Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_07739_v3 Cicer arietinum L. HOM05D004804 ORTHO05D005882 6.2e-213 743.8 364 100.0
TPR.G21455 Trifolium pratense HOM05D004804 ORTHO05D005882 4.1e-188 661.4 366 90.7
Medtr7g100345 Medicago truncatula HOM05D004804 ORTHO05D005882 1.5e-187 659.4 364 89.0
Ca_08795_v3 Cicer arietinum L. HOM05D004804 ORTHO05D005882 5.3e-180 634.4 364 86.8
Glyma.03G173400 Glycine max HOM05D004804 ORTHO05D005882 1.0e-178 630.2 365 86.8
Lj1g0023900 Lotus japonicus HOM05D004804 ORTHO05D005882 1.3e-178 629.8 364 85.7
Glyma.19G174300 Glycine max HOM05D004804 ORTHO05D005882 5.0e-178 627.9 365 86.0
Phvul.001G170900 Phaseolus vulgaris HOM05D004804 ORTHO05D005882 2.7e-176 622.1 365 85.2
VMungo1383G1812 Vigna mungo HOM05D004804 ORTHO05D005882 2.7e-176 622.1 365 84.9
Lalb_Chr25g0289471 Lupinus albus HOM05D004804 ORTHO05D005882 4.8e-173 611.3 364 82.1
arahy.Tifrunner.gnm1.ann1.EYL599 Arachis hypogaea HOM05D004804 ORTHO05D005882 1.0e-170 603.6 364 81.0
Lalb_Chr20g0113121 Lupinus albus HOM05D004804 ORTHO05D005882 7.5e-166 587.4 364 79.7
Psat3g121680 Pisum sativum HOM05D004804 ORTHO05D005882 1.5e-161 573.2 325 88.3
QL07p046693 Quercus lobata HOM05D004804 ORTHO05D005882 1.3e-157 560.1 372 72.6
RcHm_v2.0_Chr3g0467571 Rosa chinensis HOM05D004804 ORTHO05D005882 2.3e-154 549.3 371 72.2
CiPaw.09G187800 Carya illinoinensis HOM05D004804 ORTHO05D005882 1.9e-153 546.2 369 71.5
FvH4_6g14490 Fragaria vesca HOM05D004804 ORTHO05D005882 6.1e-152 541.2 364 70.9
PGR004G0439 Punica granatum HOM05D004804 ORTHO05D005882 2.3e-151 539.3 368 71.5
Atru.chr8.1921 Acer truncatum HOM05D004804 ORTHO05D005882 4.4e-150 535.0 374 70.3
Dinv37213 Davidia involucrata HOM05D004804 ORTHO05D005882 4.4e-150 535.0 366 71.9
Haze_20724 Corylus avellana HOM05D004804 ORTHO05D005882 7.5e-150 534.3 381 69.3
FAN02G1589 Fragaria x ananassa HOM05D004804 ORTHO05D005882 1.3e-149 533.5 364 70.9
MD04G1119400 Malus domestica HOM05D004804 ORTHO05D005882 1.3e-149 533.5 368 71.7
Sed0001519 Sechium edule HOM05D004804 ORTHO05D005882 2.2e-149 532.7 375 70.1
Manes.08G076545 Manihot esculenta HOM05D004804 ORTHO05D005882 2.8e-149 532.3 376 69.9
CsaV3_4G024670 Cucumis sativus L. HOM05D004804 ORTHO05D005882 8.3e-149 530.8 365 69.3
Cfa017439 Carpinus fangiana HOM05D004804 ORTHO05D005882 1.1e-148 530.4 381 68.8
Peaxi162Scf00039g00093 Petunia axillaris HOM05D004804 ORTHO05D005882 1.1e-148 530.4 365 69.3
Gohir.D04G118600 Gossypium hirsutum HOM05D004804 ORTHO05D005882 1.4e-148 530.0 368 69.8
Duzib093G1125 Durio zibethinus HOM05D004804 ORTHO05D005882 1.8e-148 529.6 372 69.6
CANSAT80G2153 Cannabis sativa HOM05D004804 ORTHO05D005882 3.1e-148 528.9 368 69.0
