Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_07684_v3 Cicer arietinum L. HOM05D004624 ORTHO05D005357 2.4e-27 124.8 64 100.0
Glyma.01G100100 Glycine max HOM05D004624 ORTHO05D005357 5.6e-24 113.6 60 93.3
Glyma.03G068900 Glycine max HOM05D004624 ORTHO05D005357 5.6e-24 113.6 60 93.3
Lj1g0004051 Lotus japonicus HOM05D004624 ORTHO05D005357 7.3e-24 113.2 60 93.3
Psat0s1206g0080 Pisum sativum HOM05D004624 ORTHO05D005357 7.3e-24 113.2 63 92.1
Medtr2g008230 Medicago truncatula HOM05D004624 ORTHO05D005357 1.2e-23 112.5 61 91.8
Medtr4g124060 Medicago truncatula HOM05D004624 ORTHO05D005357 1.2e-23 112.5 61 91.8
Gorai.008G288400 Gossypium raimondii HOM05D004624 ORTHO05D005357 2.1e-23 111.7 62 87.1
Gohir.D07G118600 Gossypium hirsutum HOM05D004624 ORTHO05D005357 2.8e-23 111.3 62 85.5
Gorai.001G127500 Gossypium raimondii HOM05D004624 ORTHO05D005357 2.8e-23 111.3 62 85.5
Duzib205G0906 Durio zibethinus HOM05D004624 ORTHO05D005357 3.6e-23 110.9 62 87.1
Lj4g0019310 Lotus japonicus HOM05D004624 ORTHO05D005357 3.6e-23 110.9 60 91.7
Phvul.001G120800 Phaseolus vulgaris HOM05D004624 ORTHO05D005357 4.7e-23 110.5 60 90.0
Gohir.A07G114500 Gossypium hirsutum HOM05D004624 ORTHO05D005357 6.1e-23 110.2 62 85.5
Gohir.D12G268300 Gossypium hirsutum HOM05D004624 ORTHO05D005357 6.1e-23 110.2 62 85.5
Lalb_Chr19g0128161 Lupinus albus HOM05D004624 ORTHO05D005357 6.1e-23 110.2 59 91.5
TPR.G12609 Trifolium pratense HOM05D004624 ORTHO05D005357 6.1e-23 110.2 61 88.5
Ciclev10010500m.g Citrus clementina HOM05D004624 ORTHO05D005357 8.0e-23 109.8 62 88.7
Hma1.2p1_0223F.1_g094210 Hydrangea macrophylla HOM05D004624 ORTHO05D005357 1.4e-22 109.0 62 83.9
COL.COLO4_05868 Corchorus olitorius HOM05D004624 ORTHO05D005357 1.8e-22 108.6 62 85.5
vmacro08998 Vaccinium macrocarpon HOM05D004624 ORTHO05D005357 2.3e-22 108.2 60 86.7
vmacro17426 Vaccinium macrocarpon HOM05D004624 ORTHO05D005357 4.0e-22 107.5 62 83.9
Atru.chr12.1276 Acer truncatum HOM05D004624 ORTHO05D005357 5.2e-22 107.1 62 85.5
PGR142G2854 Punica granatum HOM05D004624 ORTHO05D005357 5.2e-22 107.1 58 89.7
TPR.G16719 Trifolium pratense HOM05D004624 ORTHO05D005357 5.2e-22 107.1 61 85.2
Rhsim13G0121200 Rhododendron simsii HOM05D004624 ORTHO05D005357 6.8e-22 106.7 62 82.3
arahy.Tifrunner.gnm1.ann1.QE2DSJ Arachis hypogaea HOM05D004624 ORTHO05D005357 8.9e-22 106.3 60 86.7
ClCG11G007400 Citrullus lanatus HOM05D004624 ORTHO05D005357 8.9e-22 106.3 63 81.0
Thecc.03G049000 Theobroma cacao HOM05D004624 ORTHO05D005357 8.9e-22 106.3 62 83.9
CSS0035187 Camellia sinensis var. sinensis HOM05D004624 ORTHO05D005357 1.2e-21 105.9 62 85.5
Cpa.g.sc116.84 Carica papaya HOM05D004624 ORTHO05D005357 1.2e-21 105.9 62 83.9
