Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_07225_v3 Cicer arietinum L. HOM05D019883 ORTHO05D020439 1.5e-166 589.3 276 100.0
Ca_29788_v3 Cicer arietinum L. HOM05D019883 ORTHO05D020439 1.5e-166 589.3 276 100.0
TPR.G24297 Trifolium pratense HOM05D019883 ORTHO05D020439 4.1e-116 421.8 265 74.0
Psat0s192g0120 Pisum sativum HOM05D019883 ORTHO05D020439 8.6e-114 414.1 264 72.3
Medtr7g023950 Medicago truncatula HOM05D019883 ORTHO05D020439 1.7e-101 373.2 260 68.5
Lj6g0000145 Lotus japonicus HOM05D019883 ORTHO05D020439 1.5e-78 297.0 255 57.6
Lalb_Chr16g0387961 Lupinus albus HOM05D000007 ORTHO05D020439 2.3e-34 150.2 236 36.9
Lj4g0007807 Lotus japonicus HOM05D000007 ORTHO05D000039 7.7e-30 135.2 252 35.3
Sed0015533 Sechium edule HOM05D000007 ORTHO05D000039 2.8e-24 116.7 263 32.3
Sed0011783 Sechium edule HOM05D000007 ORTHO05D000039 1.2e-22 111.3 258 31.8
Prupe.6G320600 Prunus persica HOM05D000007 ORTHO05D000039 5.0e-21 105.9 267 28.5
RcHm_v2.0_Chr3g0456241 Rosa chinensis HOM05D000007 ORTHO05D000039 9.4e-20 101.7 261 29.9
MELO3C030704.2 Cucumis melo HOM05D000007 ORTHO05D000039 2.1e-19 100.5 257 30.0
RcHm_v2.0_Chr3g0456251 Rosa chinensis HOM05D000007 ORTHO05D000039 4.0e-18 96.3 261 29.9
Sed0002351 Sechium edule HOM05D000007 ORTHO05D000039 8.8e-18 95.1 262 30.2
MELO3C009397.2 Cucumis melo HOM05D000007 ORTHO05D000039 2.6e-17 93.6 267 30.7
Sed0023240 Sechium edule HOM05D000007 ORTHO05D000039 2.6e-17 93.6 214 32.7
CsaV3_3G035340 Cucumis sativus L. HOM05D000007 ORTHO05D000039 1.3e-16 91.3 263 30.4
RcHm_v2.0_Chr6g0293881 Rosa chinensis HOM05D000007 ORTHO05D000039 1.3e-16 91.3 267 31.5
Gorai.008G098100 Gossypium raimondii HOM05D000007 ORTHO05D000039 1.7e-16 90.9 256 27.7
RcHm_v2.0_Chr3g0456291 Rosa chinensis HOM05D000007 ORTHO05D000039 2.8e-16 90.1 270 28.1
Gohir.D12G088200 Gossypium hirsutum HOM05D000007 ORTHO05D000039 6.3e-16 89.0 256 27.7
MD17G1253000 Malus domestica HOM05D000007 ORTHO05D000039 8.3e-16 88.6 275 28.0
RcHm_v2.0_Chr6g0293911 Rosa chinensis HOM05D000007 ORTHO05D000039 8.3e-16 88.6 267 31.1
COL.COLO4_12256 Corchorus olitorius HOM05D000007 ORTHO05D000039 1.1e-15 88.2 256 27.7
Nitab4.5_0000544g0010 Nicotiana tabacum HOM05D000007 ORTHO05D000039 1.8e-15 87.4 262 28.6
CsaV3_3G035370 Cucumis sativus L. HOM05D000007 ORTHO05D000039 3.1e-15 86.7 271 29.2
Sed0024551 Sechium edule HOM05D000007 ORTHO05D000039 3.1e-15 86.7 266 30.8
MD17G1251300 Malus domestica HOM05D000007 ORTHO05D000039 5.3e-15 85.9 280 29.3
Cfa000452 Carpinus fangiana HOM05D000007 ORTHO05D000039 1.6e-14 84.3 270 29.3
Duzib187G1873 Durio zibethinus HOM05D000007 ORTHO05D000039 2.0e-14 84.0 256 27.7
Nitab4.5_0000910g0010 Nicotiana tabacum HOM05D000007 ORTHO05D000039 2.7e-14 83.6 259 29.3
FvH4_6g06680 Fragaria vesca HOM05D000007 ORTHO05D000039 3.5e-14 83.2 265 27.9
MD17G1255900 Malus domestica HOM05D000007 ORTHO05D000039 3.5e-14 83.2 229 30.1
Manes.04G093401 Manihot esculenta HOM05D000007 ORTHO05D000039 3.5e-14 83.2 260 27.7
