Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_07248_v3 Cicer arietinum L. HOM05D006514 ORTHO05D008138 3.7e-23 110.5 51 100.0
Phvul.002G183600 Phaseolus vulgaris HOM05D006514 ORTHO05D008138 5.6e-19 96.7 48 87.5
Glyma.05G140300 Glycine max HOM05D006514 ORTHO05D008138 1.2e-18 95.5 48 83.3
Glyma.08G095700 Glycine max HOM05D006514 ORTHO05D008138 1.6e-18 95.1 48 81.2
Lj4g0001345 Lotus japonicus HOM05D006514 ORTHO05D008138 3.6e-18 94.0 48 85.4
arahy.Tifrunner.gnm1.ann1.40255N Arachis hypogaea HOM05D006514 ORTHO05D008138 3.1e-17 90.9 49 79.6
arahy.Tifrunner.gnm1.ann1.4217G9 Arachis hypogaea HOM05D006514 ORTHO05D008138 3.1e-17 90.9 49 79.6
arahy.Tifrunner.gnm1.ann1.0361F1 Arachis hypogaea HOM05D006514 ORTHO05D008138 4.0e-17 90.5 49 77.6
arahy.Tifrunner.gnm1.ann1.TUTF01 Arachis hypogaea HOM05D006514 ORTHO05D008138 4.0e-17 90.5 49 77.6
Lalb_Chr13g0293771 Lupinus albus HOM05D006514 ORTHO05D008138 4.4e-16 87.0 51 70.6
Gohir.D02G094200 Gossypium hirsutum HOM05D006514 ORTHO05D008138 1.9e-14 81.6 55 70.9
Gorai.005G107100 Gossypium raimondii HOM05D006514 ORTHO05D008138 1.9e-14 81.6 55 70.9
Gohir.A03G078101 Gossypium hirsutum HOM05D006514 ORTHO05D008138 4.2e-14 80.5 55 70.9
PGR004G0716 Punica granatum HOM05D006514 ORTHO05D008138 5.4e-14 80.1 50 74.0
Gohir.D01G105000 Gossypium hirsutum HOM05D006514 ORTHO05D008138 7.1e-14 79.7 52 75.0
Gorai.002G129000 Gossypium raimondii HOM05D006514 ORTHO05D008138 7.1e-14 79.7 52 75.0
Rhsim08G0113100 Rhododendron simsii HOM05D006514 ORTHO05D008138 9.2e-14 79.3 41 82.9
Potri.001G000400 Populus trichocarpa HOM05D006514 ORTHO05D008138 1.2e-13 79.0 52 73.1
Potri.002G263300 Populus trichocarpa HOM05D006514 ORTHO05D008138 1.2e-13 79.0 52 73.1
Gohir.A01G116600 Gossypium hirsutum HOM05D006514 ORTHO05D008138 1.6e-13 78.6 52 73.1
Lalb_Chr11g0074141 Lupinus albus HOM05D006514 ORTHO05D008138 1.6e-13 78.6 49 75.5
Ciclev10023245m.g Citrus clementina HOM05D006514 ORTHO05D008138 2.1e-13 78.2 52 69.2
Duzib093G1568 Durio zibethinus HOM05D000207 ORTHO05D001482 2.7e-13 77.8 53 67.9
Manes.05G162000 Manihot esculenta HOM05D006514 ORTHO05D008138 3.5e-13 77.4 52 69.2
FAN16G2060 Fragaria x ananassa HOM05D006514 ORTHO05D008138 4.6e-13 77.0 52 71.2
Hma1.2p1_0023F.1_g014910 Hydrangea macrophylla HOM05D006514 ORTHO05D008138 4.6e-13 77.0 54 70.4
TWI12G0206 Tripterygium wilfordii HOM05D006514 ORTHO05D008138 4.6e-13 77.0 52 69.2
SHI24607 Sapria himalayana HOM05D006514 ORTHO05D008138 6.0e-13 76.6 52 65.4
