1016.5 607 87.5
Glyma.18G217100 Glycine max HOM05D004172 ORTHO05D006010 2.7e-293 1011.5 603 87.7
Glyma.09G271900 Glycine max HOM05D004172 ORTHO05D006010 3.6e-290 1001.1 603 87.1
Phvul.008G079500 Phaseolus vulgaris HOM05D004172 ORTHO05D006010 3.4e-288 994.6 603 86.1
VMungo1383G2431 Vigna mungo HOM05D004172 ORTHO05D006010 7.0e-286 986.9 603 84.9
arahy.Tifrunner.gnm1.ann1.VH0VRX Arachis hypogaea HOM05D004172 ORTHO05D006010 1.6e-285 985.7 606 85.6
arahy.Tifrunner.gnm1.ann1.SQ7DBT Arachis hypogaea HOM05D004172 ORTHO05D006010 2.7e-285 984.9 606 86.1
arahy.Tifrunner.gnm1.ann1.3N9KBA Arachis hypogaea HOM05D004172 ORTHO05D006010 7.8e-285 983.4 606 85.8
arahy.Tifrunner.gnm1.ann1.5JF3JJ Arachis hypogaea HOM05D004172 ORTHO05D006010 1.7e-284 982.2 606 86.1
Lalb_Chr07g0195761 Lupinus albus HOM05D004172 ORTHO05D006010 1.6e-277 959.1 604 83.3
Lalb_Chr01g0023931 Lupinus albus HOM05D004172 ORTHO05D006010 9.9e-272 939.9 605 82.0
Manes.09G122000 Manihot esculenta HOM05D004172 ORTHO05D006010 4.6e-269 931.0 596 81.0
Prupe.6G297500 Prunus persica HOM05D004172 ORTHO05D006010 3.0e-268 928.3 591 81.2
Manes.08G168300 Manihot esculenta HOM05D004172 ORTHO05D006010 8.6e-268 926.8 591 80.2
Phvul.010G059200 Phaseolus vulgaris HOM05D004172 ORTHO05D006010 1.1e-267 926.4 603 81.3
FAN09G2297 Fragaria x ananassa HOM05D004172 ORTHO05D006010 1.9e-267 925.6 591 81.6
RcHm_v2.0_Chr3g0459921 Rosa chinensis HOM05D004172 ORTHO05D006010 1.9e-267 925.6 592 81.8
MD04G1177600 Malus domestica HOM05D004172 ORTHO05D006010 2.5e-267 925.2 597 80.2
MD12G1192900 Malus domestica HOM05D004172 ORTHO05D006010 5.6e-267 924.1 591 80.9
FvH4_6g09450 Fragaria vesca HOM05D004172 ORTHO05D006010 2.1e-266 922.2 591 81.2
FAN14G3054 Fragaria x ananassa HOM05D004172 ORTHO05D006010 1.8e-265 919.1 591 81.0
FAN02G3863 Fragaria x ananassa HOM05D004172 ORTHO05D006010 3.1e-265 918.3 591 80.7
VMungo0331G1250 Vigna mungo HOM05D004172 ORTHO05D006010 4.0e-265 917.9 603 81.1
QL07p031284 Quercus lobata HOM05D004172 ORTHO05D006010 4.4e-264 914.4 600 79.7
Cfa017003 Carpinus fangiana HOM05D004172 ORTHO05D006010 2.2e-263 912.1 602 79.1
QL07p031617 Quercus lobata HOM05D004172 ORTHO05D006010 2.9e-263 911.8 600 79.5
CANSAT55G0003 Cannabis sativa HOM05D004172 ORTHO05D006010 3.2e-262 908.3 599 78.0
Eucgr.K01297 Eucalyptus grandis HOM05D004172 ORTHO05D006010 6.0e-261 904.0 591 79.7
Thecc.04G148100 Theobroma cacao HOM05D004172 ORTHO05D006010 7.8e-261 903.7 604 78.5
Duzib151G0210 Durio zibethinus HOM05D004172 ORTHO05D006010 1.3e-260 902.9 594 79.5
TWI53G0780 Tripterygium wilfordii HOM05D004172 ORTHO05D006010 2.3e-260 902.1 591 79.7
Sed0001307 Sechium edule HOM05D004172 ORTHO05D006010 1.1e-259 899.8 591 78.7
Gohir.A02G001800 Gossypium hirsutum HOM05D004172 ORTHO05D006010 1.1e-257 893.3 597 78.6