Thecc.05G045900 Theobroma cacao HOM05D004804 ORTHO05D005882 3.1e-148 528.9 373 69.2
GSVIVG01025612001 Vitis vinifera HOM05D004804 ORTHO05D005882 4.1e-148 528.5 299 80.3
Eucgr.K03171 Eucalyptus grandis HOM05D004804 ORTHO05D005882 7.0e-148 527.7 346 71.7
Gorai.009G423800 Gossypium raimondii HOM05D004804 ORTHO05D005882 7.0e-148 527.7 369 69.9
MD12G1136700 Malus domestica HOM05D004804 ORTHO05D005882 2.0e-147 526.2 374 69.8
FAN09G0808 Fragaria x ananassa HOM05D004804 ORTHO05D005882 2.7e-147 525.8 367 70.8
COL.COLO4_14869 Corchorus olitorius HOM05D004804 ORTHO05D005882 5.9e-147 524.6 373 68.6
Sc01g0003910 Simmondsia chinensis HOM05D004804 ORTHO05D005882 1.3e-146 523.5 364 70.1
SalBow4G1685 Salvia bowleyana HOM05D004804 ORTHO05D005882 1.7e-146 523.1 368 68.8
SGA_v2.0_scaffold126G33837 Striga asiatica HOM05D004804 ORTHO05D005882 2.9e-146 522.3 376 68.1
EL10Ac2g02842 Beta vulgaris HOM05D004804 ORTHO05D005882 3.8e-146 521.9 376 67.8
Gohir.A04G079400 Gossypium hirsutum HOM05D004804 ORTHO05D005882 3.8e-146 521.9 366 69.7
TWI53G1005 Tripterygium wilfordii HOM05D004804 ORTHO05D005882 6.6e-146 521.2 376 69.1
Cc06_g03070 Coffea canephora HOM05D004804 ORTHO05D005882 1.1e-145 520.4 327 74.0
Solyc09g005700.3 Solanum lycopersicum HOM05D004804 ORTHO05D005882 1.5e-145 520.0 373 68.4
SalBow1G1981 Salvia bowleyana HOM05D004804 ORTHO05D005882 3.3e-145 518.8 371 69.3
Hma1.2p1_1481F.1_g286070 Hydrangea macrophylla HOM05D004804 ORTHO05D005882 5.6e-145 518.1 313 75.7
Actinidia05292 Actinidia chinensis HOM05D004804 ORTHO05D005882 7.3e-145 517.7 371 68.2
Ah.10g030750 Amaranthus hybridus HOM05D004804 ORTHO05D005882 7.3e-145 517.7 320 75.0
Lj2A100T74 Lonicera japonica HOM05D004804 ORTHO05D005882 7.3e-145 517.7 312 76.3
Potri.006G102700 Populus trichocarpa HOM05D004804 ORTHO05D005882 7.3e-145 517.7 365 69.6
ClCG04G008480 Citrullus lanatus HOM05D004804 ORTHO05D005882 9.5e-145 517.3 380 66.3
Ciclev10012025m.g Citrus clementina HOM05D004804 ORTHO05D005882 9.5e-145 517.3 367 68.9
Aqoxy4G03017 Aquilegia oxysepala HOM05D004804 ORTHO05D005882 1.2e-144 516.9 374 66.8
Hund13338 Selenicereus undatus HOM05D004804 ORTHO05D005882 1.2e-144 516.9 320 75.0
Potri.016G120900 Populus trichocarpa HOM05D004804 ORTHO05D005882 4.7e-144 515.0 365 68.8
Rhsim05G0187300 Rhododendron simsii HOM05D004804 ORTHO05D005882 1.0e-143 513.8 388 64.9
A05p08530 Brassica napus HOM05D004804 ORTHO05D005882 1.4e-143 513.5 364 68.1
BraA05t19821Z Brassica rapa HOM05D004804 ORTHO05D005882 1.8e-143 513.1 364 68.1
C04p10610 Brassica napus HOM05D004804 ORTHO05D005882 2.3e-143 512.7 365 68.8