Dinv36061 Davidia involucrata HOM05D006514 ORTHO05D008138 7.8e-13 76.3 53 71.7
TWI36G0631 Tripterygium wilfordii HOM05D006514 ORTHO05D008138 7.8e-13 76.3 52 69.2
vmacro17857 Vaccinium macrocarpon HOM05D006514 ORTHO05D008138 7.8e-13 76.3 54 68.5
QL12p026537 Quercus lobata HOM05D006514 ORTHO05D008138 1.0e-12 75.9 52 71.2
QL12p026562 Quercus lobata HOM05D006514 ORTHO05D008138 1.0e-12 75.9 52 71.2
Thecc.08G024100 Theobroma cacao HOM05D006514 ORTHO05D008138 1.0e-12 75.9 52 71.2
A10p05150 Brassica napus HOM05D006514 ORTHO05D008138 1.3e-12 75.5 48 75.0
BraA10t42782Z Brassica rapa HOM05D006514 ORTHO05D008138 1.3e-12 75.5 48 75.0
Lalb_Chr08g0232711 Lupinus albus HOM05D006514 ORTHO05D008138 1.3e-12 75.5 51 68.6
MSTRG.24295 Avicennia marina HOM05D006514 ORTHO05D008138 1.7e-12 75.1 52 67.3
Cc07_g09230 Coffea canephora HOM05D006514 ORTHO05D008138 1.7e-12 75.1 47 74.5
AL1G16530 Arabidopsis lyrata HOM05D006514 ORTHO05D008138 2.3e-12 74.7 47 74.5
Carub.0001s0587 Capsella rubella HOM05D006514 ORTHO05D008138 2.3e-12 74.7 47 74.5
CARHR006120 Cardamine hirsuta HOM05D006514 ORTHO05D008138 2.3e-12 74.7 47 76.6
Duzib041G0253 Durio zibethinus HOM05D006514 ORTHO05D008138 2.3e-12 74.7 52 73.1
Prupe.6G054600 Prunus persica HOM05D006514 ORTHO05D008138 2.3e-12 74.7 52 69.2
PGSC0003DMG400015499 Solanum tuberosum HOM05D006514 ORTHO05D008138 2.3e-12 74.7 39 82.1
A04p23650 Brassica napus HOM05D006514 ORTHO05D008138 3.0e-12 74.3 48 68.8
C04p60100 Brassica napus HOM05D006514 ORTHO05D008138 3.0e-12 74.3 48 68.8
DCAR_025932 Daucus carota HOM05D006514 ORTHO05D008138 3.0e-12 74.3 47 72.3
Duzib116G0168 Durio zibethinus HOM05D006514 ORTHO05D008138 3.0e-12 74.3 52 69.2
Thhalv10009956m.g Eutrema salsugineum HOM05D006514 ORTHO05D008138 3.0e-12 74.3 47 76.6
Hma1.2p1_0203F.1_g086530 Hydrangea macrophylla HOM05D006514 ORTHO05D008138 3.0e-12 74.3 52 71.2
AT1G06515 Arabidopsis thaliana HOM05D006514 ORTHO05D008138 3.9e-12 73.9 47 74.5
CSS0043768 Camellia sinensis var. sinensis HOM05D006514 ORTHO05D008138 3.9e-12 73.9 41 80.5
FvH4_3g38980 Fragaria vesca HOM05D006514 ORTHO05D008138 3.9e-12 73.9 52 69.2
FAN21G1628 Fragaria x ananassa HOM05D006514 ORTHO05D008138 3.9e-12 73.9 52 69.2
RcHm_v2.0_Chr5g0070251 Rosa chinensis HOM05D006514 ORTHO05D008138 3.9e-12 73.9 52 69.2
RcHm_v2.0_Chr7g0176991 Rosa chinensis HOM05D006514 ORTHO05D008138 3.9e-12 73.9 52 69.2