CSS0023921 Camellia sinensis var. sinensis HOM05D004624 ORTHO05D005357 1.5e-21 105.5 62 82.3
CSS0026932 Camellia sinensis var. sinensis HOM05D004624 ORTHO05D005357 1.5e-21 105.5 62 82.3
MELO3C008583.2 Cucumis melo HOM05D004624 ORTHO05D005357 1.5e-21 105.5 63 79.4
Potri.006G035900 Populus trichocarpa HOM05D004624 ORTHO05D005357 1.5e-21 105.5 62 82.3
Sed0025002 Sechium edule HOM05D004624 ORTHO05D005357 1.5e-21 105.5 62 80.6
PGSC0003DMG400026480 Solanum tuberosum HOM05D004624 ORTHO05D005357 1.5e-21 105.5 62 80.6
arahy.Tifrunner.gnm1.ann1.Q8D3CZ Arachis hypogaea HOM05D004624 ORTHO05D005357 2.0e-21 105.1 60 85.0
AUR62018375 Chenopodium quinoa HOM05D004624 ORTHO05D005357 2.0e-21 105.1 62 83.9
Sabra06G0024000 Salix brachista HOM05D004624 ORTHO05D005357 2.0e-21 105.1 58 86.2
QL07p012089 Quercus lobata HOM05D004624 ORTHO05D005357 2.6e-21 104.8 58 87.9
CsaV3_2G010390 Cucumis sativus L. HOM05D004624 ORTHO05D005357 3.4e-21 104.4 62 80.6
Dinv15634 Davidia involucrata HOM05D004624 ORTHO05D005357 3.4e-21 104.4 62 82.3
Nn7g37680 Nelumbo nucifera HOM05D004624 ORTHO05D005357 3.4e-21 104.4 58 87.9
AUR62030290 Chenopodium quinoa HOM05D004624 ORTHO05D005357 4.4e-21 104.0 62 82.3
Lalb_Chr19g0128151 Lupinus albus HOM05D004624 ORTHO05D005357 4.4e-21 104.0 59 86.4
Aqoxy3G00212 Aquilegia oxysepala HOM05D004624 ORTHO05D005357 5.7e-21 103.6 60 85.0
Cfa019982 Carpinus fangiana HOM05D004624 ORTHO05D005357 7.5e-21 103.2 59 83.1
Haze_02997 Corylus avellana HOM05D004624 ORTHO05D005357 7.5e-21 103.2 58 84.5
Haze_20251 Corylus avellana HOM05D004624 ORTHO05D005357 7.5e-21 103.2 59 83.1
Nitab4.5_0000021g0900 Nicotiana tabacum HOM05D004624 ORTHO05D005357 7.5e-21 103.2 62 79.0
CiPaw.10G042300 Carya illinoinensis HOM05D004624 ORTHO05D005357 1.3e-20 102.4 58 82.8
Cc03_g11260 Coffea canephora HOM05D004624 ORTHO05D005357 1.3e-20 102.4 62 82.3
TWI74G0338 Tripterygium wilfordii HOM05D004624 ORTHO05D005357 1.3e-20 102.4 60 83.3
GSVIVG01025772001 Vitis vinifera HOM05D004624 ORTHO05D005357 1.3e-20 102.4 58 84.5
Cfa010947 Carpinus fangiana HOM05D004624 ORTHO05D005357 1.7e-20 102.1 67 77.6
Migut.J01633 Erythranthe guttata HOM05D004624 ORTHO05D005357 1.7e-20 102.1 62 77.4
Eucgr.K01650 Eucalyptus grandis HOM05D004624 ORTHO05D005357 1.7e-20 102.1 58 86.2
Peaxi162Scf00516g00035 Petunia axillaris HOM05D004624 ORTHO05D005357 1.7e-20 102.1 62 77.4
Potri.016G034200 Populus trichocarpa HOM05D004624 ORTHO05D005357 1.7e-20 102.1 58 82.8
Sabra16G0036900 Salix brachista HOM05D004624 ORTHO05D005357 1.7e-20 102.1 62 79.0
TWI53G0657 Tripterygium wilfordii HOM05D004624 ORTHO05D005357 1.7e-20 102.1 60 83.3
