Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_07227_v3 Cicer arietinum L. HOM05D006083 ORTHO05D007634 0.0e+00 3262.6 1645 100.0
Psat3g185080 Pisum sativum HOM05D006083 ORTHO05D007634 0.0e+00 2503.8 1672 78.1
Medtr7g024000 Medicago truncatula HOM05D006083 ORTHO05D007634 0.0e+00 2440.6 1687 76.4
Lj1g0008101 Lotus japonicus HOM05D006083 ORTHO05D007634 0.0e+00 2170.6 1690 69.3
Glyma.18G288300 Glycine max HOM05D006083 ORTHO05D007634 0.0e+00 2120.1 1686 67.6
TPR.G15506 Trifolium pratense HOM05D006083 ORTHO05D007634 0.0e+00 2098.2 1313 81.4
VMungo1383G1537 Vigna mungo HOM05D006083 ORTHO05D007634 0.0e+00 1969.9 1690 64.2
arahy.Tifrunner.gnm1.ann1.ES2X5Y Arachis hypogaea HOM05D006083 ORTHO05D007634 0.0e+00 1896.3 1675 61.5
arahy.Tifrunner.gnm1.ann1.V7LDKI Arachis hypogaea HOM05D006083 ORTHO05D007634 0.0e+00 1896.3 1675 61.5
Lalb_Chr10g0091771 Lupinus albus HOM05D006083 ORTHO05D007634 0.0e+00 1610.9 1238 67.7
Lalb_Chr04g0257841 Lupinus albus HOM05D006083 ORTHO05D007634 0.0e+00 1593.6 1240 66.7
Ca_29789_v3 Cicer arietinum L. HOM05D006083 ORTHO05D007634 0.0e+00 1554.3 788 98.2
Cfa001507 Carpinus fangiana HOM05D006083 ORTHO05D007634 0.0e+00 1357.0 1622 48.5
Haze_17036 Corylus avellana HOM05D006083 ORTHO05D007634 0.0e+00 1345.5 1616 48.6
Phvul.008G013732 Phaseolus vulgaris HOM05D006083 ORTHO05D007634 0.0e+00 1276.5 934 68.6
QL08p059019 Quercus lobata HOM05D006083 ORTHO05D007634 0.0e+00 1256.1 1786 45.2
CiPaw.01G284100 Carya illinoinensis HOM05D006083 ORTHO05D007634 0.0e+00 1213.7 1759 43.7
Manes.07G113300 Manihot esculenta HOM05D006083 ORTHO05D007634 0.0e+00 1187.2 1721 43.5
Atru.chr12.505 Acer truncatum HOM05D006083 ORTHO05D007634 0.0e+00 1181.4 1573 45.8
Prupe.2G231200 Prunus persica HOM05D006083 ORTHO05D007634 0.0e+00 1161.0 1749 42.8
Potri.008G052500 Populus trichocarpa HOM05D006083 ORTHO05D007634 0.0e+00 1156.0 1603 44.7
Thecc.10G046700 Theobroma cacao HOM05D006083 ORTHO05D007634 0.0e+00 1142.5 1784 43.0
COL.COLO4_14970 Corchorus olitorius HOM05D006083 ORTHO05D007634 0.0e+00 1119.4 1768 41.7
Potri.010G208200 Populus trichocarpa HOM05D006083 ORTHO05D007634 0.0e+00 1116.7 1765 41.9
MD07G1193600 Malus domestica HOM05D006083 ORTHO05D007634 0.0e+00 1114.0 1708 42.0
Sabra08G0037800 Salix brachista HOM05D006083 ORTHO05D007634 0.0e+00 1104.0 1638 43.0
Gorai.012G069900 Gossypium raimondii HOM05D006083 ORTHO05D007634 0.0e+00 1094.3 1773 42.0
Gohir.D04G062600 Gossypium hirsutum HOM05D006083 ORTHO05D007634 0.0e+00 1087.8 1769 41.9
Gohir.A05G349900 Gossypium hirsutum HOM05D006083 ORTHO05D007634 2.9e-310 1069.3 1772 41.3
FAN06G0387 Fragaria x ananassa HOM05D006083 ORTHO05D007634 7.2e-309 1064.7 1751 40.4
FAN03G2083 Fragaria x ananassa HOM05D006083 ORTHO05D007634 6.1e-308 1061.6 1760 40.2