Potri.002G263100 Populus trichocarpa HOM05D006514 ORTHO05D008138 5.1e-12 73.6 52 69.2
CiPaw.13G075100 Carya illinoinensis HOM05D006514 ORTHO05D008138 6.6e-12 73.2 55 65.5
SalBow8G0801 Salvia bowleyana HOM05D006514 ORTHO05D008138 6.6e-12 73.2 46 71.7
BcaB02g06800 Brassica carinata HOM05D006514 ORTHO05D008138 8.7e-12 72.8 47 74.5
BcaC07g42061 Brassica carinata HOM05D006514 ORTHO05D008138 8.7e-12 72.8 47 74.5
A09p66940 Brassica napus HOM05D006514 ORTHO05D008138 8.7e-12 72.8 47 74.5
C05p04760 Brassica napus HOM05D006514 ORTHO05D008138 8.7e-12 72.8 47 74.5
C08p51170 Brassica napus HOM05D006514 ORTHO05D008138 8.7e-12 72.8 47 74.5
BolC5t29247H Brassica oleracea HOM05D006514 ORTHO05D008138 8.7e-12 72.8 47 74.5
BolC8t52644H Brassica oleracea HOM05D006514 ORTHO05D008138 8.7e-12 72.8 47 74.5
BraA09t42029Z Brassica rapa HOM05D006514 ORTHO05D008138 8.7e-12 72.8 47 74.5
CiPaw.07G206900 Carya illinoinensis HOM05D006514 ORTHO05D008138 8.7e-12 72.8 52 65.4
Oeu025460.1 Olea europaea HOM05D006514 ORTHO05D008138 8.7e-12 72.8 52 65.4
Cc10_g03090 Coffea canephora HOM05D006514 ORTHO05D008138 1.1e-11 72.4 49 65.3
Migut.N00499 Erythranthe guttata HOM05D006514 ORTHO05D008138 1.1e-11 72.4 52 69.2
AL4G25910 Arabidopsis lyrata HOM05D006514 ORTHO05D008138 1.5e-11 72.0 47 70.2
CANSAT01G0756 Cannabis sativa HOM05D006514 ORTHO05D008138 1.5e-11 72.0 40 72.5
Carub.0004s1216 Capsella rubella HOM05D006514 ORTHO05D008138 1.5e-11 72.0 47 70.2
Eucgr.F04183 Eucalyptus grandis HOM05D006514 ORTHO05D008138 1.5e-11 72.0 52 67.3
THA.LOC104800827 Tarenaya hassleriana HOM05D006514 ORTHO05D008138 1.5e-11 72.0 52 67.3
BcaB06g28396 Brassica carinata HOM05D006514 ORTHO05D008138 1.9e-11 71.6 47 68.1
BcaB06g28465 Brassica carinata HOM05D006514 ORTHO05D008138 1.9e-11 71.6 47 68.1
BolC4t27513H Brassica oleracea HOM05D006514 ORTHO05D008138 1.9e-11 71.6 47 68.1
BraA04t17890Z Brassica rapa HOM05D006514 ORTHO05D008138 1.9e-11 71.6 47 68.1
Migut.H00182 Erythranthe guttata HOM05D006514 ORTHO05D008138 1.9e-11 71.6 41 78.0
MD03G1065900 Malus domestica HOM05D006514 ORTHO05D008138 1.9e-11 71.6 52 67.3
Os04g0518650 Oryza sativa ssp. japonica HOM05D006514 ORTHO05D008138 1.9e-11 71.6 48 60.4
THA.LOC104815841 Tarenaya hassleriana HOM05D006514 ORTHO05D008138 1.9e-11 71.6 52 65.4
unitig_85.g27236 Utricularia gibba HOM05D006514 ORTHO05D008138 1.9e-11 71.6 50 70.0
GSVIVG01037960001 Vitis vinifera HOM05D006514 ORTHO05D008138 1.9e-11 71.6 52 69.2
