Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_07614_v3 Cicer arietinum L. HOM05D005866 ORTHO05D007078 3.7e-135 485.0 258 100.0
TPR.G1580 Trifolium pratense HOM05D005866 ORTHO05D007078 1.7e-108 396.4 258 81.8
Medtr7g067000 Medicago truncatula HOM05D005866 ORTHO05D007078 1.9e-107 392.9 258 82.2
Psat3g131120 Pisum sativum HOM05D005866 ORTHO05D007078 4.3e-107 391.7 258 83.3
Lj1g0011685 Lotus japonicus HOM05D005866 ORTHO05D007078 2.2e-95 352.8 258 74.0
Glyma.07G145800 Glycine max HOM05D005866 ORTHO05D007078 1.1e-94 350.5 258 73.6
VMungo1383G0141 Vigna mungo HOM05D005866 ORTHO05D007078 3.7e-87 325.5 258 69.8
Glyma.18G197300 Glycine max HOM05D005866 ORTHO05D007078 1.1e-86 323.9 240 72.9
arahy.Tifrunner.gnm1.ann1.Q1H550 Arachis hypogaea HOM05D005866 ORTHO05D007078 1.9e-83 313.2 258 70.5
Phvul.008G107300 Phaseolus vulgaris HOM05D005866 ORTHO05D007078 4.4e-80 302.0 258 67.4
arahy.Tifrunner.gnm1.ann1.LP8IIZ Arachis hypogaea HOM05D005866 ORTHO05D007078 9.9e-80 300.8 258 68.6
arahy.Tifrunner.gnm1.ann1.QNAF0W Arachis hypogaea HOM05D005866 ORTHO05D007078 8.1e-74 281.2 258 65.1
Potri.006G096700 Populus trichocarpa HOM05D005866 ORTHO05D007078 1.9e-70 270.0 256 60.5
Lj3g0009346 Lotus japonicus HOM05D005866 ORTHO05D007078 2.4e-70 269.6 241 65.1
arahy.Tifrunner.gnm1.ann1.6JA19R Arachis hypogaea HOM05D005866 ORTHO05D007078 6.2e-66 255.0 215 68.8
Lalb_Chr07g0193301 Lupinus albus HOM05D005866 ORTHO05D007078 1.1e-62 244.2 240 61.2
Psat7g247600 Pisum sativum HOM05D005866 ORTHO05D007078 3.2e-62 242.7 250 60.4
Gohir.D01G215200 Gossypium hirsutum HOM05D005866 ORTHO05D007078 1.3e-60 237.3 261 55.6
CiPaw.09G206400 Carya illinoinensis HOM05D005866 ORTHO05D007078 5.3e-57 225.3 246 55.3
arahy.Tifrunner.gnm1.ann1.T33YJ3 Arachis hypogaea HOM05D005866 ORTHO05D007078 2.2e-55 219.9 252 58.3
FAN14G3518 Fragaria x ananassa HOM05D005866 ORTHO05D007078 3.8e-55 219.2 265 50.6
CsaV3_4G026010 Cucumis sativus L. HOM05D005866 ORTHO05D007078 4.9e-55 218.8 241 55.2
arahy.Tifrunner.gnm1.ann1.F83RTD Arachis hypogaea HOM05D005866 ORTHO05D007078 6.5e-55 218.4 252 57.9
Aqoxy1G00701 Aquilegia oxysepala HOM05D005866 ORTHO05D007078 1.1e-54 217.6 248 54.8
MD04G1147400 Malus domestica HOM05D005866 ORTHO05D007078 1.1e-54 217.6 261 51.7
Aa31LG3G1580 Aethionema arabicum HOM05D005866 ORTHO05D007078 7.1e-54 214.9 234 53.0
AUR62042946 Chenopodium quinoa HOM05D005866 ORTHO05D007078 9.3e-54 214.5 243 51.0
ECA247G0127 Erigeron canadensis HOM05D005866 ORTHO05D007078 7.9e-53 211.5 263 47.5
Atru.chr8.2203 Acer truncatum HOM05D005866 ORTHO05D007078 2.3e-52 209.9 264 50.8
BraA01t04319Z Brassica rapa HOM05D005866 ORTHO05D007078 8.7e-52 208.0 233 52.4
Sabra06G0074300 Salix brachista HOM05D005866 ORTHO05D007078 7.4e-51 204.9 258 48.1
FAN09G2814 Fragaria x ananassa HOM05D000012 ORTHO05D007078 1.6e-50 203.8 264 47.7
Thecc.05G021700 Theobroma cacao HOM05D005866 ORTHO05D007078 2.1e-50 203.4 262 50.8
Dinv14530 Davidia involucrata HOM05D005866 ORTHO05D007078 4.8e-50 202.2 260 50.0