FAN06G5109 Fragaria x ananassa HOM05D006083 ORTHO05D007634 1.4e-307 1060.4 1621 41.6
FvH4_7g21930 Fragaria vesca HOM05D006083 ORTHO05D007634 7.5e-306 1054.7 1622 41.6
FAN01G1089 Fragaria x ananassa HOM05D006083 ORTHO05D007634 9.1e-304 1047.7 1760 39.9
CANSAT56G1432 Cannabis sativa HOM05D006083 ORTHO05D007634 8.0e-300 1034.6 1627 41.5
Dinv31433 Davidia involucrata HOM05D006083 ORTHO05D007634 1.3e-294 1017.3 1772 39.1
Duzib114G0803 Durio zibethinus HOM05D006083 ORTHO05D007634 8.0e-292 1008.1 1405 44.3
CSS0008531 Camellia sinensis var. sinensis HOM05D006083 ORTHO05D007634 1.8e-288 996.9 1770 39.0
TWI15G0674 Tripterygium wilfordii HOM05D006083 ORTHO05D007634 3.5e-287 992.6 1627 40.6
ClCG09G020050 Citrullus lanatus HOM05D006083 ORTHO05D007634 7.5e-282 974.9 1770 37.2
GSVIVG01016589001 Vitis vinifera HOM05D006083 ORTHO05D007634 2.9e-281 973.0 1635 40.2
Actinidia02966 Actinidia chinensis HOM05D006083 ORTHO05D007634 2.7e-279 966.5 1760 38.2
MELO3C025449.2 Cucumis melo HOM05D006083 ORTHO05D007634 3.5e-271 939.5 1773 37.6
CsaV3_5G026410 Cucumis sativus L. HOM05D006083 ORTHO05D007634 4.3e-269 932.6 1639 38.4
Rhsim03G0132700 Rhododendron simsii HOM05D006083 ORTHO05D007634 6.2e-268 928.7 1758 36.1
PGR142G3850 Punica granatum HOM05D006083 ORTHO05D007634 1.1e-264 917.9 1588 38.2
Sed0020975 Sechium edule HOM05D006083 ORTHO05D007634 6.8e-259 898.7 1753 37.1
Ciclev10030497m.g Citrus clementina HOM05D006083 ORTHO05D007634 1.2e-255 887.9 1702 38.3
Nn2g12936 Nelumbo nucifera HOM05D006083 ORTHO05D007634 3.3e-253 879.8 1812 35.7
Eucgr.G02918 Eucalyptus grandis HOM05D006083 ORTHO05D007634 5.4e-248 862.4 1598 36.8
Sopen04g005570 Solanum pennellii HOM05D006083 ORTHO05D007634 2.8e-236 823.5 1669 34.9
MBI14_g18543_MAGBIO Magnolia biondii HOM05D006083 ORTHO05D007634 2.4e-235 820.5 1738 34.1
Sc06g0002680 Simmondsia chinensis HOM05D006083 ORTHO05D007634 2.6e-234 817.0 1266 40.3
CAN.G786.23 Capsicum annuum HOM05D006083 ORTHO05D007634 6.4e-233 812.4 1665 35.1
Peaxi162Scf00060g00026 Petunia axillaris HOM05D006083 ORTHO05D007634 6.4e-233 812.4 1664 34.7
Aqoxy4G02985 Aquilegia oxysepala HOM05D006083 ORTHO05D007634 1.4e-232 811.2 1766 33.4
Hund12547 Selenicereus undatus HOM05D006083 ORTHO05D007634 1.8e-230 804.3 1674 35.8
Solyc04g011380.4 Solanum lycopersicum HOM05D006083 ORTHO05D007634 3.0e-230 803.5 1662 34.8
vmacro07157 Vaccinium macrocarpon HOM05D006083 ORTHO05D007634 3.7e-228 796.6 2094 30.4
Lj8C87G2 Lonicera japonica HOM05D006356 ORTHO05D007903 3.1e-227 793.5 1717 34.1
Lj1A934T60 Lonicera japonica HOM05D006083 ORTHO05D007634 5.3e-227 792.7 1321 39.2
TAR623G0128 Trochodendron aralioides HOM05D006083 ORTHO05D007634 1.7e-225 787.7 1668 35.1
FAN10G0925 Fragaria x ananassa HOM05D006083 ORTHO05D007634 1.9e-224 784.3 1345 40.6