AT2G30942 Arabidopsis thaliana HOM05D006514 ORTHO05D008138 2.5e-11 71.2 47 68.1
CSS0047171 Camellia sinensis var. sinensis HOM05D006514 ORTHO05D008138 4.3e-11 70.5 36 77.8
Medtr7g024350 Medicago truncatula HOM05D006514 ORTHO05D008138 4.3e-11 70.5 31 93.5
Oeu009866.1 Olea europaea HOM05D006514 ORTHO05D008138 4.3e-11 70.5 52 65.4
Zm00001eb368290 Zea mays HOM05D006514 ORTHO05D008138 4.3e-11 70.5 47 63.8
CARHR124460 Cardamine hirsuta HOM05D006514 ORTHO05D008138 5.6e-11 70.1 47 66.0
MD11G1070700 Malus domestica HOM05D006514 ORTHO05D008138 7.3e-11 69.7 52 65.4
CsaV3_5G038690 Cucumis sativus L. HOM05D006514 ORTHO05D008138 9.6e-11 69.3 39 74.4
CDE04G3777 Ceratophyllum demersum HOM05D006514 ORTHO05D008138 1.3e-10 68.9 39 76.9
PSO339G3417 Papaver somniferum HOM05D006514 ORTHO05D008138 1.6e-10 68.6 39 74.4
PSO801G0156 Papaver somniferum HOM05D006514 ORTHO05D008138 1.6e-10 68.6 39 74.4
TAR628G0909 Trochodendron aralioides HOM05D006514 ORTHO05D008138 2.1e-10 68.2 46 63.0
Sed0005431 Sechium edule HOM05D006514 ORTHO05D008138 2.8e-10 67.8 39 74.4
CAN.G358.121 Capsicum annuum HOM05D006514 ORTHO05D008138 3.6e-10 67.4 52 59.6
Nn1g05070 Nelumbo nucifera HOM05D006514 ORTHO05D008138 8.1e-10 66.2 39 71.8
Os07g0446600 Oryza sativa ssp. japonica HOM05D006514 ORTHO05D008138 8.1e-10 66.2 32 81.2
Os07g0446900 Oryza sativa ssp. japonica HOM05D006514 ORTHO05D008138 8.1e-10 66.2 48 62.5
PSO017G0544 Papaver somniferum HOM05D006514 ORTHO05D008138 8.1e-10 66.2 39 74.4
Ah.06g182360 Amaranthus hybridus HOM05D006514 ORTHO05D008138 1.4e-09 65.5 33 75.8
FAN11G3963 Fragaria x ananassa HOM05D006514 ORTHO05D008138 4.0e-09 63.9 52 63.5
FAN11G3335 Fragaria x ananassa HOM05D006514 ORTHO05D008138 9.0e-09 62.8 31 83.9
FAN16G1919 Fragaria x ananassa HOM05D006514 ORTHO05D008138 9.0e-09 62.8 31 83.9
ATR0733G176 Amborella trichopoda HOM05D006514 ORTHO05D008138 1.2e-08 62.4 36 69.4
Nitab4.5_0003410g0060 Nicotiana tabacum HOM05D006514 ORTHO05D008138 3.4e-08 60.8 45 66.7
FAN25G0650 Fragaria x ananassa HOM05D006514 ORTHO05D008138 4.4e-08 60.5 31 80.6
SEGI_00006 Sequoiadendron giganteum HOM05D006514 ORTHO05D008138 5.8e-08 60.1 43 60.5
Aa31LG1G7590 Aethionema arabicum HOM05D006514 ORTHO05D008138 1.7e-07 58.5 32 75.0
C04p41290 Brassica napus HOM05D006514 ORTHO05D008138 6.4e-07 56.6 31 71.0
Lsat_1_v5_gn_1_26540 Lactuca sativa HOM05D006514 ORTHO05D008138 4.2e-06 53.9 35 68.6


User provided reference genes

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