Dinv35509 Davidia involucrata HOM05D005866 ORTHO05D007078 4.8e-50 202.2 260 50.0
Lj2C80T14 Lonicera japonica HOM05D005866 ORTHO05D007078 8.2e-50 201.4 233 49.4
AUR62025814 Chenopodium quinoa HOM05D005866 ORTHO05D007078 2.4e-49 199.9 240 49.6
Haze_20956 Corylus avellana HOM05D005866 ORTHO05D007078 2.6e-48 196.4 259 48.3
Hund02698 Selenicereus undatus HOM05D005866 ORTHO05D007078 1.7e-47 193.7 243 49.0
Prupe.6G271100 Prunus persica HOM05D000012 ORTHO05D000567 3.8e-47 192.6 262 47.3
FvH4_6g11980 Fragaria vesca HOM05D005866 ORTHO05D007078 6.5e-47 191.8 264 45.5
ClCG04G007220 Citrullus lanatus HOM05D005866 ORTHO05D007078 1.4e-46 190.7 223 53.4
FAN02G1355 Fragaria x ananassa HOM05D005866 ORTHO05D007078 4.2e-46 189.1 264 45.1
FAN14G3397 Fragaria x ananassa HOM05D000012 ORTHO05D000567 4.2e-46 189.1 264 44.7
GSVIVG01034004001 Vitis vinifera HOM05D000012 ORTHO05D000567 5.5e-46 188.7 262 46.2
Medtr4g015010 Medicago truncatula HOM05D005866 ORTHO05D007078 1.6e-45 187.2 252 50.4
Duzib128G1899 Durio zibethinus HOM05D005866 ORTHO05D007078 2.1e-45 186.8 262 47.7
VMungo0331G1214 Vigna mungo HOM05D005866 ORTHO05D007078 2.1e-45 186.8 221 52.5
TWI74G1551 Tripterygium wilfordii HOM05D005866 ORTHO05D007078 3.5e-45 186.0 260 46.2
Gohir.A01G225500 Gossypium hirsutum HOM05D005866 ORTHO05D007078 1.0e-44 184.5 261 47.5
Manes.09G102400 Manihot esculenta HOM05D005866 ORTHO05D007078 1.0e-44 184.5 258 45.3
Cpa.g.sc56.117 Carica papaya HOM05D005866 ORTHO05D007078 2.3e-44 183.3 258 47.3
Sed0005881 Sechium edule HOM05D005866 ORTHO05D007078 2.3e-44 183.3 240 48.8
Sopen10g034540 Solanum pennellii HOM05D005866 ORTHO05D007078 3.9e-44 182.6 258 47.3
PGSC0003DMG400011090 Solanum tuberosum HOM05D005866 ORTHO05D007078 5.1e-44 182.2 258 47.3
PGR031G2542 Punica granatum HOM05D005866 ORTHO05D007078 6.7e-44 181.8 253 47.8
MELO3C003227.2 Cucumis melo HOM05D005866 ORTHO05D007078 8.7e-44 181.4 222 52.7
TPR.G5230 Trifolium pratense HOM05D005866 ORTHO05D007078 8.7e-44 181.4 242 50.4
TAR623G0986 Trochodendron aralioides HOM05D005866 ORTHO05D007078 1.5e-43 180.6 256 46.9
Nn2g11373 Nelumbo nucifera HOM05D005866 ORTHO05D007078 5.7e-43 178.7 237 48.9
Phvul.010G008600 Phaseolus vulgaris HOM05D005866 ORTHO05D007078 5.7e-43 178.7 222 51.4
BcaC09g48006 Brassica carinata HOM05D005866 ORTHO05D007078 7.4e-43 178.3 218 48.6
COL.COLO4_14593 Corchorus olitorius HOM05D005866 ORTHO05D007078 4.8e-42 175.6 257 46.3
CSS0007949 Camellia sinensis var. sinensis HOM05D005866 ORTHO05D007078 1.1e-41 174.5 260 43.5
CSS0025068 Camellia sinensis var. sinensis HOM05D005866 ORTHO05D007078 1.1e-41 174.5 260 43.5
Thhalv10021354m.g Eutrema salsugineum HOM05D005866 ORTHO05D007078 3.1e-41 172.9 261 43.3
ECA247G1841 Erigeron canadensis HOM05D005866 ORTHO05D007078 6.9e-41 171.8 209 48.8
Carub.0003s0821 Capsella rubella HOM05D005866 ORTHO05D007078 9.0e-41 171.4 223 47.5
Sc01g0006840 Simmondsia chinensis HOM05D005866 ORTHO05D007078 9.0e-41 171.4 245 46.1
