Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_07151_v3 Cicer arietinum L. HOM05D005625 ORTHO05D007564 3.7e-258 894.4 469 100.0
Ca_00793_v3 Cicer arietinum L. HOM05D005625 ORTHO05D007564 2.1e-245 852.0 469 95.1
Medtr2g029250 Medicago truncatula HOM05D005625 ORTHO05D007564 7.3e-214 747.3 535 74.2
TPR.G17519 Trifolium pratense HOM05D005625 ORTHO05D007564 4.7e-213 744.6 535 76.1
Lj6g0017830 Lotus japonicus HOM05D005625 ORTHO05D007564 1.3e-207 726.5 535 72.9
Psat1g169440 Pisum sativum HOM05D005625 ORTHO05D007564 1.4e-204 716.5 530 74.2
Lalb_Chr15g0088631 Lupinus albus HOM05D005625 ORTHO05D007564 6.6e-199 697.6 534 71.7
Glyma.09G021200 Glycine max HOM05D005625 ORTHO05D007564 8.3e-194 680.6 533 67.4
Phvul.006G130900 Phaseolus vulgaris HOM05D005625 ORTHO05D007564 2.3e-191 672.5 523 68.3
arahy.Tifrunner.gnm1.ann1.U40EKY Arachis hypogaea HOM05D005625 ORTHO05D007564 2.5e-190 669.1 580 62.8
arahy.Tifrunner.gnm1.ann1.I4CKLR Arachis hypogaea HOM05D005625 ORTHO05D007564 6.2e-173 611.3 548 61.3
arahy.Tifrunner.gnm1.ann1.0NEN23 Arachis hypogaea HOM05D005625 ORTHO05D007564 2.6e-171 605.9 589 57.9
arahy.Tifrunner.gnm1.ann1.23CDJN Arachis hypogaea HOM05D005625 ORTHO05D007564 2.9e-170 602.4 501 64.7
Thecc.08G177300 Theobroma cacao HOM05D005625 ORTHO05D007564 4.9e-170 601.7 531 60.5
Gohir.A13G116000 Gossypium hirsutum HOM05D005625 ORTHO05D007564 1.6e-168 596.7 534 58.4
Gohir.D13G119200 Gossypium hirsutum HOM05D005625 ORTHO05D007564 4.6e-168 595.1 532 58.3
Gorai.013G133700 Gossypium raimondii HOM05D005625 ORTHO05D007564 1.3e-167 593.6 532 58.1
Prupe.1G544200 Prunus persica HOM05D005625 ORTHO05D007564 1.3e-167 593.6 545 58.2
Haze_13951 Corylus avellana HOM05D005625 ORTHO05D007564 1.8e-167 593.2 540 57.8
CiPaw.04G063100 Carya illinoinensis HOM05D005625 ORTHO05D007564 6.7e-167 591.3 534 58.2
VMungo0540G1936 Vigna mungo HOM05D005625 ORTHO05D007564 8.7e-167 590.9 554 59.2
Rhsim02G0173300 Rhododendron simsii HOM05D005625 ORTHO05D007564 2.5e-166 589.3 531 59.1
TAR381G1540 Trochodendron aralioides HOM05D005625 ORTHO05D007564 3.3e-166 589.0 531 58.4
CSS0007097 Camellia sinensis var. sinensis HOM05D005625 ORTHO05D007564 5.3e-164 581.6 539 58.1
QL09p002063 Quercus lobata HOM05D005625 ORTHO05D007564 4.5e-163 578.6 538 58.2
GSVIVG01036380001 Vitis vinifera HOM05D005625 ORTHO05D007564 2.2e-162 576.2 542 57.2
Actinidia29383 Actinidia chinensis HOM05D005625 ORTHO05D007564 3.8e-162 575.5 531 57.6
COL.COLO4_24882 Corchorus olitorius HOM05D005625 ORTHO05D007564 4.9e-162 575.1 531 57.1
FvH4_5g33370 Fragaria vesca HOM05D005625 ORTHO05D007564 6.4e-162 574.7 539 57.1
