Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_07546_v3 Cicer arietinum L. HOM05D006730 ORTHO05D008189 0.0e+00 1348.2 711 100.0
Ca_03751_v3 Cicer arietinum L. HOM05D006730 ORTHO05D008189 0.0e+00 1171.8 652 94.0
TPR.G34183 Trifolium pratense HOM05D006730 ORTHO05D008189 7.3e-226 787.7 662 68.3
Medtr4g068005 Medicago truncatula HOM05D006730 ORTHO05D008189 8.7e-219 764.2 647 66.5
Psat7g208760 Pisum sativum HOM05D006730 ORTHO05D008189 2.4e-216 756.1 651 67.6
Glyma.12G050000 Glycine max HOM05D006730 ORTHO05D008189 2.2e-185 653.3 659 57.2
VMungo0720G0522 Vigna mungo HOM05D006730 ORTHO05D008189 7.7e-175 618.2 669 55.5
Phvul.011G201600 Phaseolus vulgaris HOM05D006730 ORTHO05D008189 3.8e-174 615.9 668 54.9
VMungo0647G1321 Vigna mungo HOM05D006730 ORTHO05D008189 2.6e-170 603.2 657 55.9
Lj3g0015132 Lotus japonicus HOM05D006730 ORTHO05D008189 2.6e-162 576.6 653 53.3
Lalb_Chr03g0025971 Lupinus albus HOM05D006730 ORTHO05D008189 3.3e-149 533.1 658 51.8
Lalb_Chr03g0026031 Lupinus albus HOM05D006730 ORTHO05D008189 3.3e-149 533.1 658 51.8
arahy.Tifrunner.gnm1.ann1.S6BLSS Arachis hypogaea HOM05D006730 ORTHO05D008189 6.2e-140 502.3 652 48.8
arahy.Tifrunner.gnm1.ann1.PF62HI Arachis hypogaea HOM05D006730 ORTHO05D008189 5.4e-136 489.2 656 48.3
Cfa015217 Carpinus fangiana HOM05D006730 ORTHO05D008189 3.1e-123 446.8 678 42.3
Prupe.8G045700 Prunus persica HOM05D006730 ORTHO05D008189 3.1e-115 420.2 657 42.3
QL10p052118 Quercus lobata HOM05D006730 ORTHO05D008189 5.4e-112 409.5 688 41.4
Haze_01419 Corylus avellana HOM05D006730 ORTHO05D008189 2.4e-104 384.0 632 41.6
Manes.04G048400 Manihot esculenta HOM05D006730 ORTHO05D008189 1.2e-103 381.7 663 40.1
MD04G1046800 Malus domestica HOM05D006730 ORTHO05D008189 1.0e-102 378.6 647 41.6
Sed0020880 Sechium edule HOM05D006730 ORTHO05D008189 2.0e-98 364.4 661 36.9
Ciclev10019155m.g Citrus clementina HOM05D006730 ORTHO05D008189 2.6e-98 364.0 659 39.0
ClCG09G018880 Citrullus lanatus HOM05D006730 ORTHO05D008189 1.6e-95 354.8 692 38.3
Atru.chr4.1340 Acer truncatum HOM05D006730 ORTHO05D008189 6.0e-95 352.8 647 39.7
TAR633G1963 Trochodendron aralioides HOM05D006730 ORTHO05D008189 6.0e-95 352.8 649 38.1
Cpa.g.sc9.329 Carica papaya HOM05D006730 ORTHO05D008189 1.0e-94 352.1 657 38.2
CiPaw.01G173600 Carya illinoinensis HOM05D006730 ORTHO05D008189 1.3e-94 351.7 663 40.3
Duzib151G0982 Durio zibethinus HOM05D006730 ORTHO05D008189 1.8e-94 351.3 649 37.4