FAN05G0379 Fragaria x ananassa HOM05D000012 ORTHO05D000567 1.5e-40 170.6 264 42.8
AL3G20110 Arabidopsis lyrata HOM05D005866 ORTHO05D007078 2.0e-40 170.2 223 46.2
BcaC09g48050 Brassica carinata HOM05D005866 ORTHO05D007078 2.6e-40 169.9 253 46.2
CARHR083410 Cardamine hirsuta HOM05D005866 ORTHO05D007078 5.9e-40 168.7 253 43.9
Nitab4.5_0004912g0060 Nicotiana tabacum HOM05D005866 ORTHO05D007078 5.9e-40 168.7 223 48.0
BcaC05g29639 Brassica carinata HOM05D005866 ORTHO05D007078 7.7e-40 168.3 234 46.2
Solyc10g085080.3 Solanum lycopersicum HOM05D005866 ORTHO05D007078 7.7e-40 168.3 272 44.1
Ah.12g060060 Amaranthus hybridus HOM05D005866 ORTHO05D007078 1.0e-39 167.9 248 44.4
CAN.G1297.4 Capsicum annuum HOM05D005866 ORTHO05D007078 1.7e-39 167.2 237 46.0
AT3G09050 Arabidopsis thaliana HOM05D005866 ORTHO05D007078 2.9e-39 166.4 233 44.2
Peaxi162Scf00141g00718 Petunia axillaris HOM05D005866 ORTHO05D007078 2.9e-39 166.4 226 46.9
Lsat_1_v5_gn_9_36061 Lactuca sativa HOM05D005866 ORTHO05D007078 8.5e-39 164.9 236 44.9
Sp3g07500 Schrenkiella parvula HOM05D005866 ORTHO05D007078 1.1e-38 164.5 234 44.4
A05p39790 Brassica napus HOM05D005866 ORTHO05D007078 1.4e-38 164.1 234 45.3
C05p58830 Brassica napus HOM05D005866 ORTHO05D007078 1.4e-38 164.1 233 45.5
BraA05t22763Z Brassica rapa HOM05D005866 ORTHO05D007078 1.4e-38 164.1 234 45.3
BcaC09g48005 Brassica carinata HOM05D005866 ORTHO05D007078 1.9e-38 163.7 218 46.8
vmacro08602 Vaccinium macrocarpon HOM05D005866 ORTHO05D007078 1.9e-38 163.7 237 41.8
BolC1t05477H Brassica oleracea HOM05D005866 ORTHO05D007078 7.2e-38 161.8 253 45.1
BolC5t34535H Brassica oleracea HOM05D005866 ORTHO05D007078 7.2e-38 161.8 233 45.1
Zm00001eb367320 Zea mays HOM05D005866 ORTHO05D007078 1.2e-37 161.0 223 43.0
Eucgr.B02792 Eucalyptus grandis HOM05D005866 ORTHO05D007078 7.9e-37 158.3 268 41.4
Ciclev10012537m.g Citrus clementina HOM05D005866 ORTHO05D007078 8.8e-36 154.8 239 43.5
Sopen09g007090 Solanum pennellii HOM05D005866 ORTHO05D007078 8.8e-36 154.8 236 44.1
Gorai.002G261300 Gossypium raimondii HOM05D005866 ORTHO05D007078 1.5e-35 154.1 261 42.9
Os01g0853000 Oryza sativa ssp. japonica HOM05D005866 ORTHO05D007078 1.5e-35 154.1 228 40.8
THA.LOC104816219 Tarenaya hassleriana HOM05D005866 ORTHO05D007078 2.0e-35 153.7 261 42.1
unitig_578.g15896 Utricularia gibba HOM05D005866 ORTHO05D007078 5.7e-35 152.1 224 41.1
DCAR_015452 Daucus carota HOM05D005866 ORTHO05D007078 1.7e-34 150.6 235 42.6
CAN.G338.58 Capsicum annuum HOM05D005866 ORTHO05D007078 2.8e-34 149.8 261 41.0
Glyma.03G077300 Glycine max HOM05D005866 ORTHO05D007078 2.8e-34 149.8 249 45.8
CANSAT35G0638 Cannabis sativa HOM05D005866 ORTHO05D007078 4.8e-34 149.1 260 40.8
CDE03G0505 Ceratophyllum demersum HOM05D005866 ORTHO05D007078 4.1e-33 146.0 229 43.2
PSO384G0902 Papaver somniferum HOM05D005866 ORTHO05D007078 5.3e-33 145.6 261 40.2
Nitab4.5_0000008g0810 Nicotiana tabacum HOM05D005866 ORTHO05D007078 9.1e-33 144.8 261 41.0