Lj7C421T14 Lonicera japonica HOM05D005625 ORTHO05D007564 6.4e-162 574.7 538 56.3
FAN18G2766 Fragaria x ananassa HOM05D005625 ORTHO05D007564 8.4e-162 574.3 539 57.1
RcHm_v2.0_Chr7g0232101 Rosa chinensis HOM05D005625 ORTHO05D007564 8.4e-162 574.3 541 57.3
MD15G1395400 Malus domestica HOM05D005625 ORTHO05D007564 5.5e-161 571.6 533 56.7
CANSAT56G1751 Cannabis sativa HOM05D005625 ORTHO05D007564 9.3e-161 570.9 526 57.4
Aqoxy5G00836 Aquilegia oxysepala HOM05D005625 ORTHO05D007564 1.0e-159 567.4 537 56.8
PSO170G6063 Papaver somniferum HOM05D005625 ORTHO05D007564 5.1e-159 565.1 524 55.5
Manes.18G118300 Manihot esculenta HOM05D005625 ORTHO05D007564 6.7e-159 564.7 537 56.8
Cfa008087 Carpinus fangiana HOM05D005625 ORTHO05D007564 4.3e-158 562.0 532 56.4
TWI18G0532 Tripterygium wilfordii HOM05D005625 ORTHO05D007564 2.1e-157 559.7 545 55.2
PSO017G2953 Papaver somniferum HOM05D005625 ORTHO05D007564 3.7e-157 558.9 525 54.9
Potri.019G072700 Populus trichocarpa HOM05D005625 ORTHO05D007564 4.8e-157 558.5 539 55.5
Ciclev10014850m.g Citrus clementina HOM05D005625 ORTHO05D007564 6.2e-157 558.1 530 56.6
FAN04G0928 Fragaria x ananassa HOM05D005625 ORTHO05D007564 5.3e-156 555.1 558 54.7
Sc14g0005960 Simmondsia chinensis HOM05D005625 ORTHO05D007564 5.3e-156 555.1 536 56.0
MELO3C011830.2 Cucumis melo HOM05D005625 ORTHO05D007564 9.0e-156 554.3 532 55.8
Sabra19G0084000 Salix brachista HOM05D005625 ORTHO05D007564 3.4e-155 552.4 547 54.3
Ah.02g127420 Amaranthus hybridus HOM05D005625 ORTHO05D007564 1.0e-154 550.8 531 55.0
CsaV3_1G044090 Cucumis sativus L. HOM05D005625 ORTHO05D007564 2.2e-154 549.7 532 55.5
PGR044G1301 Punica granatum HOM05D005625 ORTHO05D007564 1.1e-153 547.4 531 54.2
DCAR_017431 Daucus carota HOM05D005625 ORTHO05D007564 1.6e-152 543.5 533 55.5
Cc10_g08740 Coffea canephora HOM05D005625 ORTHO05D007564 2.7e-152 542.7 531 54.2
AUR62024898 Chenopodium quinoa HOM05D005625 ORTHO05D007564 3.9e-151 538.9 525 53.9
Sopen11g018630 Solanum pennellii HOM05D005625 ORTHO05D007564 5.1e-151 538.5 527 53.5
Carub.0002s1829 Capsella rubella HOM05D005625 ORTHO05D007564 1.1e-150 537.3 532 53.6
DCAR_006209 Daucus carota HOM05D005625 ORTHO05D007564 1.5e-150 537.0 532 55.5
Oeu028924.1 Olea europaea HOM05D005625 ORTHO05D007564 3.3e-150 535.8 531 54.2
AUR62030641 Chenopodium quinoa HOM05D005625 ORTHO05D007564 1.6e-149 533.5 541 52.5
CARHR291240 Cardamine hirsuta HOM05D005625 ORTHO05D007564 2.8e-149 532.7 530 53.2
AT1G71440 Arabidopsis thaliana HOM05D005625 ORTHO05D007564 6.3e-149 531.6 532 54.1
AL2G31100 Arabidopsis lyrata HOM05D005625 ORTHO05D007564 1.4e-148 530.4 532 52.6
Sed0019265 Sechium edule HOM05D005625 ORTHO05D007564 2.4e-148 529.6 530 54.2