BolC4t22652H Brassica oleracea HOM05D004804 ORTHO05D005882 2.3e-143 512.7 365 68.8
CAN.G125.11 Capsicum annuum HOM05D004804 ORTHO05D005882 2.3e-143 512.7 310 74.2
Thhalv10016845m.g Eutrema salsugineum HOM05D004804 ORTHO05D005882 5.2e-143 511.5 366 68.3
CARHR163490 Cardamine hirsuta HOM05D004804 ORTHO05D005882 6.8e-143 511.1 367 68.4
Nn2g12889 Nelumbo nucifera HOM05D004804 ORTHO05D005882 8.9e-143 510.8 364 67.6
Nitab4.5_0002995g0070 Nicotiana tabacum HOM05D004804 ORTHO05D005882 8.9e-143 510.8 361 69.0
THA.LOC104806587 Tarenaya hassleriana HOM05D004804 ORTHO05D005882 1.2e-142 510.4 366 68.0
TAR623G1260 Trochodendron aralioides HOM05D004804 ORTHO05D005882 1.2e-142 510.4 364 67.6
Carub.0005s2015 Capsella rubella HOM05D004804 ORTHO05D005882 2.6e-142 509.2 367 68.4
AT3G53580 Arabidopsis thaliana HOM05D004804 ORTHO05D005882 9.8e-142 507.3 369 68.8
MSTRG.5692 Avicennia marina HOM05D004804 ORTHO05D005882 1.7e-141 506.5 375 65.6
FAN14G5408 Fragaria x ananassa HOM05D004804 ORTHO05D005882 2.2e-141 506.1 363 67.5
Sp4g19750 Schrenkiella parvula HOM05D004804 ORTHO05D005882 4.9e-141 505.0 371 67.9
Oeu029811.2 Olea europaea HOM05D004804 ORTHO05D005882 6.4e-141 504.6 358 70.4
Thhalv10010477m.g Eutrema salsugineum HOM05D004804 ORTHO05D005882 8.3e-141 504.2 368 67.9
Migut.L01624 Erythranthe guttata HOM05D004804 ORTHO05D005882 1.1e-140 503.8 372 67.5
Lsat_1_v5_gn_2_111181 Lactuca sativa HOM05D004804 ORTHO05D005882 1.9e-140 503.1 371 64.2
DCAR_009258 Daucus carota HOM05D004804 ORTHO05D005882 3.2e-140 502.3 369 68.0
AL5G34510 Arabidopsis lyrata HOM05D004804 ORTHO05D005882 5.4e-140 501.5 371 67.7
ECA238G1409 Erigeron canadensis HOM05D004804 ORTHO05D005882 5.4e-140 501.5 374 65.0
PSO339G6548 Papaver somniferum HOM05D004804 ORTHO05D005882 5.4e-140 501.5 338 69.8
AUR62026834 Chenopodium quinoa HOM05D004804 ORTHO05D005882 1.2e-139 500.4 373 65.1
Aa31LG5G22830 Aethionema arabicum HOM05D004804 ORTHO05D005882 2.7e-139 499.2 315 74.0
PSO384G4865 Papaver somniferum HOM05D004804 ORTHO05D005882 6.0e-139 498.0 369 66.1
Migut.J00372 Erythranthe guttata HOM05D004804 ORTHO05D005882 2.3e-138 496.1 371 64.2
BolC6t37342H Brassica oleracea HOM05D004804 ORTHO05D005882 3.9e-138 495.4 370 66.8
HanXRQChr14g0453791 Helianthus annuus HOM05D004804 ORTHO05D005882 6.6e-138 494.6 381 63.5
Sp5g08760 Schrenkiella parvula HOM05D004804 ORTHO05D005882 1.1e-137 493.8 362 66.9
BcaB01g00261 Brassica carinata HOM05D004804 ORTHO05D005882 1.9e-137 493.0 366 66.9
BcaC08g44637 Brassica carinata HOM05D004804 ORTHO05D005882 1.9e-137 493.0 370 66.5
C06p21540 Brassica napus HOM05D004804 ORTHO05D005882 1.9e-137 493.0 370 66.5
A07p21740 Brassica napus HOM05D004804 ORTHO05D005882 2.5e-137 492.7 315 73.3
