Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_07663_v3 Cicer arietinum L. HOM05D004746 ORTHO05D005863 0.0e+00 1966.8 1010 100.0
Psat3g125960 Pisum sativum HOM05D004746 ORTHO05D005863 0.0e+00 1881.7 1010 95.4
TPR.G35441 Trifolium pratense HOM05D004746 ORTHO05D005863 0.0e+00 1856.6 1010 94.0
Medtr7g069460 Medicago truncatula HOM05D004746 ORTHO05D005863 0.0e+00 1831.6 1010 92.8
Glyma.18G203900 Glycine max HOM05D004746 ORTHO05D005863 0.0e+00 1830.1 1008 92.2
Lj1g0027952 Lotus japonicus HOM05D004746 ORTHO05D005863 0.0e+00 1816.2 1010 90.8
VMungo1383G1310 Vigna mungo HOM05D004746 ORTHO05D005863 0.0e+00 1812.7 1010 91.1
Phvul.008G095700 Phaseolus vulgaris HOM05D004746 ORTHO05D005863 0.0e+00 1808.9 1010 90.9
Glyma.07G152800 Glycine max HOM05D004746 ORTHO05D005863 0.0e+00 1800.0 1008 90.7
Lalb_Chr19g0124371 Lupinus albus HOM05D004746 ORTHO05D005863 0.0e+00 1746.9 1008 88.1
arahy.Tifrunner.gnm1.ann1.R9K5QN Arachis hypogaea HOM05D004746 ORTHO05D005863 0.0e+00 1745.3 1010 87.7
arahy.Tifrunner.gnm1.ann1.U1NNDF Arachis hypogaea HOM05D004746 ORTHO05D005863 0.0e+00 1720.7 1010 86.6
Manes.09G106500 Manihot esculenta HOM05D004746 ORTHO05D005863 0.0e+00 1654.0 1012 82.1
Atru.chr8.2277 Acer truncatum HOM05D004746 ORTHO05D005863 0.0e+00 1636.7 1012 81.2
Ciclev10010971m.g Citrus clementina HOM05D004746 ORTHO05D005863 0.0e+00 1628.2 1010 81.3
Thecc.05G012200 Theobroma cacao HOM05D004746 ORTHO05D005863 0.0e+00 1622.4 1013 80.3
Duzib093G0324 Durio zibethinus HOM05D004746 ORTHO05D005863 0.0e+00 1613.6 1012 79.7
Duzib128G0341 Durio zibethinus HOM05D004746 ORTHO05D005863 0.0e+00 1611.7 1011 79.6
QL07p034923 Quercus lobata HOM05D004746 ORTHO05D005863 0.0e+00 1611.7 1011 80.9
Potri.016G119900 Populus trichocarpa HOM05D004746 ORTHO05D005863 0.0e+00 1595.9 1012 79.6
FvH4_4g00010 Fragaria vesca HOM05D004746 ORTHO05D005863 0.0e+00 1594.7 1009 78.6
Gorai.012G116700 Gossypium raimondii HOM05D004746 ORTHO05D005863 0.0e+00 1593.9 1012 78.3
Gohir.D04G132800 Gossypium hirsutum HOM05D004746 ORTHO05D005863 0.0e+00 1592.8 1012 78.4
Gorai.002G262500 Gossypium raimondii HOM05D004746 ORTHO05D005863 0.0e+00 1589.7 1012 78.7
Gohir.A01G226580 Gossypium hirsutum HOM05D004746 ORTHO05D005863 0.0e+00 1587.0 1015 78.5
Gohir.A04G093500 Gossypium hirsutum HOM05D004746 ORTHO05D005863 0.0e+00 1586.2 1010 78.1
PGR031G3962 Punica granatum HOM05D004746 ORTHO05D005863 0.0e+00 1585.1 1010 78.7
TWI74G1023 Tripterygium wilfordii HOM05D004746 ORTHO05D005863 0.0e+00 1577.8 1041 76.2