TAR633G0487 Trochodendron aralioides HOM05D006730 ORTHO05D008189 2.3e-94 350.9 651 38.2
Potri.017G018300 Populus trichocarpa HOM05D006730 ORTHO05D008189 8.7e-94 349.0 654 37.3
CsaV3_7G002050 Cucumis sativus L. HOM05D006730 ORTHO05D008189 1.1e-93 348.6 652 37.7
Thecc.04G171700 Theobroma cacao HOM05D006730 ORTHO05D008189 1.5e-93 348.2 653 37.2
Nn1g09713 Nelumbo nucifera HOM05D006730 ORTHO05D008189 2.5e-93 347.4 646 37.3
Actinidia27097 Actinidia chinensis HOM05D006730 ORTHO05D008189 5.7e-93 346.3 668 38.5
CANSAT56G2182 Cannabis sativa HOM05D006730 ORTHO05D008189 1.1e-91 342.0 665 37.1
FAN26G1825 Fragaria x ananassa HOM05D006730 ORTHO05D008189 7.6e-90 335.9 642 38.0
Sc19g0000330 Simmondsia chinensis HOM05D006730 ORTHO05D008189 3.8e-89 333.6 679 34.5
FvH4_1g27220 Fragaria vesca HOM05D006730 ORTHO05D008189 5.0e-89 333.2 642 37.9
MELO3C015702.2 Cucumis melo HOM05D006730 ORTHO05D008189 6.5e-89 332.8 646 36.7
FAN19G2476 Fragaria x ananassa HOM05D006730 ORTHO05D008189 6.5e-89 332.8 644 37.9
TWI15G0430 Tripterygium wilfordii HOM05D006730 ORTHO05D008189 6.5e-89 332.8 659 37.8
Sabra06G0076300 Salix brachista HOM05D006730 ORTHO05D008189 3.2e-88 330.5 641 35.4
COL.COLO4_28380 Corchorus olitorius HOM05D006730 ORTHO05D008189 7.9e-87 325.9 646 36.2
Oeu002416.1 Olea europaea HOM05D006730 ORTHO05D008189 2.3e-86 324.3 686 35.7
Sabra17G0012500 Salix brachista HOM05D006730 ORTHO05D008189 3.9e-86 323.6 643 35.0
Eucgr.A00038 Eucalyptus grandis HOM05D006730 ORTHO05D008189 5.1e-86 323.2 660 35.9
PGR102G2296 Punica granatum HOM05D006730 ORTHO05D008189 9.7e-85 318.9 664 35.8
Aa31LG1G25250 Aethionema arabicum HOM05D006730 ORTHO05D008189 5.9e-82 309.7 661 36.0
GSVIVG01038091001 Vitis vinifera HOM05D006730 ORTHO05D008189 1.3e-81 308.5 602 36.0
Gohir.D02G011000 Gossypium hirsutum HOM05D006730 ORTHO05D008189 2.9e-81 307.4 647 35.1
AL7G49300 Arabidopsis lyrata HOM05D006730 ORTHO05D008189 3.8e-81 307.0 675 34.8
Gorai.005G013400 Gossypium raimondii HOM05D006730 ORTHO05D008189 1.9e-80 304.7 647 34.9
RcHm_v2.0_Chr3g0487611 Rosa chinensis HOM05D006730 ORTHO05D008189 2.7e-79 300.8 667 36.6
MSTRG.27276 Avicennia marina HOM05D006730 ORTHO05D008189 2.6e-77 294.3 654 34.4
vmacro00655 Vaccinium macrocarpon HOM05D006730 ORTHO05D008189 4.4e-77 293.5 643 34.7
vmacro21172 Vaccinium macrocarpon HOM05D006730 ORTHO05D008189 9.7e-77 292.4 704 33.4
Carub.0007s3500 Capsella rubella HOM05D006730 ORTHO05D008189 4.8e-76 290.0 696 33.2
Lj3A110T20 Lonicera japonica HOM05D006730 ORTHO05D008189 1.8e-75 288.1 616 36.2
