Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_07533_v3 Cicer arietinum L. HOM05D005470 ORTHO05D006855 3.9e-179 631.3 314 100.0
TPR.G15281 Trifolium pratense HOM05D005470 ORTHO05D006855 1.1e-152 543.5 314 87.9
Psat3g144240 Pisum sativum HOM05D005470 ORTHO05D006855 2.4e-152 542.3 314 86.6
Medtr7g058920 Medicago truncatula HOM05D005470 ORTHO05D006855 2.5e-149 532.3 318 84.0
arahy.Tifrunner.gnm1.ann1.07T9WF Arachis hypogaea HOM05D005470 ORTHO05D006855 9.0e-144 513.8 312 78.5
Lalb_Chr19g0125551 Lupinus albus HOM05D005470 ORTHO05D006855 1.7e-142 509.6 314 81.2
Lj1g0018515 Lotus japonicus HOM05D005470 ORTHO05D006855 1.9e-141 506.1 310 79.7
arahy.Tifrunner.gnm1.ann1.KE0QUS Arachis hypogaea HOM05D005470 ORTHO05D006855 2.5e-141 505.8 313 78.3
arahy.Tifrunner.gnm1.ann1.4GE7F8 Arachis hypogaea HOM05D005470 ORTHO05D006855 5.1e-139 498.0 314 77.4
Haze_24781 Corylus avellana HOM05D005470 ORTHO05D006855 3.4e-135 485.3 328 73.8
QL03p049466 Quercus lobata HOM05D005470 ORTHO05D006855 3.4e-135 485.3 310 76.5
Glyma.18G172500 Glycine max HOM05D005470 ORTHO05D006855 1.0e-134 483.8 313 78.0
Manes.12G042650 Manihot esculenta HOM05D005470 ORTHO05D006855 1.0e-134 483.8 322 74.5
Phvul.007G209400 Phaseolus vulgaris HOM05D005470 ORTHO05D006855 1.4e-133 479.9 308 76.0
VMungo0516G0001 Vigna mungo HOM05D005470 ORTHO05D006855 1.4e-133 479.9 310 76.1
RcHm_v2.0_Chr6g0285101 Rosa chinensis HOM05D005470 ORTHO05D006855 9.4e-133 477.2 314 75.5
MD10G1166100 Malus domestica HOM05D005470 ORTHO05D006855 4.7e-132 474.9 318 73.9
vmacro02749 Vaccinium macrocarpon HOM05D005470 ORTHO05D006855 6.1e-132 474.6 328 73.2
CiPaw.04G106400 Carya illinoinensis HOM05D005470 ORTHO05D006855 1.0e-131 473.8 317 73.8
Eucgr.H00804 Eucalyptus grandis HOM05D005470 ORTHO05D006855 1.8e-131 473.0 313 72.8
Sopen09g024670 Solanum pennellii HOM05D005470 ORTHO05D006855 6.7e-131 471.1 316 74.4
Solyc09g061680.3 Solanum lycopersicum HOM05D005470 ORTHO05D006855 1.1e-130 470.3 316 74.4
FvH4_2g19300 Fragaria vesca HOM05D005470 ORTHO05D006855 1.5e-130 469.9 314 74.2
PGSC0003DMG400002375 Solanum tuberosum HOM05D005470 ORTHO05D006855 1.5e-130 469.9 313 74.4
FAN24G1307 Fragaria x ananassa HOM05D005470 ORTHO05D006855 2.0e-130 469.5 314 73.9
Duzib211G0062 Durio zibethinus HOM05D005470 ORTHO05D006855 9.7e-130 467.2 315 73.0
Potri.002G240800 Populus trichocarpa HOM05D005470 ORTHO05D006855 9.7e-130 467.2 319 72.7
Gohir.D07G162300 Gossypium hirsutum HOM05D005470 ORTHO05D006855 1.7e-129 466.5 323 72.1
Gorai.001G185900 Gossypium raimondii HOM05D005470 ORTHO05D006855 1.7e-129 466.5 323 72.1
Rhsim13G0044300 Rhododendron simsii HOM05D006020 ORTHO05D006855 2.2e-129 466.1 305 75.7
Cc01_g17220 Coffea canephora HOM05D005470 ORTHO05D006855 3.7e-129 465.3 316 72.8
Sabra02G0183400 Salix brachista HOM05D005470 ORTHO05D006855 3.7e-129 465.3 319 72.1
Lj2A1133T34 Lonicera japonica HOM05D005470 ORTHO05D006855 6.3e-129 464.5 321 72.9
Nitab4.5_0000866g0040 Nicotiana tabacum HOM05D005470 ORTHO05D006855 8.2e-129 464.2 320 73.4