CSS0006394 Camellia sinensis var. sinensis HOM05D004746 ORTHO05D005863 0.0e+00 1576.2 1011 79.0
CSS0013285 Camellia sinensis var. sinensis HOM05D004746 ORTHO05D005863 0.0e+00 1573.1 1011 78.9
Aa31LG5G18930 Aethionema arabicum HOM05D004746 ORTHO05D005863 0.0e+00 1554.3 1011 76.3
Thhalv10019980m.g Eutrema salsugineum HOM05D004746 ORTHO05D005863 0.0e+00 1551.6 1011 76.9
FAN22G0460 Fragaria x ananassa HOM05D004746 ORTHO05D005863 0.0e+00 1550.4 1014 76.8
FAN17G1409 Fragaria x ananassa HOM05D004746 ORTHO05D005863 0.0e+00 1549.6 1014 76.6
THA.LOC104823290 Tarenaya hassleriana HOM05D004746 ORTHO05D005863 0.0e+00 1549.6 1011 76.2
AL3G19980 Arabidopsis lyrata HOM05D004746 ORTHO05D005863 0.0e+00 1549.3 1011 76.7
A05p39880 Brassica napus HOM05D004746 ORTHO05D005863 0.0e+00 1548.9 1011 76.2
BolC5t34545H Brassica oleracea HOM05D004746 ORTHO05D005863 0.0e+00 1548.9 1011 76.1
Eucgr.A00543 Eucalyptus grandis HOM05D004746 ORTHO05D005863 0.0e+00 1548.1 1008 76.3
C05p58920 Brassica napus HOM05D004746 ORTHO05D005863 0.0e+00 1546.2 1011 76.0
BraSC256t45936Z Brassica rapa HOM05D004746 ORTHO05D005863 0.0e+00 1545.4 1011 76.0
Sp3g07380 Schrenkiella parvula HOM05D004746 ORTHO05D005863 0.0e+00 1539.6 1011 75.8
BolC3t16657H Brassica oleracea HOM05D004746 ORTHO05D005863 0.0e+00 1538.9 1012 75.9
AT3G08960 Arabidopsis thaliana HOM05D004746 ORTHO05D005863 0.0e+00 1538.5 1011 76.3
C03p43890 Brassica napus HOM05D004746 ORTHO05D005863 0.0e+00 1538.5 1012 75.8
Actinidia11569 Actinidia chinensis HOM05D004746 ORTHO05D005863 0.0e+00 1532.7 1009 76.7
Gohir.D01G216252 Gossypium hirsutum HOM05D004746 ORTHO05D005863 0.0e+00 1529.2 1011 76.7
Nn2g10907 Nelumbo nucifera HOM05D004746 ORTHO05D005863 0.0e+00 1529.2 1017 75.5
A03p36250 Brassica napus HOM05D004746 ORTHO05D005863 0.0e+00 1528.5 1012 75.3
BraA03t12796Z Brassica rapa HOM05D004746 ORTHO05D005863 0.0e+00 1526.1 1012 75.2
Carub.0003s0809 Capsella rubella HOM05D004746 ORTHO05D005863 0.0e+00 1521.9 1011 75.6
CANSAT56G3938 Cannabis sativa HOM05D004746 ORTHO05D005863 0.0e+00 1514.2 1013 76.2
PSO339G1342 Papaver somniferum HOM05D004746 ORTHO05D005863 0.0e+00 1501.1 1009 74.8
CsaV3_3G021150 Cucumis sativus L. HOM05D004746 ORTHO05D005863 0.0e+00 1500.0 1015 74.9
Sed0023855 Sechium edule HOM05D004746 ORTHO05D005863 0.0e+00 1500.0 1015 74.8
Cc06_g01090 Coffea canephora HOM05D004746 ORTHO05D005863 0.0e+00 1497.6 1009 74.2
EL10Ac5g12532 Beta vulgaris HOM05D004746 ORTHO05D005863 0.0e+00 1496.5 1009 73.7
