Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_07679_v3 Cicer arietinum L. HOM05D004264 ORTHO05D004680 1.9e-26 121.7 60 100.0
Medtr1g100900 Medicago truncatula HOM05D004264 ORTHO05D004680 1.2e-23 112.5 60 90.0
Glyma.18G205200 Glycine max HOM05D004264 ORTHO05D004680 7.5e-23 109.8 60 86.7
TPR.G1155 Trifolium pratense HOM05D004264 ORTHO05D004680 3.7e-22 107.5 60 85.0
Glyma.07G154451 Glycine max HOM05D004264 ORTHO05D004680 8.3e-22 106.3 60 83.3
Lj3g0014192 Lotus japonicus HOM05D004264 ORTHO05D004680 3.2e-21 104.4 58 82.8
VMungo1383G0682 Vigna mungo HOM05D004264 ORTHO05D004680 9.2e-21 102.8 60 78.3
Phvul.008G094300 Phaseolus vulgaris HOM05D004264 ORTHO05D004680 1.2e-20 102.4 60 80.0
VMungo1215G3396 Vigna mungo HOM05D004264 ORTHO05D004680 2.0e-20 101.7 60 78.3
Psat3g124240 Pisum sativum HOM05D004264 ORTHO05D004680 1.0e-19 99.4 60 80.0
VMungo1383G0816 Vigna mungo HOM05D004264 ORTHO05D004680 1.3e-19 99.0 58 77.6
Lalb_Chr01g0023271 Lupinus albus HOM05D004264 ORTHO05D004680 1.9e-18 95.1 60 73.3
arahy.Tifrunner.gnm1.ann1.IC5F1T Arachis hypogaea HOM05D004264 ORTHO05D004680 4.3e-18 94.0 57 75.4
arahy.Tifrunner.gnm1.ann1.G0I7HS Arachis hypogaea HOM05D004264 ORTHO05D004680 1.6e-17 92.0 57 73.7
Cfa017136 Carpinus fangiana HOM05D004264 ORTHO05D004680 3.1e-16 87.8 59 64.4
Atru.chr8.2305 Acer truncatum HOM05D004264 ORTHO05D004680 4.0e-16 87.4 58 62.1
Haze_21060 Corylus avellana HOM05D004264 ORTHO05D004680 4.0e-16 87.4 59 62.7
ClCG04G006790 Citrullus lanatus HOM05D004264 ORTHO05D004680 1.5e-15 85.5 56 66.1
Oeu005191.1 Olea europaea HOM05D004264 ORTHO05D004680 3.4e-15 84.3 60 61.7
Cc05_g01720 Coffea canephora HOM05D004264 ORTHO05D004680 4.4e-15 84.0 58 67.2
Solyc04g072210.4 Solanum lycopersicum HOM05D004264 ORTHO05D004680 9.8e-15 82.8 58 62.1
Gohir.A01G229100 Gossypium hirsutum HOM05D004264 ORTHO05D004680 2.2e-14 81.6 56 57.1
Gohir.D01G219000 Gossypium hirsutum HOM05D004264 ORTHO05D004680 2.2e-14 81.6 56 57.1
Gorai.002G265700 Gossypium raimondii HOM05D004264 ORTHO05D004680 2.2e-14 81.6 56 57.1
CiPaw.09G213400 Carya illinoinensis HOM05D004264 ORTHO05D004680 2.9e-14 81.3 56 58.9
CsaV3_4G026470 Cucumis sativus L. HOM05D004264 ORTHO05D004680 2.9e-14 81.3 56 60.7
Dinv08428 Davidia involucrata HOM05D004264 ORTHO05D008966 3.7e-14 80.9 56 64.3
PGSC0003DMG400031135 Solanum tuberosum HOM05D004264 ORTHO05D004680 3.7e-14 80.9 58 60.3
ECA233G6002 Erigeron canadensis HOM05D004264 ORTHO05D004680 4.9e-14 80.5 58 62.1
FAN05G1725 Fragaria x ananassa HOM05D004264 ORTHO05D004680 4.9e-14 80.5 56 60.7
FAN05G1746 Fragaria x ananassa HOM05D004264 ORTHO05D004680 4.9e-14 80.5 56 60.7
FAN05G3264 Fragaria x ananassa HOM05D004264 ORTHO05D004680 4.9e-14 80.5 56 60.7