FAN24G1599 Fragaria x ananassa HOM05D000007 ORTHO05D000039 4.5e-14 82.8 256 28.1
Cfa000449 Carpinus fangiana HOM05D000007 ORTHO05D000039 5.9e-14 82.4 261 27.6
FvH4_2g25660 Fragaria vesca HOM05D000007 ORTHO05D000039 5.9e-14 82.4 273 27.8
FvH4_6g06670 Fragaria vesca HOM05D000007 ORTHO05D000039 5.9e-14 82.4 261 27.2
CsaV3_3G036390 Cucumis sativus L. HOM05D000007 ORTHO05D000039 7.7e-14 82.0 281 29.9
FvH4_6g06820 Fragaria vesca HOM05D000007 ORTHO05D000039 7.7e-14 82.0 262 28.2
PGSC0003DMG400014981 Solanum tuberosum HOM05D000007 ORTHO05D000039 7.7e-14 82.0 256 28.5
Cfa000440 Carpinus fangiana HOM05D000007 ORTHO05D000039 1.0e-13 81.6 261 28.0
Manes.04G093500 Manihot esculenta HOM05D000007 ORTHO05D000039 1.3e-13 81.3 217 30.4
QL03p020720 Quercus lobata HOM05D000007 ORTHO05D000039 1.3e-13 81.3 263 27.8
QL03p020743 Quercus lobata HOM05D000007 ORTHO05D000039 1.3e-13 81.3 263 28.1
QL03p020817 Quercus lobata HOM05D000007 ORTHO05D000039 1.3e-13 81.3 263 28.1
QL03p021906 Quercus lobata HOM05D000007 ORTHO05D000039 1.3e-13 81.3 263 27.8
Cfa000455 Carpinus fangiana HOM05D000007 ORTHO05D000039 1.7e-13 80.9 273 27.8
Cfa000463 Carpinus fangiana HOM05D000007 ORTHO05D000039 1.7e-13 80.9 229 29.3
Cfa000453 Carpinus fangiana HOM05D000007 ORTHO05D000039 2.2e-13 80.5 230 30.4
Nitab4.5_0000217g0110 Nicotiana tabacum HOM05D000007 ORTHO05D000039 2.2e-13 80.5 262 27.1
QL03p021893 Quercus lobata HOM05D000007 ORTHO05D000039 2.9e-13 80.1 263 27.8
FAN24G0319 Fragaria x ananassa HOM05D000007 ORTHO05D000039 3.8e-13 79.7 273 27.1
Peaxi162Scf00326g00061 Petunia axillaris HOM05D000007 ORTHO05D000039 5.0e-13 79.3 250 27.2
MD17G1255800 Malus domestica HOM05D000007 ORTHO05D000039 6.5e-13 79.0 277 27.8
MSTRG.14886 Avicennia marina HOM05D000007 ORTHO05D000039 8.5e-13 78.6 250 28.0
MD17G1252300 Malus domestica HOM05D000007 ORTHO05D000039 8.5e-13 78.6 280 26.4
MD17G1252700 Malus domestica HOM05D000007 ORTHO05D000039 8.5e-13 78.6 280 27.1
TWI53G1032 Tripterygium wilfordii HOM05D000007 ORTHO05D000039 8.5e-13 78.6 265 27.2
Cfa000499 Carpinus fangiana HOM05D000007 ORTHO05D000039 1.1e-12 78.2 274 28.8
MD17G1255300 Malus domestica HOM05D000007 ORTHO05D000039 1.1e-12 78.2 280 26.8
vmacro05999 Vaccinium macrocarpon HOM05D000007 ORTHO05D000039 1.1e-12 78.2 209 31.1
Cfa000500 Carpinus fangiana HOM05D000007 ORTHO05D000039 3.2e-12 76.6 266 27.4
Gohir.A12G083765 Gossypium hirsutum HOM05D000007 ORTHO05D000039 3.2e-12 76.6 221 27.1
Cfa007564 Carpinus fangiana HOM05D000007 ORTHO05D000039 5.5e-12 75.9 257 26.1
Actinidia29351 Actinidia chinensis HOM05D000007 ORTHO05D000039 7.2e-12 75.5 244 25.4
Cfa007607 Carpinus fangiana HOM05D000007 ORTHO05D000039 9.4e-12 75.1 189 29.1
QL08p013898 Quercus lobata HOM05D000007 ORTHO05D000039 1.6e-11 74.3 265 27.9
Cfa000443 Carpinus fangiana HOM05D000007 ORTHO05D000039 3.6e-11 73.2 221 29.0