DCAR_020589 Daucus carota HOM05D004624 ORTHO05D005357 2.2e-20 101.7 62 82.3
Sopen03g028160 Solanum pennellii HOM05D004624 ORTHO05D005357 2.2e-20 101.7 62 79.0
Sopen06g029060 Solanum pennellii HOM05D004624 ORTHO05D005357 2.9e-20 101.3 62 82.3
Ah.13g077180 Amaranthus hybridus HOM05D004624 ORTHO05D005357 3.7e-20 100.9 63 79.4
DCAR_028787 Daucus carota HOM05D004624 ORTHO05D005357 3.7e-20 100.9 58 84.5
Nitab4.5_0003447g0020 Nicotiana tabacum HOM05D004624 ORTHO05D005357 3.7e-20 100.9 62 77.4
Rhsim04G0113600 Rhododendron simsii HOM05D004624 ORTHO05D005357 3.7e-20 100.9 59 83.1
Nitab4.5_0000645g0040 Nicotiana tabacum HOM05D004624 ORTHO05D005357 4.9e-20 100.5 62 77.4
MD03G1113900 Malus domestica HOM05D004624 ORTHO05D005357 6.4e-20 100.1 61 82.0
GSVIVG01021751001 Vitis vinifera HOM05D004624 ORTHO05D005357 8.3e-20 99.8 58 79.3
CANSAT78G0048 Cannabis sativa HOM05D004624 ORTHO05D005357 1.1e-19 99.4 58 82.8
CANSAT78G2147 Cannabis sativa HOM05D004624 ORTHO05D005357 1.1e-19 99.4 58 82.8
TAR633G0121 Trochodendron aralioides HOM05D004624 ORTHO05D005357 1.1e-19 99.4 62 75.8
Manes.15G024800 Manihot esculenta HOM05D004624 ORTHO05D005357 1.4e-19 99.0 58 81.0
Nitab4.5_0002193g0050 Nicotiana tabacum HOM05D004624 ORTHO05D005357 1.8e-19 98.6 58 81.0
THA.LOC109116606 Tarenaya hassleriana HOM05D004624 ORTHO05D005357 1.8e-19 98.6 58 84.5
Sabra16G0054100 Salix brachista HOM05D004624 ORTHO05D005357 2.4e-19 98.2 62 77.4
Aqoxy3G02929 Aquilegia oxysepala HOM05D004624 ORTHO05D005357 3.2e-19 97.8 60 80.0
CAN.G732.25 Capsicum annuum HOM05D004624 ORTHO05D005357 3.2e-19 97.8 65 72.3
CARHR260420 Cardamine hirsuta HOM05D004624 ORTHO05D005357 3.2e-19 97.8 61 78.7
RcHm_v2.0_Chr7g0222161 Rosa chinensis HOM05D004624 ORTHO05D005357 3.2e-19 97.8 61 80.3
AL6G43100 Arabidopsis lyrata HOM05D004624 ORTHO05D005357 4.1e-19 97.4 61 78.7
AT4G09550 Arabidopsis thaliana HOM05D004624 ORTHO05D005357 4.1e-19 97.4 61 78.7
FvH4_5g29300 Fragaria vesca HOM05D004624 ORTHO05D005357 4.1e-19 97.4 61 80.3
FAN13G0550 Fragaria x ananassa HOM05D004624 ORTHO05D005357 4.1e-19 97.4 61 80.3
FAN18G4513 Fragaria x ananassa HOM05D004624 ORTHO05D005357 4.1e-19 97.4 61 80.3
Manes.10G062600 Manihot esculenta HOM05D004624 ORTHO05D005357 4.1e-19 97.4 58 81.0
Sc13g0000990 Simmondsia chinensis HOM05D004624 ORTHO05D005357 4.1e-19 97.4 58 81.0
CAN.G65.122 Capsicum annuum HOM05D004624 ORTHO05D005357 5.4e-19 97.1 60 78.3
COL.COLO4_37401 Corchorus olitorius HOM05D004624 ORTHO05D005357 5.4e-19 97.1 58 81.0
Prupe.8G075600 Prunus persica HOM05D004624 ORTHO05D005357 5.4e-19 97.1 61 82.0
Actinidia05484 Actinidia chinensis HOM05D004624 ORTHO05D005357 7.0e-19 96.7 61 82.0