AT5G40520 Arabidopsis thaliana HOM05D006730 ORTHO05D008189 2.0e-74 284.6 673 35.7
Hma1.2p1_0324F.1_g125720 Hydrangea macrophylla HOM05D006730 ORTHO05D008189 1.3e-73 282.0 557 38.8
THA.LOC104805724 Tarenaya hassleriana HOM05D006730 ORTHO05D008189 1.7e-73 281.6 686 33.8
Hma1.2p1_3037F.1_g331960 Hydrangea macrophylla HOM05D006730 ORTHO05D008189 3.2e-72 277.3 557 38.4
BraA05t20528Z Brassica rapa HOM05D006730 ORTHO05D008189 4.7e-71 273.5 660 32.4
A05p16170 Brassica napus HOM05D006730 ORTHO05D008189 1.0e-70 272.3 660 32.3
BcaC08g44345 Brassica carinata HOM05D006730 ORTHO05D008189 1.8e-70 271.6 668 33.1
AUR62028127 Chenopodium quinoa HOM05D006730 ORTHO05D008189 3.9e-70 270.4 618 33.0
BolC6t36977H Brassica oleracea HOM05D006730 ORTHO05D008189 5.2e-70 270.0 671 32.6
CARHR138600 Cardamine hirsuta HOM05D006730 ORTHO05D008189 2.0e-69 268.1 595 33.9
AUR62005936 Chenopodium quinoa HOM05D006730 ORTHO05D008189 4.4e-69 266.9 624 32.7
TAR633G2319 Trochodendron aralioides HOM05D006730 ORTHO05D008189 4.4e-69 266.9 497 37.0
Sp7g05120 Schrenkiella parvula HOM05D006730 ORTHO05D008189 5.7e-69 266.5 633 33.3
Peaxi162Scf00180g00519 Petunia axillaris HOM05D006730 ORTHO05D008189 7.4e-69 266.2 638 32.8
C06p17830 Brassica napus HOM05D006730 ORTHO05D008189 9.7e-69 265.8 634 33.1
Dinv05091 Davidia involucrata HOM05D006730 ORTHO05D008189 2.2e-68 264.6 571 36.8
Nitab4.5_0001210g0010 Nicotiana tabacum HOM05D006730 ORTHO05D008189 2.2e-68 264.6 697 30.7
Nitab4.5_0001586g0210 Nicotiana tabacum HOM05D006730 ORTHO05D008189 3.7e-68 263.8 656 32.3
Lsat_1_v5_gn_5_69460 Lactuca sativa HOM05D006730 ORTHO05D008189 1.4e-67 261.9 600 33.2
MBI11_g10487_MAGBIO Magnolia biondii HOM05D006730 ORTHO05D008189 1.4e-67 261.9 619 33.9
Oeu029987.1 Olea europaea HOM05D006730 ORTHO05D008189 2.4e-67 261.2 700 30.1
BcaB02g08030 Brassica carinata HOM05D006730 ORTHO05D008189 7.0e-67 259.6 666 32.7
Sopen06g029510 Solanum pennellii HOM05D006730 ORTHO05D008189 9.1e-67 259.2 689 31.6
Solyc06g073160.4 Solanum lycopersicum HOM05D006730 ORTHO05D008189 5.9e-66 256.5 689 31.2
Gohir.A02G010500 Gossypium hirsutum HOM05D006730 ORTHO05D008189 1.3e-65 255.4 390 42.1
SGA_v2.0_scaffold60G20910 Striga asiatica HOM05D005928 ORTHO05D007500 3.6e-63 247.3 618 32.5
Thhalv10027675m.g Eutrema salsugineum HOM05D006730 ORTHO05D008189 8.0e-63 246.1 662 32.8
PGSC0003DMG400026917 Solanum tuberosum HOM05D006730 ORTHO05D008189 1.4e-62 245.4 677 31.0