Peaxi162Scf00326g00043 Petunia axillaris HOM05D000007 ORTHO05D000039 3.6e-11 73.2 230 27.0
Nitab4.5_0000211g0010 Nicotiana tabacum HOM05D000007 ORTHO05D000039 4.7e-11 72.8 228 27.2
Aqoxy2G00678 Aquilegia oxysepala HOM05D000007 ORTHO05D000039 6.1e-11 72.4 239 26.8
CAN.G281.1 Capsicum annuum HOM05D000007 ORTHO05D000039 8.0e-11 72.0 271 26.6
FvH4_6g06790 Fragaria vesca HOM05D000007 ORTHO05D000039 8.0e-11 72.0 281 28.8
Cfa000428 Carpinus fangiana HOM05D000007 ORTHO05D000039 1.0e-10 71.6 281 27.0
Sed0009611 Sechium edule HOM05D000007 ORTHO05D000039 1.4e-10 71.2 258 29.8
CsaV3_3G041340 Cucumis sativus L. HOM05D000007 ORTHO05D000039 1.8e-10 70.9 194 28.9
RcHm_v2.0_Chr6g0262491 Rosa chinensis HOM05D000007 ORTHO05D000039 1.8e-10 70.9 238 26.9
TWI18G1039 Tripterygium wilfordii HOM05D000007 ORTHO05D000039 1.8e-10 70.9 238 27.3
ClCG10G019730 Citrullus lanatus HOM05D023299 ORTHO05D000039 2.3e-10 70.5 156 32.1
CiPaw.15G116700 Carya illinoinensis HOM05D000007 ORTHO05D000039 3.0e-10 70.1 264 26.9
Peaxi162Scf00671g00021 Petunia axillaris HOM05D000007 ORTHO05D000039 3.0e-10 70.1 247 27.1
Haze_20972 Corylus avellana HOM05D000007 ORTHO05D000039 6.8e-10 68.9 189 31.7
Dinv06539 Davidia involucrata HOM05D000007 ORTHO05D000039 6.8e-10 68.9 182 26.4
FAN20G0405 Fragaria x ananassa HOM05D000007 ORTHO05D000039 6.8e-10 68.9 278 23.4
Actinidia18097 Actinidia chinensis HOM05D000007 ORTHO05D000039 1.2e-09 68.2 235 28.1
FAN14G0731 Fragaria x ananassa HOM05D002144 ORTHO05D002170 1.5e-09 67.8 205 27.3
Prupe.6G316700 Prunus persica HOM05D000007 ORTHO05D000039 1.5e-09 67.8 281 26.3
CsaV3_3G041370 Cucumis sativus L. HOM05D000007 ORTHO05D000039 2.6e-09 67.0 199 27.6
MD03G1104200 Malus domestica HOM05D000007 ORTHO05D005026 3.4e-09 66.6 270 22.6
Hma1.2p1_3211F.1_g333990 Hydrangea macrophylla HOM05D000007 ORTHO05D000039 4.4e-09 66.2 238 28.2
Aqoxy4G00863 Aquilegia oxysepala HOM05D000007 ORTHO05D000039 5.7e-09 65.9 206 27.2
Haze_07450 Corylus avellana HOM05D000007 ORTHO05D000039 1.3e-08 64.7 206 25.7
Rhsim05G0077300 Rhododendron simsii HOM05D000007 ORTHO05D013648 1.7e-08 64.3 240 24.2
Duzib192G0142 Durio zibethinus HOM05D000007 ORTHO05D000039 2.2e-08 63.9 198 27.3
PSO832G4569 Papaver somniferum HOM05D000007 ORTHO05D000017 2.8e-08 63.5 198 27.8
COL.COLO4_31897 Corchorus olitorius HOM05D000007 ORTHO05D000017 3.7e-08 63.2 280 27.5
Dinv44149 Davidia involucrata HOM05D000007 ORTHO05D000039 3.7e-08 63.2 284 25.4
QL03p024057 Quercus lobata HOM05D000007 ORTHO05D000039 3.7e-08 63.2 209 25.8
PGSC0003DMG400016927 Solanum tuberosum HOM05D000007 ORTHO05D000039 3.7e-08 63.2 200 26.0
PGSC0003DMG400020000 Solanum tuberosum HOM05D000007 ORTHO05D000039 3.7e-08 63.2 208 27.9
Sed0008650 Sechium edule HOM05D000007 ORTHO05D000039 4.8e-08 62.8 276 25.7
Haze_14482 Corylus avellana HOM05D000007 ORTHO05D000039 8.3e-08 62.0 196 27.0
Thecc.10G169100 Theobroma cacao HOM05D000007 ORTHO05D000039 8.3e-08 62.0 262 24.4