Nitab4.5_0006185g0060 Nicotiana tabacum HOM05D004624 ORTHO05D005357 7.0e-19 96.7 60 75.0
Peaxi162Scf00815g00038 Petunia axillaris HOM05D004624 ORTHO05D005357 7.0e-19 96.7 62 74.2
Carub.0006s2800 Capsella rubella HOM05D004624 ORTHO05D005357 9.2e-19 96.3 61 78.7
Migut.J01335 Erythranthe guttata HOM05D004624 ORTHO05D005357 9.2e-19 96.3 60 76.7
Sp5g28970 Schrenkiella parvula HOM05D004624 ORTHO05D005357 1.2e-18 95.9 58 81.0
BcaB03g15728 Brassica carinata HOM05D004624 ORTHO05D005357 1.6e-18 95.5 58 81.0
BcaC08g46798 Brassica carinata HOM05D004624 ORTHO05D005357 1.6e-18 95.5 58 81.0
C06p33840 Brassica napus HOM05D004624 ORTHO05D005357 1.6e-18 95.5 58 81.0
C06p47930 Brassica napus HOM05D004624 ORTHO05D005357 1.6e-18 95.5 58 81.0
BolC6t39828H Brassica oleracea HOM05D004624 ORTHO05D005357 1.6e-18 95.5 58 81.0
BraA07t31513Z Brassica rapa HOM05D004624 ORTHO05D005357 1.6e-18 95.5 58 81.0
Cpa.g.sc883.1 Carica papaya HOM05D004624 ORTHO05D005357 1.6e-18 95.5 62 77.4
Nitab4.5_0006270g0030 Nicotiana tabacum HOM05D004624 ORTHO05D005357 1.6e-18 95.5 58 79.3
CDE05G2943 Ceratophyllum demersum HOM05D004624 ORTHO05D005357 2.0e-18 95.1 60 78.3
Thhalv10019414m.g Eutrema salsugineum HOM05D004624 ORTHO05D005357 2.0e-18 95.1 58 81.0
Sp6g08080 Schrenkiella parvula HOM05D004624 ORTHO05D005357 2.0e-18 95.1 61 77.0
BcaB03g15084 Brassica carinata HOM05D004624 ORTHO05D005357 2.7e-18 94.7 63 74.6
BraA07t30607Z Brassica rapa HOM05D004624 ORTHO05D005357 2.7e-18 94.7 58 81.0
QL04p073121 Quercus lobata HOM05D004624 ORTHO05D005357 2.7e-18 94.7 55 83.6
Aa31LG4G10460 Aethionema arabicum HOM05D004624 ORTHO05D005357 3.5e-18 94.4 58 79.3
BcaC08g45622 Brassica carinata HOM05D004624 ORTHO05D005357 3.5e-18 94.4 58 81.0
FAN08G1983 Fragaria x ananassa HOM05D004624 ORTHO05D005357 3.5e-18 94.4 61 78.7
PSO541G4755 Papaver somniferum HOM05D004624 ORTHO05D005357 3.5e-18 94.4 58 75.9
PSO675G0528 Papaver somniferum HOM05D004624 ORTHO05D005357 3.5e-18 94.4 58 75.9
Migut.J01336 Erythranthe guttata HOM05D004624 ORTHO05D005357 4.6e-18 94.0 58 77.6
HanXRQChr11g0352301 Helianthus annuus HOM05D004624 ORTHO05D005357 4.6e-18 94.0 60 76.7
RcHm_v2.0_Chr1g0330241 Rosa chinensis HOM05D004624 ORTHO05D005357 4.6e-18 94.0 61 77.0
Thecc.05G198400 Theobroma cacao HOM05D004624 ORTHO05D005357 4.6e-18 94.0 58 79.3
PSO063G3723 Papaver somniferum HOM05D004624 ORTHO05D005357 1.0e-17 92.8 58 74.1
ECA248G3900 Erigeron canadensis HOM05D004624 ORTHO05D005357 1.7e-17 92.0 60 73.3
ECA238G3634 Erigeron canadensis HOM05D000185 ORTHO05D000105 2.3e-17 91.7 61 73.8
SHI11762 Sapria himalayana HOM05D004624 ORTHO05D005357 3.0e-17 91.3 58 75.9