CANSAT56G1556 Cannabis sativa HOM05D005470 ORTHO05D006855 1.1e-128 463.8 321 72.0
Nitab4.5_0000866g0080 Nicotiana tabacum HOM05D005470 ORTHO05D006855 1.1e-128 463.8 320 73.8
TAR365G1033 Trochodendron aralioides HOM05D005470 ORTHO05D006855 1.1e-128 463.8 317 74.1
CSS0013378 Camellia sinensis var. sinensis HOM05D005470 ORTHO05D006855 1.8e-128 463.0 316 72.8
Gohir.A07G156000 Gossypium hirsutum HOM05D005470 ORTHO05D006855 1.8e-128 463.0 323 71.8
Thecc.01G227800 Theobroma cacao HOM05D005470 ORTHO05D006855 1.8e-128 463.0 319 71.8
MSTRG.21429 Avicennia marina HOM05D005470 ORTHO05D006855 7.0e-128 461.1 316 72.2
DCAR_018553 Daucus carota HOM05D005470 ORTHO05D006855 1.2e-127 460.3 297 76.1
Dinv04663 Davidia involucrata HOM05D005470 ORTHO05D006855 1.5e-127 459.9 302 74.8
Nitab4.5_0003790g0040 Nicotiana tabacum HOM05D005470 ORTHO05D006855 1.5e-127 459.9 320 73.1
Cpa.g.sc8.172 Carica papaya HOM05D005470 ORTHO05D006855 3.5e-127 458.8 314 72.0
EL10Ac7g17787 Beta vulgaris HOM05D005470 ORTHO05D006855 1.0e-126 457.2 306 72.2
Hma1.2p1_1061F.1_g253380 Hydrangea macrophylla HOM05D005470 ORTHO05D006855 1.0e-126 457.2 320 71.2
AUR62031834 Chenopodium quinoa HOM05D005470 ORTHO05D006855 3.8e-126 455.3 311 71.7
Actinidia37584 Actinidia chinensis HOM05D005470 ORTHO05D006855 5.0e-126 454.9 311 72.7
Atru.chr5.1498 Acer truncatum HOM05D005470 ORTHO05D006855 1.9e-125 453.0 308 71.4
CsaV3_3G028840 Cucumis sativus L. HOM05D005470 ORTHO05D006855 1.9e-125 453.0 315 72.1
ClCG07G001860 Citrullus lanatus HOM05D005470 ORTHO05D006855 3.2e-125 452.2 322 70.2
Sed0016487 Sechium edule HOM05D005470 ORTHO05D006855 3.2e-125 452.2 314 71.3
Nn3g19926 Nelumbo nucifera HOM05D005470 ORTHO05D006855 7.2e-125 451.1 326 68.7
Sc17g0002580 Simmondsia chinensis HOM05D005470 ORTHO05D006855 1.6e-124 449.9 310 73.2
PGR083G1301 Punica granatum HOM05D005470 ORTHO05D006855 8.0e-124 447.6 312 71.2
CAN.G1273.33 Capsicum annuum HOM05D005470 ORTHO05D006855 1.0e-123 447.2 315 70.5
Hund18358 Selenicereus undatus HOM05D005470 ORTHO05D006855 1.8e-123 446.4 318 69.8
Aqoxy2G03764 Aquilegia oxysepala HOM05D005470 ORTHO05D006855 3.0e-123 445.7 314 72.3
PSO478G2025 Papaver somniferum HOM05D005470 ORTHO05D006855 3.0e-123 445.7 315 73.3
THA.LOC104802678 Tarenaya hassleriana HOM05D005470 ORTHO05D006855 8.8e-123 444.1 306 70.9
Oeu015466.1 Olea europaea HOM05D005470 ORTHO05D006855 1.1e-122 443.7 314 71.7
MELO3C026704.2 Cucumis melo HOM05D005470 ORTHO05D006855 7.5e-122 441.0 315 70.5
SGA_v2.0_scaffold8G04652 Striga asiatica HOM05D005470 ORTHO05D006855 7.5e-122 441.0 309 72.2
Migut.I00044 Erythranthe guttata HOM05D005470 ORTHO05D006855 9.7e-122 440.7 318 70.4
GSVIVG01028578001 Vitis vinifera HOM05D005470 ORTHO05D006855 9.7e-122 440.7 304 72.4
PSO017G3643 Papaver somniferum HOM05D005470 ORTHO05D006855 1.3e-121 440.3 307 73.6
TWI75G1873 Tripterygium wilfordii HOM05D005470 ORTHO05D006855 1.7e-121 439.9 308 71.1
HanXRQChr04g0110691 Helianthus annuus HOM05D005470 ORTHO05D006855 2.8e-121 439.1 312 72.4
CsaV3_6G036910 Cucumis sativus L. HOM05D005470 ORTHO05D006855 3.7e-121 438.7 314 69.1