EL10Ac2g03425 Beta vulgaris HOM05D006083 ORTHO05D007634 3.0e-222 776.9 1724 35.6
THA.LOC104810174 Tarenaya hassleriana HOM05D006083 ORTHO05D007634 1.1e-219 768.5 1706 34.6
Cc02_g08180 Coffea canephora HOM05D006083 ORTHO05D007634 4.2e-216 756.5 1650 35.2
CARHR134450 Cardamine hirsuta HOM05D006083 ORTHO05D007634 1.3e-209 734.9 1495 36.1
AUR62040954 Chenopodium quinoa HOM05D006083 ORTHO05D007634 2.9e-209 733.8 1736 34.2
CANSAT56G0880 Cannabis sativa HOM05D006083 ORTHO05D007634 3.0e-206 723.8 813 48.2
AL4G36990 Arabidopsis lyrata HOM05D006083 ORTHO05D007634 4.1e-203 713.4 1684 34.5
DCAR_027665 Daucus carota HOM05D006083 ORTHO05D007634 4.1e-203 713.4 1732 32.7
AUR62038373 Chenopodium quinoa HOM05D006083 ORTHO05D007634 2.6e-202 710.7 1671 34.5
Aa31LG5G20040 Aethionema arabicum HOM05D006083 ORTHO05D007634 1.2e-199 701.8 1687 33.9
AT2G39580 Arabidopsis thaliana HOM05D006083 ORTHO05D007634 2.7e-199 700.7 1679 34.5
Sp4g21870 Schrenkiella parvula HOM05D006083 ORTHO05D007634 6.1e-199 699.5 1584 34.1
Carub.0004s2165 Capsella rubella HOM05D006083 ORTHO05D007634 2.0e-197 694.5 1683 33.6
PSO339G3664 Papaver somniferum HOM05D006083 ORTHO05D007634 2.0e-197 694.5 1673 31.9
PSO384G3245 Papaver somniferum HOM05D006083 ORTHO05D007634 1.7e-196 691.4 1676 32.3
C04p67440 Brassica napus HOM05D006083 ORTHO05D007634 8.2e-196 689.1 1708 33.5
A04p30380 Brassica napus HOM05D006083 ORTHO05D007634 1.4e-195 688.3 1676 33.3
BraA04t18470Z Brassica rapa HOM05D006083 ORTHO05D007634 3.5e-194 683.7 1671 33.1
BolC4t28242H Brassica oleracea HOM05D006083 ORTHO05D007634 4.5e-194 683.3 1699 33.3
Thhalv10016135m.g Eutrema salsugineum HOM05D006083 ORTHO05D007634 1.1e-192 678.7 1700 33.1
HanXRQChr09g0247731 Helianthus annuus HOM05D006083 ORTHO05D007634 6.1e-191 672.9 1746 31.8
Oeu040905.3 Olea europaea HOM05D006083 ORTHO05D007634 1.1e-187 662.1 1289 35.6
SHI22592 Sapria himalayana HOM05D006083 ORTHO05D007634 1.6e-186 658.3 1704 32.2
Lsat_1_v5_gn_9_65161 Lactuca sativa HOM05D006083 ORTHO05D007634 8.0e-183 646.0 1693 33.0
RcHm_v2.0_Chr1g0366211 Rosa chinensis HOM05D006083 ORTHO05D007634 5.0e-177 626.7 638 50.8
TAR369G0895 Trochodendron aralioides HOM05D006083 ORTHO05D007634 9.8e-173 612.5 669 49.6
Cpa.g.sc1.374 Carica papaya HOM05D006083 ORTHO05D007634 6.3e-172 609.8 676 47.3
Nitab4.5_0005525g0010 Nicotiana tabacum HOM05D006083 ORTHO05D007634 1.0e-169 602.4 1749 31.2
Phvul.008G013666 Phaseolus vulgaris HOM05D006083 ORTHO05D007634 1.0e-166 592.4 610 59.2
ATR0559G184 Amborella trichopoda HOM05D006083 ORTHO05D007634 2.3e-166 591.3 1355 33.4
Nitab4.5_0003969g0020 Nicotiana tabacum HOM05D006083 ORTHO05D007634 1.1e-147 529.3 1353 33.9
CDE05G2458 Ceratophyllum demersum HOM05D006083 ORTHO05D007634 5.6e-144 516.9 1302 31.7