Cpa.g.sc0.76 Carica papaya HOM05D004172 ORTHO05D006010 1.4e-257 892.9 599 77.1
Gorai.011G125600 Gossypium raimondii HOM05D004172 ORTHO05D006010 1.8e-257 892.5 599 77.8
Gohir.D10G113800 Gossypium hirsutum HOM05D004172 ORTHO05D006010 2.4e-257 892.1 599 77.6
Ciclev10011331m.g Citrus clementina HOM05D004172 ORTHO05D006010 6.9e-257 890.6 591 78.3
Gohir.A10G152400 Gossypium hirsutum HOM05D004172 ORTHO05D006010 6.9e-257 890.6 599 77.3
CsaV3_4G027360 Cucumis sativus L. HOM05D004172 ORTHO05D006010 2.0e-256 889.0 591 78.2
PGR004G2490 Punica granatum HOM05D004172 ORTHO05D006010 2.0e-256 889.0 596 77.2
Atru.chr8.66 Acer truncatum HOM05D004172 ORTHO05D006010 4.4e-256 887.9 592 78.9
Potri.006G111200 Populus trichocarpa HOM05D004172 ORTHO05D006010 4.4e-256 887.9 590 77.8
ClCG04G006210 Citrullus lanatus HOM05D004172 ORTHO05D006010 7.6e-256 887.1 591 77.7
CiPaw.10G166300 Carya illinoinensis HOM05D004172 ORTHO05D006010 1.7e-255 885.9 567 80.2
Gohir.D02G002100 Gossypium hirsutum HOM05D004172 ORTHO05D006010 1.9e-254 882.5 597 77.6
MELO3C025255.2 Cucumis melo HOM05D004172 ORTHO05D006010 2.4e-254 882.1 591 77.7
Gorai.005G002600 Gossypium raimondii HOM05D004172 ORTHO05D006010 3.2e-254 881.7 597 77.6
A03p36430 Brassica napus HOM05D004172 ORTHO05D006010 7.1e-254 880.6 594 75.6
BolC3t16675H Brassica oleracea HOM05D004172 ORTHO05D006010 1.6e-253 879.4 594 75.8
Dinv16944 Davidia involucrata HOM05D004172 ORTHO05D006010 2.1e-253 879.0 595 77.0
Haze_21203 Corylus avellana HOM05D004172 ORTHO05D006010 2.7e-253 878.6 701 68.2
BraA03t12811Z Brassica rapa HOM05D004172 ORTHO05D006010 6.0e-253 877.5 594 75.6
Thhalv10020349m.g Eutrema salsugineum HOM05D004172 ORTHO05D006010 3.9e-252 874.8 592 75.3
AT3G08650 Arabidopsis thaliana HOM05D004172 ORTHO05D006010 1.1e-251 873.2 592 75.5
CARHR082950 Cardamine hirsuta HOM05D004172 ORTHO05D006010 1.1e-251 873.2 593 75.5
Carub.0003s0778 Capsella rubella HOM05D004172 ORTHO05D006010 1.5e-251 872.8 597 74.7
THA.LOC104806653 Tarenaya hassleriana HOM05D004172 ORTHO05D006010 4.8e-250 867.8 591 75.3
Hma1.2p1_0106F.1_g051180 Hydrangea macrophylla HOM05D004172 ORTHO05D006010 1.4e-249 866.3 591 75.6
Sp3g07090 Schrenkiella parvula HOM05D004172 ORTHO05D006010 1.8e-249 865.9 592 74.5
AL3G19650 Arabidopsis lyrata HOM05D004172 ORTHO05D006010 4.0e-249 864.8 597 74.0
BolC5t34577H Brassica oleracea HOM05D004172 ORTHO05D006010 4.0e-249 864.8 593 74.2
BcaC09g47981 Brassica carinata HOM05D004172 ORTHO05D006010 6.9e-249 864.0 594 74.1
BolC1t05497H Brassica oleracea HOM05D004172 ORTHO05D006010 6.9e-249 864.0 594 74.1
Dinv21399 Davidia involucrata HOM05D004172 ORTHO05D006010 6.9e-249 864.0 591 76.3
Sabra04G0157100 Salix brachista HOM05D004172 ORTHO05D006010 1.2e-248 863.2 639 71.8