Migut.D00523 Erythranthe guttata HOM05D005470 ORTHO05D006855 3.1e-120 435.6 317 71.0
Lsat_1_v5_gn_8_90101 Lactuca sativa HOM05D005470 ORTHO05D006855 5.9e-119 431.4 320 69.4
Ah.08g214020 Amaranthus hybridus HOM05D005470 ORTHO05D006855 8.5e-118 427.6 337 64.4
CDE01G0096 Ceratophyllum demersum HOM05D005470 ORTHO05D006855 1.9e-117 426.4 338 65.4
Aa31sc866G40 Aethionema arabicum HOM05D005470 ORTHO05D006855 4.2e-117 425.2 311 68.2
AT5G48840 Arabidopsis thaliana HOM05D005470 ORTHO05D006855 2.1e-116 422.9 311 65.9
Sp2g19240 Schrenkiella parvula HOM05D005470 ORTHO05D006855 2.1e-116 422.9 310 67.4
Ciclev10021316m.g Citrus clementina HOM05D005470 ORTHO05D006855 1.4e-115 420.2 306 69.3
AL8G22020 Arabidopsis lyrata HOM05D005470 ORTHO05D006855 1.8e-115 419.9 311 65.6
Cfa002558 Carpinus fangiana HOM05D005470 ORTHO05D006855 1.8e-115 419.9 327 66.4
BraA06t26801Z Brassica rapa HOM05D005470 ORTHO05D006855 3.0e-115 419.1 315 66.3
BcaC06g30753 Brassica carinata HOM05D005470 ORTHO05D006855 1.2e-114 417.2 315 66.0
BolC7t44465H Brassica oleracea HOM05D005470 ORTHO05D006855 1.2e-114 417.2 314 65.9
Prupe.8G204600 Prunus persica HOM05D005470 ORTHO05D006855 1.2e-114 417.2 283 72.8
Carub.0008s0857 Capsella rubella HOM05D005470 ORTHO05D006855 1.5e-114 416.8 308 65.3
Thhalv10004618m.g Eutrema salsugineum HOM05D005470 ORTHO05D006855 7.5e-114 414.5 310 66.1
C07p39460 Brassica napus HOM05D005470 ORTHO05D006855 9.8e-114 414.1 315 65.4
Peaxi162Scf00107g01116 Petunia axillaris HOM05D005470 ORTHO05D006855 2.8e-113 412.5 314 65.6
CARHR182880 Cardamine hirsuta HOM05D005470 ORTHO05D006855 1.6e-111 406.8 308 64.3
ATR0736G181 Amborella trichopoda HOM05D005470 ORTHO05D006855 4.2e-109 398.7 326 62.3
Os03g0851800 Oryza sativa ssp. japonica HOM05D005470 ORTHO05D006855 6.1e-108 394.8 317 64.0
HPP92_021568 Vanilla planifolia HOM05D005470 ORTHO05D006855 3.7e-105 385.6 310 64.2
MBI07_g00286_MAGBIO Magnolia biondii HOM05D004483 ORTHO05D005609 1.7e-102 376.7 380 56.1
BcaC06g30729 Brassica carinata HOM05D005470 ORTHO05D006855 1.4e-99 367.1 272 67.3
A06p38870 Brassica napus HOM05D006020 ORTHO05D007665 1.8e-99 366.7 279 65.6
SHI28627 Sapria himalayana HOM05D005470 ORTHO05D006855 1.2e-98 364.0 303 62.0
Zm00001eb064670 Zea mays HOM05D005470 ORTHO05D006855 3.4e-98 362.5 316 59.5
SEGI_32261 Sequoiadendron giganteum HOM05D005470 ORTHO05D006855 1.4e-96 357.1 307 59.0
Mapoly0006s0023 Marchantia polymorpha HOM05D005470 ORTHO05D006855 1.6e-95 353.6 305 59.3
Hma1.2p1_1061F.1_g253390 Hydrangea macrophylla HOM05D005470 ORTHO05D006855 3.5e-95 352.4 231 74.0
Pp3c24_12730 Physcomitrium patens HOM05D005470 ORTHO05D006855 3.5e-95 352.4 303 57.8
SMO144G0038 Selaginella moellendorffii HOM05D005470 ORTHO05D006855 3.6e-92 342.4 303 55.8
AUR62008875 Chenopodium quinoa HOM05D005470 ORTHO05D006855 1.8e-91 340.1 277 63.2
TAR365G0091 Trochodendron aralioides HOM05D005470 ORTHO05D006855 6.8e-91 338.2 231 73.2
SMO351G0371 Selaginella moellendorffii HOM05D005470 ORTHO05D006855 8.9e-91 337.8 304 55.9
ECA236G4489 Erigeron canadensis HOM05D005470 ORTHO05D006855 2.1e-84 316.6 231 70.1