Sopen09g001110 Solanum pennellii HOM05D004746 ORTHO05D005863 0.0e+00 1496.5 1011 73.9
MELO3C020253.2 Cucumis melo HOM05D004746 ORTHO05D005863 0.0e+00 1494.9 1015 75.1
TWI77G0319 Tripterygium wilfordii HOM05D004746 ORTHO05D005863 0.0e+00 1486.9 1011 74.7
Oeu033576.1 Olea europaea HOM05D004746 ORTHO05D005863 0.0e+00 1482.2 1073 70.4
PSO801G0820 Papaver somniferum HOM05D004746 ORTHO05D005863 0.0e+00 1481.1 1009 74.0
CiPaw.09G211600 Carya illinoinensis HOM05D004746 ORTHO05D005863 0.0e+00 1475.3 1012 75.1
vmacro20299 Vaccinium macrocarpon HOM05D004746 ORTHO05D005863 0.0e+00 1474.9 1080 70.3
Ah.02g115550 Amaranthus hybridus HOM05D004746 ORTHO05D005863 0.0e+00 1470.3 1024 72.4
AUR62030473 Chenopodium quinoa HOM05D004746 ORTHO05D005863 0.0e+00 1469.5 1015 71.7
Lsat_1_v5_gn_8_100840 Lactuca sativa HOM05D004746 ORTHO05D005863 0.0e+00 1466.1 1009 73.6
Cfa017175 Carpinus fangiana HOM05D004746 ORTHO05D005863 0.0e+00 1464.9 914 80.6
ECA236G1680 Erigeron canadensis HOM05D004746 ORTHO05D005863 0.0e+00 1462.6 1008 73.7
MSTRG.10207 Avicennia marina HOM05D004746 ORTHO05D005863 0.0e+00 1460.3 1011 72.7
HanXRQChr12g0383171 Helianthus annuus HOM05D004746 ORTHO05D005863 0.0e+00 1458.4 998 74.0
Migut.J00134 Erythranthe guttata HOM05D004746 ORTHO05D005863 0.0e+00 1456.0 1008 72.9
Aqoxy7G03079 Aquilegia oxysepala HOM05D004746 ORTHO05D005863 0.0e+00 1452.6 1010 70.6
DCAR_018683 Daucus carota HOM05D004746 ORTHO05D005863 0.0e+00 1448.7 1041 70.5
Dinv13139 Davidia involucrata HOM05D004746 ORTHO05D005863 0.0e+00 1448.7 914 78.9
Gohir.D01G216126 Gossypium hirsutum HOM05D004746 ORTHO05D005863 0.0e+00 1446.8 1027 73.4
Hund10978 Selenicereus undatus HOM05D004746 ORTHO05D005863 0.0e+00 1441.0 1009 71.8
DCAR_015390 Daucus carota HOM05D004746 ORTHO05D005863 0.0e+00 1438.3 1008 71.3
Actinidia29088 Actinidia chinensis HOM05D004746 ORTHO05D005863 0.0e+00 1429.1 992 74.2
SGA_v2.0_scaffold85G26719 Striga asiatica HOM05D004746 ORTHO05D005863 0.0e+00 1428.3 1070 69.2
Sabra16G0115800 Salix brachista HOM05D004746 ORTHO05D005863 0.0e+00 1427.9 1092 68.9
Oeu063393.2 Olea europaea HOM05D004746 ORTHO05D005863 0.0e+00 1424.5 1146 65.1
Haze_21030 Corylus avellana HOM05D004746 ORTHO05D005863 0.0e+00 1411.7 1031 72.8
AUR62010444 Chenopodium quinoa HOM05D004746 ORTHO05D005863 0.0e+00 1393.6 1009 70.2
Sc01g0006870 Simmondsia chinensis HOM05D004746 ORTHO05D005863 0.0e+00 1362.1 896 74.3
BcaC01g04209 Brassica carinata HOM05D004746 ORTHO05D005863 0.0e+00 1351.7 1012 68.7