Rhsim04G0120600 Rhododendron simsii HOM05D004172 ORTHO05D006010 1.5e-248 862.8 591 76.3
A05p40120 Brassica napus HOM05D004172 ORTHO05D006010 3.4e-248 861.7 593 74.2
C05p59200 Brassica napus HOM05D004172 ORTHO05D006010 5.8e-248 860.9 593 74.2
Aa31LG5G18700 Aethionema arabicum HOM05D004172 ORTHO05D006010 1.7e-247 859.4 600 73.5
BNapus_Darmor_BZH_scaffold_167p00070 Brassica napus HOM05D004172 ORTHO05D006010 1.7e-247 859.4 594 74.1
CSS0013897 Camellia sinensis var. sinensis HOM05D004172 ORTHO05D006010 6.4e-247 857.4 599 74.6
BcaB04g21247 Brassica carinata HOM05D004172 ORTHO05D006010 1.9e-246 855.9 593 72.8
BcaC01g04188 Brassica carinata HOM05D004172 ORTHO05D006010 2.7e-245 852.0 594 74.2
THA.LOC104823330 Tarenaya hassleriana HOM05D004172 ORTHO05D006010 2.7e-245 852.0 592 74.7
Sabra06G0086400 Salix brachista HOM05D004172 ORTHO05D006010 7.9e-245 850.5 696 66.2
SalBow6G2214 Salvia bowleyana HOM05D004172 ORTHO05D006010 1.3e-244 849.7 592 74.2
MSTRG.5032 Avicennia marina HOM05D004172 ORTHO05D006010 5.1e-244 847.8 599 73.8
Peaxi162Scf00019g00011 Petunia axillaris HOM05D004172 ORTHO05D006010 8.7e-244 847.0 597 73.9
BcaC05g29600 Brassica carinata HOM05D004172 ORTHO05D006010 2.5e-243 845.5 584 74.1
Nitab4.5_0000707g0290 Nicotiana tabacum HOM05D004172 ORTHO05D006010 4.8e-242 841.3 573 75.6
Aqoxy4G03306 Aquilegia oxysepala HOM05D004172 ORTHO05D006010 8.1e-242 840.5 585 74.2
Nitab4.5_0006228g0020 Nicotiana tabacum HOM05D004172 ORTHO05D006010 1.8e-241 839.3 576 75.5
Solyc01g087530.3 Solanum lycopersicum HOM05D004172 ORTHO05D006010 2.4e-241 839.0 600 73.5
Sc20g0007210 Simmondsia chinensis HOM05D004172 ORTHO05D006010 3.1e-241 838.6 593 73.4
Sopen01g034500 Solanum pennellii HOM05D004172 ORTHO05D006010 6.9e-241 837.4 600 73.3
GSVIVG01029868001 Vitis vinifera HOM05D004172 ORTHO05D006010 1.5e-240 836.3 508 82.5
PGSC0003DMG400006857 Solanum tuberosum HOM05D004172 ORTHO05D006010 2.6e-240 835.5 597 73.5
Lj7P587T8 Lonicera japonica HOM05D004172 ORTHO05D006010 4.5e-240 834.7 594 73.9
Nn5g26794 Nelumbo nucifera HOM05D004172 ORTHO05D006010 3.2e-238 828.6 565 75.4
MBI15_g31039_MAGBIO Magnolia biondii HOM05D004172 ORTHO05D006010 4.2e-238 828.2 589 73.3
TAR633G1329 Trochodendron aralioides HOM05D004172 ORTHO05D006010 5.5e-238 827.8 582 74.2
CAN.G219.48 Capsicum annuum HOM05D004172 ORTHO05D006010 9.3e-238 827.0 601 72.7
Oeu006559.1 Olea europaea HOM05D004172 ORTHO05D006010 1.2e-237 826.6 614 71.5
Migut.N01780 Erythranthe guttata HOM05D004172 ORTHO05D006010 3.3e-235 818.5 599 72.3
Actinidia20804 Actinidia chinensis HOM05D004172 ORTHO05D006010 1.6e-234 816.2 591 73.9
Hund03687 Selenicereus undatus HOM05D004172 ORTHO05D006010 1.6e-234 816.2 594 72.1
PSO017G1041 Papaver somniferum HOM05D004172 ORTHO05D006010 2.1e-234 815.8 596 73.2
PSO170G1455 Papaver somniferum HOM05D004172 ORTHO05D006010 2.4e-233 812.4 596 72.8