MSTRG.5595 Avicennia marina HOM05D005866 ORTHO05D007078 7.7e-32 141.7 227 40.1
Nitab4.5_0000652g0170 Nicotiana tabacum HOM05D005866 ORTHO05D007078 1.0e-31 141.4 226 44.7
Nitab4.5_0001837g0050 Nicotiana tabacum HOM05D005866 ORTHO05D007078 2.2e-31 140.2 263 39.5
PGSC0003DMG400020319 Solanum tuberosum HOM05D005866 ORTHO05D007078 2.1e-29 133.7 233 39.5
Cc06_g01630 Coffea canephora HOM05D005866 ORTHO05D007078 2.7e-29 133.3 226 40.3
SGA_v2.0_scaffold85G26760 Striga asiatica HOM05D005866 ORTHO05D007078 6.1e-29 132.1 145 51.0
EL10Ac6g13875 Beta vulgaris HOM05D005866 ORTHO05D007078 3.0e-28 129.8 175 42.9
Solyc09g014215.2 Solanum lycopersicum HOM05D005866 ORTHO05D007078 3.0e-28 129.8 267 37.8
AagrBONN_evm.TU.Sc2ySwM_117.2545 Anthoceros agrestis HOM05D005866 ORTHO05D007078 6.7e-28 128.6 234 33.8
Migut.J00221 Erythranthe guttata HOM05D005866 ORTHO05D007078 2.6e-27 126.7 206 42.2
Actinidia05342 Actinidia chinensis HOM05D005866 ORTHO05D007078 1.3e-26 124.4 197 40.6
Peaxi162Scf00009g01923 Petunia axillaris HOM05D005866 ORTHO05D007078 2.8e-26 123.2 236 38.6
Lj2P1203T18 Lonicera japonica HOM05D005866 ORTHO05D007078 3.7e-26 122.9 147 48.3
TAR633G2503 Trochodendron aralioides HOM05D005866 ORTHO05D007078 3.7e-26 122.9 145 49.7
SEGI_33363 Sequoiadendron giganteum HOM05D005866 ORTHO05D007078 8.2e-26 121.7 201 33.3
RcHm_v2.0_Chr3g0463811 Rosa chinensis HOM05D005866 ORTHO05D007078 2.4e-25 120.2 146 47.9
Lalb_Chr03g0043011 Lupinus albus HOM05D005866 ORTHO05D007078 5.3e-25 119.0 80 72.5
Mapoly0004s0086 Marchantia polymorpha HOM05D005866 ORTHO05D007078 9.1e-25 118.2 211 34.1
PSO339G5866 Papaver somniferum HOM05D005866 ORTHO05D007078 3.5e-24 116.3 197 40.1
Pp3c5_19930 Physcomitrium patens HOM05D005866 ORTHO05D007078 5.9e-24 115.5 229 31.4
ATR0618G104 Amborella trichopoda HOM05D005866 ORTHO05D007078 1.2e-21 107.8 141 46.8
SEGI_17473 Sequoiadendron giganteum HOM05D005866 ORTHO05D007078 1.6e-21 107.5 180 33.3
SMO143G0029 Selaginella moellendorffii HOM05D001879 ORTHO05D007648 1.7e-18 97.4 196 31.6
ATR0618G115 Amborella trichopoda HOM05D005866 ORTHO05D007078 3.1e-17 93.2 113 47.8
HanXRQChr10g0287001 Helianthus annuus HOM05D005866 ORTHO05D007078 7.0e-17 92.0 94 47.9
Mapoly0010s0127 Marchantia polymorpha HOM05D005866 ORTHO05D007078 1.6e-16 90.9 234 27.8
Pp3c20_9600 Physcomitrium patens HOM05D005866 ORTHO05D007078 5.5e-14 82.4 234 28.6
SGA_v2.0_scaffold1443G53951 Striga asiatica HOM05D005866 ORTHO05D007078 2.1e-13 80.5 70 57.1
Actinidia01118 Actinidia chinensis HOM05D005866 ORTHO05D007078 8.0e-13 78.6 77 53.2
Pp3c23_6870 Physcomitrium patens HOM05D005866 ORTHO05D007078 1.3e-10 71.2 220 25.0
SEGI_22580 Sequoiadendron giganteum HOM05D005866 ORTHO05D007078 8.3e-10 68.6 257 22.6
Dinv37082 Davidia involucrata HOM05D005866 ORTHO05D007078 5.4e-09 65.9 99 40.4
Nn2g13608 Nelumbo nucifera HOM05D005866 ORTHO05D007078 2.7e-08 63.5 64 53.1
Actinidia01119 Actinidia chinensis HOM05D005866 ORTHO05D007078 5.0e-07 59.3 81 46.9


User provided reference genes

Program Settings