Zm00001eb028750 Zea mays HOM05D006083 ORTHO05D007634 2.4e-142 511.5 1613 29.8
RcHm_v2.0_Chr1g0366201 Rosa chinensis HOM05D006083 ORTHO05D007634 2.8e-127 461.5 1097 35.7
SEGI_22945 Sequoiadendron giganteum HOM05D006083 ORTHO05D007634 5.3e-118 430.6 898 31.7
FAN10G2882 Fragaria x ananassa HOM05D006083 ORTHO05D007634 4.9e-108 397.5 418 46.9
TPR.G40211 Trifolium pratense HOM05D006083 ORTHO05D007634 3.4e-93 348.2 353 60.3
Lalb_Chr04g0257831 Lupinus albus HOM05D006083 ORTHO05D007634 4.7e-90 337.8 425 52.9
BcaB06g29099 Brassica carinata HOM05D006083 ORTHO05D007634 5.7e-88 330.9 1135 31.0
Peaxi162Scf00060g00126 Petunia axillaris HOM05D006083 ORTHO05D007634 1.5e-85 322.8 526 38.0
Lalb_Chr10g0091761 Lupinus albus HOM05D006083 ORTHO05D007634 1.3e-84 319.7 419 50.6
Mapoly0075s0039 Marchantia polymorpha HOM05D006083 ORTHO05D007634 2.9e-84 318.5 890 28.3
HPP92_018996 Vanilla planifolia HOM05D006083 ORTHO05D007634 3.9e-81 308.1 627 32.7
Cpa.g.sc1.375 Carica papaya HOM05D006083 ORTHO05D007634 4.1e-78 298.1 619 37.0
SEGI_25206 Sequoiadendron giganteum HOM05D006083 ORTHO05D007634 2.7e-74 285.4 538 33.1
Ca_07226_v3 Cicer arietinum L. HOM05D006083 ORTHO05D007634 8.8e-65 253.8 149 85.9
Os12g0566500 Oryza sativa ssp. japonica HOM05D006083 ORTHO05D007634 2.2e-63 249.2 455 33.2
TAR369G0795 Trochodendron aralioides HOM05D006083 ORTHO05D007634 1.7e-60 239.6 736 31.9
AagrBONN_evm.TU.Sc2ySwM_228.2795 Anthoceros agrestis HOM05D000140 ORTHO05D007634 9.5e-59 233.8 638 29.6
Pp3c6_12750 Physcomitrium patens HOM05D006083 ORTHO05D007634 6.8e-57 227.6 834 24.3
Ca_29897_v3 Cicer arietinum L. HOM05D006083 ORTHO05D007634 5.7e-56 224.6 113 95.6
SMO367G1201 Selaginella moellendorffii HOM05D006083 ORTHO05D007634 3.9e-52 211.8 1191 24.4
Actinidia07719 Actinidia chinensis HOM05D001446 ORTHO05D001360 4.4e-48 198.4 702 25.6
Glyma.02G093802 Glycine max HOM05D006083 ORTHO05D007634 6.4e-47 194.5 150 63.3
Hund24433 Selenicereus undatus HOM05D006083 ORTHO05D007634 9.9e-32 144.1 707 27.4
Oeu023787.1 Olea europaea HOM05D006083 ORTHO05D007634 6.9e-17 94.7 231 33.8
Cpa.g.sc1.376 Carica papaya HOM05D006083 ORTHO05D007634 3.4e-16 92.4 295 30.5
ATR0618G162 Amborella trichopoda HOM05D006083 ORTHO05D007634 1.9e-14 86.7 105 45.7
HPP92_018997 Vanilla planifolia HOM05D006083 ORTHO05D007634 7.1e-14 84.7 510 26.7
Sc06g0002670 Simmondsia chinensis HOM05D006083 ORTHO05D007634 4.3e-11 75.5 251 29.5
RcHm_v2.0_Chr3g0492191 Rosa chinensis HOM05D006083 ORTHO05D007634 6.2e-10 71.6 222 34.7
AL7G29000 Arabidopsis lyrata HOM05D006083 ORTHO05D011291 8.1e-10 71.2 45 60.0
Lsat_1_v5_gn_7_4020 Lactuca sativa HOM05D006083 ORTHO05D007634 8.1e-10 71.2 59 62.7


User provided reference genes

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