DCAR_029461 Daucus carota HOM05D004172 ORTHO05D006010 3.1e-233 812.0 595 72.9
AUR62029801 Chenopodium quinoa HOM05D004172 ORTHO05D006010 4.0e-233 811.6 593 70.7
AUR62006448 Chenopodium quinoa HOM05D004172 ORTHO05D006010 3.4e-232 808.5 593 71.0
Cc02_g28240 Coffea canephora HOM05D004172 ORTHO05D006010 5.8e-232 807.7 511 80.0
EL10Ac7g17137 Beta vulgaris HOM05D004172 ORTHO05D006010 6.5e-231 804.3 596 70.0
PSO502G0022 Papaver somniferum HOM05D004172 ORTHO05D006010 6.5e-231 804.3 596 72.3
Ah.15g089820 Amaranthus hybridus HOM05D004172 ORTHO05D006010 8.4e-231 803.9 592 69.8
ECA248G2273 Erigeron canadensis HOM05D004172 ORTHO05D006010 8.4e-231 803.9 602 71.4
TAR636G0443 Trochodendron aralioides HOM05D004172 ORTHO05D006010 2.4e-225 785.8 600 69.8
Oeu049006.1 Olea europaea HOM05D004172 ORTHO05D006010 1.0e-223 780.4 592 69.9
ATR1127G216 Amborella trichopoda HOM05D004172 ORTHO05D006010 1.2e-216 756.9 565 70.1
Os05g0316100 Oryza sativa ssp. japonica HOM05D004172 ORTHO05D006010 2.0e-216 756.1 594 66.8
CDE09G1233 Ceratophyllum demersum HOM05D004172 ORTHO05D006010 7.7e-216 754.2 582 68.6
SHI12946 Sapria himalayana HOM05D004172 ORTHO05D006010 7.9e-213 744.2 601 66.7
Lsat_1_v5_gn_1_105840 Lactuca sativa HOM05D004172 ORTHO05D006010 2.5e-206 722.6 601 66.7
HPP92_026424 Vanilla planifolia HOM05D004172 ORTHO05D006010 5.5e-206 721.5 593 65.4
Potri.016G140500 Populus trichocarpa HOM05D004172 ORTHO05D006010 4.7e-205 718.4 603 64.7
Zm00001eb408330 Zea mays HOM05D004172 ORTHO05D006010 2.6e-200 702.6 589 64.5
unitig_747.g21293 Utricularia gibba HOM05D004172 ORTHO05D006010 2.6e-187 659.4 514 70.0
CDE08G0114 Ceratophyllum demersum HOM05D004172 ORTHO05D006010 1.0e-180 637.5 448 74.1
HanXRQChr01g0016071 Helianthus annuus HOM05D004172 ORTHO05D006010 5.2e-180 635.2 433 77.6
SEGI_23896 Sequoiadendron giganteum HOM05D004172 ORTHO05D006010 5.6e-174 615.1 478 66.7
vmacro08954 Vaccinium macrocarpon HOM05D004172 ORTHO05D006010 1.2e-173 614.0 507 66.9
C03p44040 Brassica napus HOM05D004172 ORTHO05D006010 4.0e-164 582.4 392 79.1
SMO337G0001 Selaginella moellendorffii HOM05D004172 ORTHO05D006010 2.1e-160 570.1 526 59.5
BraA01t04334Z Brassica rapa HOM05D004172 ORTHO05D006010 8.1e-157 558.1 372 74.7
CiPaw.09G223100 Carya illinoinensis HOM05D004172 ORTHO05D006010 8.6e-151 538.1 592 55.9
Pp3c6_18720 Physcomitrium patens HOM05D004172 ORTHO05D006010 1.3e-141 507.7 519 52.4
Actinidia32576 Actinidia chinensis HOM05D004172 ORTHO05D006010 2.1e-133 480.3 400 66.0
SGA_v2.0_scaffold5G02963 Striga asiatica HOM05D004172 ORTHO05D006010 2.7e-128 463.4 332 74.7
CSS0016172 Camellia sinensis var. sinensis HOM05D004172 ORTHO05D006010 4.3e-118 429.5 309 73.1
COL.COLO4_05675 Corchorus olitorius HOM05D004172 ORTHO05D006010 1.1e-116 424.9 252 86.9