Hund25530 Selenicereus undatus HOM05D006730 ORTHO05D008189 1.2e-61 242.3 405 39.3
ECA233G5772 Erigeron canadensis HOM05D005219 ORTHO05D006451 1.5e-61 241.9 573 34.4
SGA_v2.0_scaffold94G28623 Striga asiatica HOM05D006730 ORTHO05D008189 5.7e-61 240.0 627 31.1
Nitab4.5_0002782g0010 Nicotiana tabacum HOM05D006730 ORTHO05D008189 1.7e-60 238.4 643 31.3
Cc03_g12540 Coffea canephora HOM05D006730 ORTHO05D008189 3.8e-57 227.3 663 31.7
EL10Ac9g22987 Beta vulgaris HOM05D006730 ORTHO05D008189 2.7e-55 221.1 651 29.6
CSS0011413 Camellia sinensis var. sinensis HOM05D006730 ORTHO05D008189 3.5e-50 204.1 296 44.3
HanXRQChr17g0565921 Helianthus annuus HOM05D006730 ORTHO05D008189 2.9e-49 201.1 426 36.2
ATR0743G243 Amborella trichopoda HOM05D006730 ORTHO05D008189 4.2e-48 197.2 664 25.9
SHI01154 Sapria himalayana HOM05D006730 ORTHO05D008189 1.0e-46 192.6 575 29.6
CDE07G0581 Ceratophyllum demersum HOM05D006730 ORTHO05D008189 3.4e-45 187.6 664 27.4
SGA_v2.0_scaffold36G14479 Striga asiatica HOM05D000061 ORTHO05D008189 1.8e-43 181.8 638 28.5
FAN23G1889 Fragaria x ananassa HOM05D006730 ORTHO05D008189 1.4e-38 165.6 529 31.6
FAN28G2072 Fragaria x ananassa HOM05D006730 ORTHO05D008189 4.0e-38 164.1 320 36.6
CSS0007333 Camellia sinensis var. sinensis HOM05D006730 ORTHO05D008189 3.7e-36 157.5 281 37.4
FAN28G2984 Fragaria x ananassa HOM05D006730 ORTHO05D008189 5.2e-30 137.1 326 35.6
DCAR_027052 Daucus carota HOM05D006730 ORTHO05D008189 2.0e-29 135.2 310 33.5
unitig_26.g9736 Utricularia gibba HOM05D006730 ORTHO05D006349 3.4e-29 134.4 408 29.9
Ah.10g027080 Amaranthus hybridus HOM05D006730 ORTHO05D008189 5.4e-27 127.1 371 28.6
PSO017G5839 Papaver somniferum HOM05D006730 ORTHO05D008189 5.6e-24 117.1 414 27.3
Zm00001eb184290 Zea mays HOM05D006730 ORTHO05D008189 2.8e-23 114.8 460 26.5
Os09g0103200 Oryza sativa ssp. japonica HOM05D006730 ORTHO05D008189 1.3e-17 95.9 375 25.6
PSO063G4508 Papaver somniferum HOM05D006730 ORTHO05D008189 7.6e-13 80.1 333 24.9
HPP92_022486 Vanilla planifolia HOM05D001064 ORTHO05D000885 4.9e-12 77.4 407 25.1
Actinidia26680 Actinidia chinensis HOM05D006730 ORTHO05D008189 1.0e-09 69.7 138 37.0
HanXRQChr12g0385981 Helianthus annuus HOM05D006730 ORTHO05D008189 5.1e-09 67.4 91 44.0
Ah.10g027090 Amaranthus hybridus HOM05D006730 ORTHO05D008189 8.6e-09 66.6 243 29.2
Gohir.A02G010550 Gossypium hirsutum HOM05D006730 ORTHO05D008189 4.0e-06 57.8 87 33.3


User provided reference genes

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