TWI53G1885 Tripterygium wilfordii HOM05D000007 ORTHO05D000039 8.3e-08 62.0 190 25.8
Cfa000451 Carpinus fangiana HOM05D000007 ORTHO05D000039 1.1e-07 61.6 267 25.5
Cfa007606 Carpinus fangiana HOM05D000007 ORTHO05D000039 1.1e-07 61.6 187 27.8
Lj3P550T16 Lonicera japonica HOM05D000007 ORTHO05D000017 1.1e-07 61.6 270 27.0
Sed0025093 Sechium edule HOM05D000007 ORTHO05D000039 1.1e-07 61.6 264 25.4
Cc02_g08310 Coffea canephora HOM05D000007 ORTHO05D000039 1.4e-07 61.2 220 24.5
Psat5g230600 Pisum sativum HOM05D000007 ORTHO05D000017 1.4e-07 61.2 181 28.2
Medtr4g102410 Medicago truncatula HOM05D000007 ORTHO05D000039 1.8e-07 60.8 176 24.4
Cfa000425 Carpinus fangiana HOM05D000007 ORTHO05D000039 2.4e-07 60.5 268 25.4
PSO135G0549 Papaver somniferum HOM05D000007 ORTHO05D000017 2.4e-07 60.5 199 26.6
CiPaw.15G116800 Carya illinoinensis HOM05D000007 ORTHO05D000039 3.1e-07 60.1 193 27.5
Hma1.2p1_1292F.1_g273710 Hydrangea macrophylla HOM05D000007 ORTHO05D000017 3.1e-07 60.1 267 24.3
FAN25G0241 Fragaria x ananassa HOM05D000007 ORTHO05D000017 7.0e-07 58.9 274 24.8
Lsat_1_v5_gn_7_77020 Lactuca sativa HOM05D000007 ORTHO05D000039 7.0e-07 58.9 237 24.1
Cfa000444 Carpinus fangiana HOM05D000007 ORTHO05D000039 9.1e-07 58.5 273 25.6
DCAR_004307 Daucus carota HOM05D000007 ORTHO05D000017 9.1e-07 58.5 262 23.3
Nitab4.5_0008389g0040 Nicotiana tabacum HOM05D000007 ORTHO05D000017 9.1e-07 58.5 216 25.9
THA.LOC104808704 Tarenaya hassleriana HOM05D000007 ORTHO05D000017 9.1e-07 58.5 204 26.5
CiPaw.15G117000 Carya illinoinensis HOM05D000007 ORTHO05D000039 1.6e-06 57.8 193 26.9
HanXRQChr02g0058201 Helianthus annuus HOM05D000007 ORTHO05D000017 1.6e-06 57.8 185 25.4
Hma1.2p1_0178F.1_g078430 Hydrangea macrophylla HOM05D000007 ORTHO05D000039 1.6e-06 57.8 288 22.9
Hma1.2p1_3645F.1_g337145 Hydrangea macrophylla HOM05D000007 ORTHO05D000017 2.0e-06 57.4 204 28.4
Hma1.2p1_3645F.1_g337150 Hydrangea macrophylla HOM05D000007 ORTHO05D000017 2.0e-06 57.4 204 28.4
Dinv38256 Davidia involucrata HOM05D000007 ORTHO05D000017 3.5e-06 56.6 220 27.3
FAN15G1935 Fragaria x ananassa HOM05D000007 ORTHO05D000017 4.5e-06 56.2 188 28.2
Lj3P550T42 Lonicera japonica HOM05D000007 ORTHO05D000017 4.5e-06 56.2 245 29.0
COL.COLO4_34567 Corchorus olitorius HOM05D007162 ORTHO05D007631 5.9e-06 55.8 153 28.1
Eucgr.I00070 Eucalyptus grandis HOM05D000007 ORTHO05D000039 5.9e-06 55.8 257 25.3
Lj3P918T26 Lonicera japonica HOM05D000007 ORTHO05D000017 5.9e-06 55.8 220 23.2
PSO339G5665 Papaver somniferum HOM05D000007 ORTHO05D000017 5.9e-06 55.8 184 26.6
TWI31G1434 Tripterygium wilfordii HOM05D000007 ORTHO05D000039 5.9e-06 55.8 241 24.9
Aqoxy1G04045 Aquilegia oxysepala HOM05D000007 ORTHO05D000017 7.7e-06 55.5 259 24.3
CiPaw.03G025900 Carya illinoinensis HOM05D000007 ORTHO05D000039 7.7e-06 55.5 152 26.3
Haze_06491 Corylus avellana HOM05D000007 ORTHO05D000039 7.7e-06 55.5 160 26.9


User provided reference genes

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