Mapoly0092s0078 Marchantia polymorpha HOM05D004172 ORTHO05D006010 4.8e-109 399.4 514 46.5
CBR_g164 Chara braunii HOM05D004172 ORTHO05D006010 1.2e-96 358.2 559 41.3
BcaB04g18578 Brassica carinata HOM05D004172 ORTHO05D006010 6.7e-95 352.4 220 80.5
Actinidia28546 Actinidia chinensis HOM05D004172 ORTHO05D006010 1.0e-90 338.6 229 76.0
SEGI_22351 Sequoiadendron giganteum HOM05D004172 ORTHO05D006010 1.2e-78 298.5 177 84.2
C03p44050 Brassica napus HOM05D004172 ORTHO05D006010 7.5e-78 295.8 210 68.1
MCO09G526 Micromonas commoda HOM05D004172 ORTHO05D006010 3.8e-66 256.9 257 53.3
Cre06.g281900 Chlamydomonas reinhardtii HOM05D004172 ORTHO05D006010 2.2e-61 241.1 242 49.2
Medtr3g094870 Medicago truncatula HOM05D004172 ORTHO05D006010 1.9e-52 211.5 109 96.3
PRCOL_00003523 Prasinoderma coloniale HOM05D004172 ORTHO05D006010 2.1e-48 198.0 266 44.7
CSS0001306 Camellia sinensis var. sinensis HOM05D004172 ORTHO05D000002 2.9e-37 161.0 133 62.4
HanXRQChr04g0127351 Helianthus annuus HOM05D004172 ORTHO05D006010 2.4e-31 141.4 137 58.4
QL07p004777 Quercus lobata HOM05D004172 ORTHO05D039478 2.4e-23 114.8 187 40.1
RcHm_v2.0_Chr3g0459981 Rosa chinensis HOM05D004172 ORTHO05D018193 1.7e-21 108.6 106 57.5
SEGI_04146 Sequoiadendron giganteum HOM05D004172 ORTHO05D006010 4.9e-21 107.1 250 36.0
RcHm_v2.0_Chr3g0460031 Rosa chinensis HOM05D004172 ORTHO05D018193 7.9e-19 99.8 104 54.8
Actinidia32575 Actinidia chinensis HOM05D004172 ORTHO05D006010 5.1e-18 97.1 50 86.0
BcaC02g10326 Brassica carinata HOM05D004172 ORTHO05D023965 8.7e-18 96.3 83 59.0
C02p50100 Brassica napus HOM05D004172 ORTHO05D018193 1.5e-17 95.5 52 90.4
BolC2t11086H Brassica oleracea HOM05D004172 ORTHO05D018193 1.5e-17 95.5 52 90.4
HanXRQChr11g0335241 Helianthus annuus HOM05D004172 ORTHO05D006010 2.0e-14 85.1 52 82.7
BolC4t24562H Brassica oleracea HOM05D004172 ORTHO05D023965 4.2e-12 77.4 74 54.1
C04p30290 Brassica napus HOM05D004172 ORTHO05D023965 5.5e-12 77.0 74 54.1
SEGI_20309 Sequoiadendron giganteum HOM05D004172 ORTHO05D006010 5.5e-12 77.0 60 65.0
C01p21620 Brassica napus HOM05D004172 ORTHO05D023965 2.7e-11 74.7 74 54.1
BcaC09g50722 Brassica carinata HOM05D004172 ORTHO05D023965 1.3e-08 65.9 59 55.9
C03p65240 Brassica napus HOM05D004172 ORTHO05D018193 2.1e-08 65.1 30 93.3
BolC3t18777H Brassica oleracea HOM05D004172 ORTHO05D018193 2.1e-08 65.1 30 93.3
TAR633G1452 Trochodendron aralioides HOM05D004172 ORTHO05D414170 3.7e-08 64.3 57 52.6
BcaC05g28200 Brassica carinata HOM05D004381 ORTHO05D005200 1.5e-06 58.9 246 26.8
COL.COLO4_16027 Corchorus olitorius HOM05D004172 ORTHO05D159660 3.4e-06 57.8 51 66.7
BcaC07g38378 Brassica carinata HOM05D004172 ORTHO05D039478 5.8e-06 57.0 51 41.2


User provided reference genes

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