BraA09t40124Z Brassica rapa HOM05D004804 ORTHO05D005882 4.3e-137 491.9 368 67.4
BcaB02g07773 Brassica carinata HOM05D004804 ORTHO05D005882 7.3e-137 491.1 372 66.4
A09p46600 Brassica napus HOM05D004804 ORTHO05D005882 1.2e-136 490.3 366 67.2
CDE08G0350 Ceratophyllum demersum HOM05D004804 ORTHO05D005882 4.7e-136 488.4 352 67.6
BraA07t29856Z Brassica rapa HOM05D004804 ORTHO05D005882 6.2e-136 488.0 316 73.1
Actinidia19758 Actinidia chinensis HOM05D004804 ORTHO05D001149 1.2e-134 483.8 363 68.3
C08p28920 Brassica napus HOM05D004804 ORTHO05D005882 7.5e-134 481.1 369 65.6
Nitab4.5_0005039g0030 Nicotiana tabacum HOM05D004804 ORTHO05D005882 8.3e-133 477.6 388 61.9
unitig_27.g24899 Utricularia gibba HOM05D002116 ORTHO05D005882 1.9e-132 476.5 308 71.1
HPP92_019459 Vanilla planifolia HOM05D004804 ORTHO05D005882 3.2e-132 475.7 344 66.3
Nitab4.5_0004851g0050 Nicotiana tabacum HOM05D004804 ORTHO05D005882 7.0e-132 474.6 484 52.3
Zm00001eb136710 Zea mays HOM05D004804 ORTHO05D005882 2.7e-131 472.6 312 69.9
CSS0039312 Camellia sinensis var. sinensis HOM05D004804 ORTHO05D001149 7.8e-131 471.1 333 70.6
ATR0033G037 Amborella trichopoda HOM05D004804 ORTHO05D005882 6.6e-130 468.0 290 72.4
vmacro20115 Vaccinium macrocarpon HOM05D004804 ORTHO05D005882 9.5e-129 464.2 315 70.5
MELO3C003100.2 Cucumis melo HOM05D004804 ORTHO05D005882 1.2e-128 463.8 392 61.0
Sabra06G0079000 Salix brachista HOM05D004804 ORTHO05D005882 9.5e-121 437.6 277 74.4
AUR62037218 Chenopodium quinoa HOM05D004804 ORTHO05D005882 3.1e-119 432.6 340 63.5
BcaNung07017 Brassica carinata HOM05D004804 ORTHO05D005882 3.4e-118 429.1 337 65.3
AagrBONN_evm.TU.Sc2ySwM_228.1472 Anthoceros agrestis HOM05D004804 ORTHO05D005882 4.6e-115 418.7 281 68.3
SMO118G0282 Selaginella moellendorffii HOM05D004804 ORTHO05D005882 1.5e-113 413.7 282 68.4
Mapoly0001s0200 Marchantia polymorpha HOM05D004804 ORTHO05D005882 3.1e-111 406.0 286 68.2
BcaNung07160 Brassica carinata HOM05D004804 ORTHO05D005882 6.4e-109 398.3 314 64.3
BcaC07g39720 Brassica carinata HOM05D004804 ORTHO05D005882 3.0e-106 389.4 286 68.9
AUR62038459 Chenopodium quinoa HOM05D004804 ORTHO05D005882 2.1e-104 383.3 244 70.1
Pp3c10_3520 Physcomitrium patens HOM05D004804 ORTHO05D005882 1.1e-103 380.9 285 62.1
Sopen09g001590 Solanum pennellii HOM05D004804 ORTHO05D005882 5.3e-103 378.6 289 64.7
Cre05.g237400 Chlamydomonas reinhardtii HOM05D004804 ORTHO05D005882 1.3e-101 374.0 287 62.0
MCO16G320 Micromonas commoda HOM05D004804 ORTHO05D005882 8.1e-96 354.8 285 59.3
SMO116G0240 Selaginella moellendorffii HOM05D004804 ORTHO05D005882 3.5e-91 339.3 294 55.4