Peaxi162Scf01132g00141 Petunia axillaris HOM05D004746 ORTHO05D005863 0.0e+00 1338.9 1017 67.6
BcaC05g29630 Brassica carinata HOM05D004746 ORTHO05D005863 0.0e+00 1317.0 1001 67.9
MBI01_g40022_MAGBIO Magnolia biondii HOM05D004746 ORTHO05D005863 0.0e+00 1307.0 933 70.0
ATR0681G361 Amborella trichopoda HOM05D004746 ORTHO05D005863 0.0e+00 1301.2 1016 64.8
unitig_26.g9084 Utricularia gibba HOM05D004746 ORTHO05D005863 0.0e+00 1287.3 1017 64.8
CARHR083300 Cardamine hirsuta HOM05D004746 ORTHO05D005863 0.0e+00 1286.2 835 76.0
CDE08G1427 Ceratophyllum demersum HOM05D004746 ORTHO05D005863 0.0e+00 1266.9 1016 64.2
HPP92_001120 Vanilla planifolia HOM05D004746 ORTHO05D005863 0.0e+00 1182.2 1015 60.6
Cpa.g.sc120.53 Carica papaya HOM05D004746 ORTHO05D005863 0.0e+00 1177.9 864 70.6
Zm00001eb111960 Zea mays HOM05D004746 ORTHO05D005863 0.0e+00 1158.3 964 60.9
SEGI_16247 Sequoiadendron giganteum HOM05D004746 ORTHO05D005863 4.4e-309 1064.7 882 58.8
Lj3C949T2 Lonicera japonica HOM05D004746 ORTHO05D005863 4.9e-308 1061.2 822 67.3
Nitab4.5_0000195g0230 Nicotiana tabacum HOM05D004746 ORTHO05D005863 5.8e-293 1011.1 726 70.4
MD04G1000200 Malus domestica HOM05D004746 ORTHO05D005863 1.9e-288 996.1 611 78.9
TAR633G1894 Trochodendron aralioides HOM05D004746 ORTHO05D005863 1.6e-287 993.0 611 79.1
Mapoly0056s0005 Marchantia polymorpha HOM05D004746 ORTHO05D005863 4.9e-284 981.5 1026 49.4
Nitab4.5_0009417g0010 Nicotiana tabacum HOM05D004746 ORTHO05D005863 1.2e-282 976.9 704 70.6
Pp3c2_22550 Physcomitrium patens HOM05D004746 ORTHO05D005863 9.6e-280 967.2 1017 49.6
Pp3c14_210 Physcomitrium patens HOM05D004746 ORTHO05D005863 3.7e-279 965.3 1018 49.0
Prupe.1G000100 Prunus persica HOM05D004746 ORTHO05D005863 2.6e-253 879.4 617 71.6
AagrBONN_evm.TU.Sc2ySwM_362.215 Anthoceros agrestis HOM05D004746 ORTHO05D005863 8.5e-252 874.4 991 47.2
Dinv16905 Davidia involucrata HOM05D004746 ORTHO05D005863 4.7e-242 842.0 537 78.2
GSVIVG01003938001 Vitis vinifera HOM05D004746 ORTHO05D005863 1.1e-238 830.9 508 81.5
COL.COLO4_14503 Corchorus olitorius HOM05D004746 ORTHO05D005863 9.1e-238 827.8 507 79.3
SMO241G0033 Selaginella moellendorffii HOM05D004746 ORTHO05D005863 2.0e-237 826.6 1036 42.9
FAN12G3124 Fragaria x ananassa HOM05D004746 ORTHO05D005863 1.6e-229 800.4 507 77.5
GSVIVG01003936001 Vitis vinifera HOM05D004746 ORTHO05D005863 4.7e-226 788.9 504 79.8
SMO232G0101 Selaginella moellendorffii HOM05D004746 ORTHO05D005863 3.9e-212 742.7 1019 40.8
Os07g0693400 Oryza sativa ssp. japonica HOM05D004746 ORTHO05D005863 5.1e-196 689.1 1016 42.0