MBI17_g08328_MAGBIO Magnolia biondii HOM05D004624 ORTHO05D005357 1.1e-16 89.4 54 81.5
AL2G33600 Arabidopsis lyrata HOM05D004624 ORTHO05D005357 1.5e-16 89.0 58 72.4
AT1G73790 Arabidopsis thaliana HOM05D004624 ORTHO05D005357 1.5e-16 89.0 58 72.4
Carub.0002s2054 Capsella rubella HOM05D004624 ORTHO05D005357 1.5e-16 89.0 58 72.4
CARHR066880 Cardamine hirsuta HOM05D004624 ORTHO05D005357 4.3e-16 87.4 62 69.4
unitig_746.g26892 Utricularia gibba HOM05D004624 ORTHO05D005357 9.5e-16 86.3 57 73.7
Pp3c13_4560 Physcomitrium patens HOM05D004624 ORTHO05D005357 1.2e-15 85.9 62 69.4
Os03g0435900 Oryza sativa ssp. japonica HOM05D004624 ORTHO05D005357 1.0e-14 82.8 58 69.0
Os03g0824000 Oryza sativa ssp. japonica HOM05D004624 ORTHO05D005357 1.0e-14 82.8 58 69.0
Os11g0368172 Oryza sativa ssp. japonica HOM05D004624 ORTHO05D005357 1.0e-14 82.8 58 69.0
TAR627G0533 Trochodendron aralioides HOM05D004624 ORTHO05D005357 1.0e-14 82.8 59 69.5
PRCOL_00005147 Prasinoderma coloniale HOM05D004624 ORTHO05D005357 1.4e-14 82.4 58 70.7
Zm00001eb062930 Zea mays HOM05D004624 ORTHO05D005357 1.4e-14 82.4 58 69.0
EL10Ac4g09929 Beta vulgaris HOM05D004624 ORTHO05D005357 4.0e-14 80.9 55 70.9
CBR_g23420 Chara braunii HOM05D004624 ORTHO05D005357 6.8e-14 80.1 58 67.2
AagrBONN_evm.TU.Sc2ySwM_340.447 Anthoceros agrestis HOM05D004624 ORTHO05D005357 1.2e-13 79.3 58 65.5
SMO172G0211 Selaginella moellendorffii HOM05D004624 ORTHO05D005357 1.2e-13 79.3 55 72.7
Pp3c12_8260 Physcomitrium patens HOM05D004624 ORTHO05D005357 4.4e-13 77.4 58 69.0
Atru.chr12.1164 Acer truncatum HOM05D004624 ORTHO05D005357 9.8e-13 76.3 44 81.8
Solyc03g097400.1 Solanum lycopersicum HOM05D004624 ORTHO05D005357 9.8e-13 76.3 44 81.8
FvH4_2g13790 Fragaria vesca HOM05D004624 ORTHO05D005357 2.2e-12 75.1 56 69.6
FAN24G0569 Fragaria x ananassa HOM05D004624 ORTHO05D005357 2.2e-12 75.1 56 69.6
MD11G1133700 Malus domestica HOM05D004624 ORTHO05D005357 3.7e-12 74.3 43 86.0
Mapoly0109s0047 Marchantia polymorpha HOM05D004624 ORTHO05D005357 6.4e-12 73.6 58 63.8
MCO02G029 Micromonas commoda HOM05D004624 ORTHO05D005357 6.4e-12 73.6 58 63.8
SalBow6G5026 Salvia bowleyana HOM05D004624 ORTHO05D005357 1.4e-11 72.4 43 79.1
HPP92_018529 Vanilla planifolia HOM05D004624 ORTHO05D005357 1.2e-10 69.3 60 56.7
Solyc06g072690.3 Solanum lycopersicum HOM05D004624 ORTHO05D005357 2.0e-10 68.6 44 79.5
Cre14.g610000 Chlamydomonas reinhardtii HOM05D004624 ORTHO05D005357 1.5e-08 62.4 57 56.1
Lsat_1_v5_gn_1_43120 Lactuca sativa HOM05D004624 ORTHO05D005357 9.5e-08 59.7 34 79.4
Glyma.03G125300 Glycine max HOM05D004624 ORTHO05D005357 3.1e-06 54.7 35 77.1


User provided reference genes

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