Zm00001eb028810 Zea mays HOM05D004804 ORTHO05D005882 4.6e-91 339.0 297 56.2
Prupe.6G249100 Prunus persica HOM05D004804 ORTHO05D005882 6.0e-91 338.6 257 66.1
Cpa.g.c31068.3 Carica papaya HOM05D004804 ORTHO05D005882 2.8e-88 329.7 259 63.3
BolC8t50494H Brassica oleracea HOM05D004804 ORTHO05D005882 2.1e-83 313.5 341 54.5
PRCOL_00004448 Prasinoderma coloniale HOM05D004804 ORTHO05D005882 3.0e-82 309.7 282 55.3
Medtr7g072350 Medicago truncatula HOM05D004804 ORTHO05D005882 2.4e-79 300.1 229 68.1
Cpa.g.c30481.1 Carica papaya HOM05D004804 ORTHO05D005882 5.0e-77 292.4 168 81.0
MD07G1084600 Malus domestica HOM05D004804 ORTHO05D005882 5.5e-68 262.3 150 78.0
MD07G1085800 Malus domestica HOM05D004804 ORTHO05D005882 1.1e-57 228.0 127 81.1
FvH4_5g27660 Fragaria vesca HOM05D004804 ORTHO05D005882 8.5e-53 211.8 127 71.7
BcaC05g25676 Brassica carinata HOM05D004804 ORTHO05D005882 5.4e-47 192.6 146 61.0
AUR62014235 Chenopodium quinoa HOM05D004804 ORTHO05D005882 7.0e-47 192.2 334 38.6
BcaC03g18267 Brassica carinata HOM05D004804 ORTHO05D005882 8.8e-42 175.3 146 56.8
FAN18G1921 Fragaria x ananassa HOM05D004804 ORTHO05D005882 1.5e-41 174.5 100 73.0
BcaC03g18268 Brassica carinata HOM05D004804 ORTHO05D005882 1.1e-39 168.3 146 56.2
SEGI_18757 Sequoiadendron giganteum HOM05D004804 ORTHO05D005882 1.1e-36 158.3 112 62.5
SEGI_29945 Sequoiadendron giganteum HOM05D004804 ORTHO05D005882 8.9e-34 148.7 108 64.8
BcaC01g02299 Brassica carinata HOM05D004804 ORTHO05D005882 5.7e-33 146.0 216 40.3
Hma1.2p1_0683F.1_g202920 Hydrangea macrophylla HOM05D004804 ORTHO05D005882 2.8e-27 127.1 72 79.2
Atru.chr5.1411 Acer truncatum HOM05D004804 ORTHO05D005882 2.3e-18 97.4 102 52.0
SEGI_13543 Sequoiadendron giganteum HOM05D004804 ORTHO05D005882 3.1e-18 97.1 60 73.3
C03p66890 Brassica napus HOM05D004804 ORTHO05D005882 7.1e-15 85.9 67 53.7
BolC3t18959H Brassica oleracea HOM05D004804 ORTHO05D005882 7.1e-15 85.9 67 53.7
MSTRG.19109 Avicennia marina HOM05D004804 ORTHO05D005882 2.1e-14 84.3 61 60.7
BolC5t30247H Brassica oleracea HOM05D003490 ORTHO05D039708 1.0e-13 82.0 116 43.1
C03p66880 Brassica napus HOM05D004804 ORTHO05D005882 2.3e-13 80.9 44 77.3
BolC3t18958H Brassica oleracea HOM05D004804 ORTHO05D005882 3.9e-13 80.1 43 79.1
SGA_v2.0_scaffold594G53100 Striga asiatica HOM05D004804 ORTHO05D005882 3.3e-12 77.0 70 55.7
Rhsim01G0214400 Rhododendron simsii HOM05D004804 ORTHO05D000007 1.2e-11 75.1 35 85.7
FAN13G1509 Fragaria x ananassa HOM05D004804 ORTHO05D022561 2.1e-11 74.3 41 75.6
RcHm_v2.0_Chr6g0244381 Rosa chinensis HOM05D004556 ORTHO05D005298 2.6e-09 67.4 37 86.5


User provided reference genes

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