ClCG05G011310 Citrullus lanatus HOM05D004746 ORTHO05D005863 1.0e-188 664.8 486 72.4
MD04G1000400 Malus domestica HOM05D004746 ORTHO05D005863 7.9e-165 585.5 393 76.1
ClCG05G011270 Citrullus lanatus HOM05D004746 ORTHO05D005863 1.2e-141 508.4 545 52.5
Glyma.16G097152 Glycine max HOM05D004746 ORTHO05D005863 1.8e-132 478.0 280 91.4
Glyma.16G097102 Glycine max HOM05D004746 ORTHO05D005863 3.0e-132 477.2 303 79.9
PRCOL_00000669 Prasinoderma coloniale HOM05D004746 ORTHO05D005863 5.0e-127 459.9 1041 30.2
Rhsim05G0217800 Rhododendron simsii HOM05D004746 ORTHO05D005863 6.5e-127 459.5 414 58.9
Prupe.1G000300 Prunus persica HOM05D004746 ORTHO05D005863 3.3e-123 447.2 385 63.1
PGSC0003DMG400006259 Solanum tuberosum HOM05D004746 ORTHO05D005863 9.7e-123 445.7 311 73.6
HPP92_001053 Vanilla planifolia HOM05D004746 ORTHO05D005863 6.3e-122 443.0 389 58.9
HPP92_001054 Vanilla planifolia HOM05D004746 ORTHO05D005863 1.0e-116 425.6 403 55.6
Dinv16904 Davidia involucrata HOM05D004746 ORTHO05D005863 1.8e-108 398.3 468 51.7
Psat2g043480 Pisum sativum HOM05D004746 ORTHO05D005863 1.7e-103 381.7 232 88.4
Cre02.g078885 Chlamydomonas reinhardtii HOM05D004746 ORTHO05D005863 9.5e-102 375.9 1161 26.9
Os03g0292900 Oryza sativa ssp. japonica HOM05D004746 ORTHO05D005863 2.5e-86 324.7 302 54.6
Lsat_1_v5_gn_5_53800 Lactuca sativa HOM05D004746 ORTHO05D005863 2.3e-71 275.0 213 64.8
CBR_g44564 Chara braunii HOM05D000019 ORTHO05D000048 5.6e-70 270.4 310 44.2
Lj3A949T17 Lonicera japonica HOM05D004746 ORTHO05D005863 5.1e-63 247.3 216 63.4
ClCG05G011300 Citrullus lanatus HOM05D004746 ORTHO05D005863 8.7e-63 246.5 141 85.1
Glyma.16G097051 Glycine max HOM05D004746 ORTHO05D005863 3.9e-55 221.1 126 88.9
CBR_g44557 Chara braunii HOM05D004746 ORTHO05D005863 4.0e-52 211.1 177 59.9
CDE04G0811 Ceratophyllum demersum HOM05D000083 ORTHO05D000196 8.4e-42 176.8 129 70.5
CAN.G5.2 Capsicum annuum HOM05D004746 ORTHO05D005863 5.5e-41 174.1 134 70.9
Lsat_1_v5_gn_5_87500 Lactuca sativa HOM05D004746 ORTHO05D005863 1.0e-31 143.3 179 48.6
COL.COLO4_14504 Corchorus olitorius HOM05D004746 ORTHO05D005863 3.0e-31 141.7 88 76.1
Psat0ss9382g0120 Pisum sativum HOM05D002370 ORTHO05D003878 1.1e-30 139.8 84 84.5
Psat3g181680 Pisum sativum HOM05D004746 ORTHO05D005863 7.4e-30 137.1 78 91.0
CBR_g44565 Chara braunii HOM05D004746 ORTHO05D001702 5.3e-28 131.0 183 39.9
CAN.G5.1 Capsicum annuum HOM05D004746 ORTHO05D005863 3.4e-27 128.3 92 68.5
Lsat_1_v5_gn_5_55000 Lactuca sativa HOM05D004746 ORTHO05D005863 5.9e-27 127.5 91 69.2