TAR623G1256 Trochodendron aralioides HOM05D004264 ORTHO05D004680 6.4e-14 80.1 56 62.5
AT3G08880 Arabidopsis thaliana HOM05D004264 ORTHO05D004680 8.3e-14 79.7 56 57.1
COL.COLO4_14480 Corchorus olitorius HOM05D004264 ORTHO05D004680 1.4e-13 79.0 57 54.4
FvH4_6g10921 Fragaria vesca HOM05D004264 ORTHO05D004680 1.4e-13 79.0 56 58.9
Thecc.05G009200 Theobroma cacao HOM05D004264 ORTHO05D004680 1.4e-13 79.0 56 57.1
FAN02G3507 Fragaria x ananassa HOM05D004264 ORTHO05D004680 1.9e-13 78.6 56 58.9
FAN09G4226 Fragaria x ananassa HOM05D004264 ORTHO05D004680 1.9e-13 78.6 56 58.9
Potri.016G122350 Populus trichocarpa HOM05D004264 ORTHO05D004680 2.4e-13 78.2 57 57.9
Sed0006342 Sechium edule HOM05D004264 ORTHO05D004680 2.4e-13 78.2 55 63.6
Sp3g07270 Schrenkiella parvula HOM05D004264 ORTHO05D004680 3.2e-13 77.8 56 55.4
RcHm_v2.0_Chr3g0462171 Rosa chinensis HOM05D004264 ORTHO05D004680 4.1e-13 77.4 56 57.1
TWI74G1571 Tripterygium wilfordii HOM05D004264 ORTHO05D004680 4.1e-13 77.4 56 58.9
BcaC09g47997 Brassica carinata HOM05D004264 ORTHO05D004680 5.4e-13 77.0 56 53.6
BcaC09g48040 Brassica carinata HOM05D004264 ORTHO05D004680 5.4e-13 77.0 57 52.6
BNapus_Darmor_BZH_scaffold_167p00190 Brassica napus HOM05D004264 ORTHO05D004680 5.4e-13 77.0 57 52.6
Thhalv10021618m.g Eutrema salsugineum HOM05D004264 ORTHO05D004680 5.4e-13 77.0 56 55.4
BraA01t04327Z Brassica rapa HOM05D004264 ORTHO05D004680 7.1e-13 76.6 57 52.6
Duzib093G0558 Durio zibethinus HOM05D004264 ORTHO05D004680 7.1e-13 76.6 58 56.9
Manes.09G110101 Manihot esculenta HOM05D004264 ORTHO05D004680 7.1e-13 76.6 56 58.9
Peaxi162Scf00522g00315 Petunia axillaris HOM05D004264 ORTHO05D004680 7.1e-13 76.6 58 56.9
Ah.12g058940 Amaranthus hybridus HOM05D004264 ORTHO05D004680 9.2e-13 76.3 56 64.3
PSO339G3729 Papaver somniferum HOM05D004264 ORTHO05D004680 9.2e-13 76.3 59 61.0
Potri.012G107200 Populus trichocarpa HOM05D004264 ORTHO05D004680 9.2e-13 76.3 56 57.1
Rhsim05G0223700 Rhododendron simsii HOM05D004264 ORTHO05D004680 9.2e-13 76.3 57 56.1
Duzib106G1969 Durio zibethinus HOM05D004264 ORTHO05D004680 1.2e-12 75.9 55 56.4
PGR004G2045 Punica granatum HOM05D004264 ORTHO05D004680 1.2e-12 75.9 57 59.6
Carub.0003s0799 Capsella rubella HOM05D004264 ORTHO05D004680 1.6e-12 75.5 56 53.6
Hma1.2p1_0479F.1_g161540 Hydrangea macrophylla HOM05D004264 ORTHO05D004680 1.6e-12 75.5 56 57.1
MBI10_g27417_MAGBIO Magnolia biondii HOM05D004264 ORTHO05D004680 1.6e-12 75.5 53 60.4
PSO801G0087 Papaver somniferum HOM05D004264 ORTHO05D004680 1.6e-12 75.5 59 61.0
AL3G19870 Arabidopsis lyrata HOM05D004264 ORTHO05D004680 2.1e-12 75.1 56 53.6
CANSAT35G1133 Cannabis sativa HOM05D004264 ORTHO05D004680 2.1e-12 75.1 58 56.9