CBR_g41676 Chara braunii HOM05D005470 ORTHO05D006855 5.6e-77 292.0 355 46.2
SEGI_26814 Sequoiadendron giganteum HOM05D005470 ORTHO05D006855 6.2e-76 288.5 231 61.9
MCO10G244 Micromonas commoda HOM05D005470 ORTHO05D006855 1.9e-72 276.9 337 46.0
CANSAT01G1736 Cannabis sativa HOM05D005470 ORTHO05D006855 1.2e-71 274.2 187 72.7
Nn1g07785 Nelumbo nucifera HOM05D005470 ORTHO05D006855 8.1e-68 261.5 195 65.1
vmacro15783 Vaccinium macrocarpon HOM05D005470 ORTHO05D006855 1.5e-66 257.3 206 65.5
Atru.chr5.2014 Acer truncatum HOM05D005470 ORTHO05D006855 2.4e-64 250.0 186 64.5
Cre02.g090150 Chlamydomonas reinhardtii HOM05D005470 ORTHO05D006855 4.8e-52 209.1 206 53.9
HanXRQChr16g0514371 Helianthus annuus HOM05D005470 ORTHO05D006855 5.3e-51 205.7 154 66.9
vmacro15781 Vaccinium macrocarpon HOM05D005470 ORTHO05D006855 4.5e-50 202.6 232 53.4
vmacro23327 Vaccinium macrocarpon HOM05D005470 ORTHO05D006855 1.6e-44 184.1 188 56.4
Haze_26957 Corylus avellana HOM05D005470 ORTHO05D006855 8.1e-44 181.8 287 40.8
TAR636G1319 Trochodendron aralioides HOM05D005470 ORTHO05D006855 6.9e-43 178.7 159 59.1
Glyma.08G355700 Glycine max HOM05D005470 ORTHO05D006855 2.6e-42 176.8 305 41.0
unitig_92.g28106 Utricularia gibba HOM05D005470 ORTHO05D006855 4.9e-41 172.6 113 69.9
arahy.Tifrunner.gnm1.ann1.K5YBAW Arachis hypogaea HOM05D005470 ORTHO05D006855 3.9e-38 162.9 121 73.6
Cfa025604 Carpinus fangiana HOM05D005470 ORTHO05D006855 4.8e-36 156.0 251 41.0
unitig_92.g28105 Utricularia gibba HOM05D005470 ORTHO05D006855 1.6e-31 141.0 124 59.7
arahy.Tifrunner.gnm1.ann1.M1HUIQ Arachis hypogaea HOM05D005470 ORTHO05D006855 1.9e-29 134.0 121 64.5
arahy.Tifrunner.gnm1.ann1.GL96XS Arachis hypogaea HOM05D005470 ORTHO05D006855 1.2e-23 114.8 84 71.4
MD05G1177900 Malus domestica HOM05D005470 ORTHO05D006855 6.1e-23 112.5 164 44.5
Nn1g07786 Nelumbo nucifera HOM05D005470 ORTHO05D006855 4.3e-21 106.3 83 65.1
arahy.Tifrunner.gnm1.ann1.HRPB72 Arachis hypogaea HOM05D005470 ORTHO05D006855 9.7e-21 105.1 83 67.5
COL.COLO4_06654 Corchorus olitorius HOM05D005470 ORTHO05D006855 9.7e-21 105.1 69 72.5
CANSAT54G2179 Cannabis sativa HOM05D005470 ORTHO05D006855 4.8e-20 102.8 116 49.1
SEGI_11949 Sequoiadendron giganteum HOM05D005470 ORTHO05D006855 6.3e-20 102.4 148 39.9
CAN.G122.7 Capsicum annuum HOM05D005470 ORTHO05D006855 8.2e-20 102.1 111 48.6
FAN15G3610 Fragaria x ananassa HOM05D005470 ORTHO05D006855 1.2e-18 98.2 73 65.8
CSS0038259 Camellia sinensis var. sinensis HOM05D005470 ORTHO05D006855 3.4e-18 96.7 74 64.9
CsaV3_1G001100 Cucumis sativus L. HOM05D005470 ORTHO05D006855 1.0e-17 95.1 62 75.8
MD05G1178000 Malus domestica HOM05D005470 ORTHO05D006855 3.8e-17 93.2 65 69.2
Atru.chr5.2015 Acer truncatum HOM05D005470 ORTHO05D006855 7.2e-16 89.0 70 68.6
MELO3C014350.2 Cucumis melo HOM05D005470 ORTHO05D006855 7.9e-15 85.5 60 70.0
arahy.Tifrunner.gnm1.ann1.6Q4MDY Arachis hypogaea HOM05D005470 ORTHO05D038880 1.9e-08 64.3 45 68.9


User provided reference genes

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