Psat2g086560 Pisum sativum HOM05D004629 ORTHO05D002382 4.2e-25 121.3 152 50.7
CAN.G610.28 Capsicum annuum HOM05D004746 ORTHO05D005863 9.4e-25 120.2 78 76.9
Lj3A949T18 Lonicera japonica HOM05D004746 ORTHO05D005863 3.0e-23 115.2 76 71.1
MD14G1122700 Malus domestica HOM05D000325 ORTHO05D001655 1.8e-20 105.9 121 50.4
Lsat_1_v5_gn_6_87921 Lactuca sativa HOM05D004228 ORTHO05D005137 1.2e-19 103.2 107 55.1
SEGI_11102 Sequoiadendron giganteum HOM05D004746 ORTHO05D005863 2.1e-16 92.4 123 43.9
SalBow5G0496 Salvia bowleyana HOM05D004746 ORTHO05D005863 1.4e-15 89.7 76 60.5
FAN17G0995 Fragaria x ananassa HOM05D004746 ORTHO05D005863 8.8e-15 87.0 56 73.2
MBI01_g36267_MAGBIO Magnolia biondii HOM05D004746 ORTHO05D005863 2.0e-11 75.9 45 80.0
CBR_g44559 Chara braunii HOM05D000019 ORTHO05D000353 3.5e-11 75.1 98 41.8
Psat0s1759g0080 Pisum sativum HOM05D001955 ORTHO05D001917 7.7e-11 73.9 39 89.7
Cre02.g084650 Chlamydomonas reinhardtii HOM05D004746 ORTHO05D146592 1.5e-09 69.7 561 19.6
Cpa.g.sc120.51 Carica papaya HOM05D004746 ORTHO05D005863 1.9e-09 69.3 47 72.3
Mapoly0014s0213 Marchantia polymorpha HOM05D002786 ORTHO05D003493 5.5e-09 67.8 174 29.3
AL1G39580 Arabidopsis lyrata HOM05D001046 ORTHO05D005883 1.2e-08 66.6 121 33.9
Zm00001eb184170 Zea mays HOM05D005341 ORTHO05D006712 2.7e-08 65.5 47 59.6
AT1G26170 Arabidopsis thaliana HOM05D001046 ORTHO05D005883 4.7e-08 64.7 121 33.1
CAN.G740.7 Capsicum annuum HOM05D004746 ORTHO05D005863 6.1e-08 64.3 47 68.1
Sp1g22490 Schrenkiella parvula HOM05D001046 ORTHO05D005883 1.4e-07 63.2 121 33.1
CARHR025740 Cardamine hirsuta HOM05D001046 ORTHO05D005883 2.3e-07 62.4 159 32.1
A07p12760 Brassica napus HOM05D001046 ORTHO05D005883 3.0e-07 62.0 126 32.5
PSO017G2748 Papaver somniferum HOM05D001046 ORTHO05D005883 5.2e-07 61.2 143 26.6
PSO478G0796 Papaver somniferum HOM05D001046 ORTHO05D005883 5.2e-07 61.2 143 26.6
Cfa026283 Carpinus fangiana HOM05D002786 ORTHO05D003493 8.8e-07 60.5 141 24.8
AagrBONN_evm.TU.Sc2ySwM_344.2799 Anthoceros agrestis HOM05D002786 ORTHO05D003493 3.3e-06 58.5 152 27.6
ATR0609G059 Amborella trichopoda HOM05D002786 ORTHO05D003493 4.4e-06 58.2 150 26.0
Oeu013400.2 Olea europaea HOM05D002786 ORTHO05D010194 5.7e-06 57.8 186 26.9
Pp3c15_21650 Physcomitrium patens HOM05D002786 ORTHO05D003493 5.7e-06 57.8 173 26.6
ECA233G2610 Erigeron canadensis HOM05D002786 ORTHO05D003493 9.7e-06 57.0 192 24.5


User provided reference genes

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