HanXRQChr02g0036821 Helianthus annuus HOM05D004264 ORTHO05D004680 2.1e-12 75.1 55 58.2
Actinidia11558 Actinidia chinensis HOM05D004264 ORTHO05D004680 2.7e-12 74.7 57 54.4
Actinidia29078 Actinidia chinensis HOM05D004264 ORTHO05D004680 3.5e-12 74.3 57 52.6
THA.LOC104816187 Tarenaya hassleriana HOM05D004264 ORTHO05D004680 3.5e-12 74.3 56 51.8
AL6G10480 Arabidopsis lyrata HOM05D004264 ORTHO05D004680 4.6e-12 73.9 56 53.6
HanXRQChr13g0390251 Helianthus annuus HOM05D004264 ORTHO05D004680 7.8e-12 73.2 55 58.2
MD04G1163700 Malus domestica HOM05D004264 ORTHO05D004680 7.8e-12 73.2 58 55.2
Sabra16G0118000 Salix brachista HOM05D004264 ORTHO05D004680 7.8e-12 73.2 52 59.6
EL10Ac5g12510 Beta vulgaris HOM05D004264 ORTHO05D004680 1.0e-11 72.8 58 56.9
DCAR_015367 Daucus carota HOM05D004264 ORTHO05D004680 1.0e-11 72.8 58 56.9
CARHR083200 Cardamine hirsuta HOM05D004264 ORTHO05D004680 1.7e-11 72.0 56 51.8
AUR62030782 Chenopodium quinoa HOM05D004264 ORTHO05D004680 2.3e-11 71.6 56 55.4
MD12G1177600 Malus domestica HOM05D004264 ORTHO05D004680 2.3e-11 71.6 58 51.7
DCAR_018675 Daucus carota HOM05D004264 ORTHO05D004680 3.0e-11 71.2 59 59.3
Oeu041877.1 Olea europaea HOM05D004264 ORTHO05D004680 3.0e-11 71.2 53 62.3
Oeu041878.1 Olea europaea HOM05D004264 ORTHO05D004680 3.0e-11 71.2 53 62.3
THA.LOC104827057 Tarenaya hassleriana HOM05D004264 ORTHO05D004680 3.0e-11 71.2 58 50.0
Nn8g40771 Nelumbo nucifera HOM05D004264 ORTHO05D004680 3.9e-11 70.9 56 53.6
Carub.0006s0026 Capsella rubella HOM05D004264 ORTHO05D004680 5.1e-11 70.5 56 50.0
Lsat_1_v5_gn_6_104820 Lactuca sativa HOM05D004264 ORTHO05D004680 5.1e-11 70.5 61 55.7
unitig_0.g2545 Utricularia gibba HOM05D004264 ORTHO05D004680 6.6e-11 70.1 56 55.4
AUR62030512 Chenopodium quinoa HOM05D004264 ORTHO05D004680 8.6e-11 69.7 56 57.1
Aqoxy3G03064 Aquilegia oxysepala HOM05D004264 ORTHO05D004680 1.5e-10 68.9 56 55.4
Hund14916 Selenicereus undatus HOM05D004264 ORTHO05D004680 1.5e-10 68.9 56 51.8
Migut.J00116 Erythranthe guttata HOM05D004264 ORTHO05D004680 1.9e-10 68.6 58 58.6
Os04g0445400 Oryza sativa ssp. japonica HOM05D004264 ORTHO05D004680 1.1e-08 62.8 56 50.0
SEGI_36861 Sequoiadendron giganteum HOM05D004264 ORTHO05D004680 1.8e-08 62.0 58 41.4
SEGI_24150 Sequoiadendron giganteum HOM05D004264 ORTHO05D004680 3.1e-08 61.2 58 41.4
Zm00001eb068100 Zea mays HOM05D004264 ORTHO05D004680 4.0e-08 60.8 55 49.1
CSS0010779 Camellia sinensis var. sinensis HOM05D004264 ORTHO05D004680 6.8e-08 60.1 40 67.5
AT5G01570 Arabidopsis thaliana HOM05D004264 ORTHO05D004680 2.0e-07 58.5 55 47.3
MBI03_g10315_MAGBIO Magnolia biondii HOM05D004264 ORTHO05D004680 4.4e-07 57.4 42 57.1


User provided reference genes

Program Settings