Migut.C01373 Erythranthe guttata HOM05D005625 ORTHO05D007564 1.2e-147 527.3 534 54.5
ECA232G1187 Erigeron canadensis HOM05D005625 ORTHO05D007564 5.9e-147 525.0 537 52.0
CAN.G990.6 Capsicum annuum HOM05D005625 ORTHO05D007564 1.7e-146 523.5 528 52.1
Thhalv10018392m.g Eutrema salsugineum HOM05D005625 ORTHO05D007564 1.1e-145 520.8 532 52.4
MBI03_g28415_MAGBIO Magnolia biondii HOM05D005625 ORTHO05D007564 1.1e-145 520.8 544 52.2
Sp5g26600 Schrenkiella parvula HOM05D005625 ORTHO05D007564 5.5e-145 518.5 534 52.2
MSTRG.25496 Avicennia marina HOM05D005625 ORTHO05D007564 1.2e-144 517.3 536 52.8
THA.LOC104810982 Tarenaya hassleriana HOM05D005625 ORTHO05D007564 2.7e-144 516.2 530 52.5
Duzib177G0227 Durio zibethinus HOM05D005625 ORTHO05D007564 3.0e-143 512.7 534 53.6
Aa31LG4G9140 Aethionema arabicum HOM05D005625 ORTHO05D007564 3.9e-143 512.3 534 51.5
EL10Ac6g14591 Beta vulgaris HOM05D005625 ORTHO05D007564 3.3e-142 509.2 584 47.4
HanXRQChr11g0326321 Helianthus annuus HOM05D005625 ORTHO05D007564 4.3e-142 508.8 524 51.3
Eucgr.K01840 Eucalyptus grandis HOM05D005625 ORTHO05D007564 3.7e-141 505.8 530 52.1
ATR1089G039 Amborella trichopoda HOM05D005625 ORTHO05D007564 5.1e-135 485.3 499 51.5
Lsat_1_v5_gn_2_82040 Lactuca sativa HOM05D005625 ORTHO05D007564 1.5e-134 483.8 524 50.4
Dinv16108 Davidia involucrata HOM05D005625 ORTHO05D007564 4.1e-132 475.7 455 55.2
BraA07t31336Z Brassica rapa HOM05D005625 ORTHO05D007564 4.5e-131 472.2 536 49.3
A07p37730 Brassica napus HOM05D005625 ORTHO05D007564 5.0e-130 468.8 536 48.9
BolC6t39611H Brassica oleracea HOM05D005625 ORTHO05D007564 5.0e-130 468.8 536 49.3
HPP92_026650 Vanilla planifolia HOM05D005625 ORTHO05D007564 1.1e-129 467.6 541 49.4
Zm00001eb233200 Zea mays HOM05D005625 ORTHO05D007564 2.1e-128 463.4 535 47.7
HPP92_015711 Vanilla planifolia HOM05D005625 ORTHO05D007564 1.8e-127 460.3 541 47.7
BcaC08g46580 Brassica carinata HOM05D005625 ORTHO05D007564 4.4e-126 455.7 534 47.6
Cpa.g.sc21.80 Carica papaya HOM05D005625 ORTHO05D007564 5.9e-123 445.3 468 52.1
unitig_578.g16118 Utricularia gibba HOM05D005625 ORTHO05D007564 5.9e-123 445.3 532 47.2
C06p45600 Brassica napus HOM05D005625 ORTHO05D007564 1.2e-120 437.6 536 47.0
SGA_v2.0_scaffold118G32606 Striga asiatica HOM05D005625 ORTHO05D007564 1.6e-120 437.2 544 47.1
Nn5g27281 Nelumbo nucifera HOM05D005625 ORTHO05D007564 1.4e-116 424.1 437 53.1
Solyc11g042470.1 Solanum lycopersicum HOM05D005625 ORTHO05D007564 6.5e-114 415.2 351 58.4
Peaxi162Scf00078g00533 Petunia axillaris HOM05D005625 ORTHO05D007564 3.2e-113 412.9 354 57.1
Nitab4.5_0001155g0010 Nicotiana tabacum HOM05D005625 ORTHO05D007564 9.4e-113 411.4 356 58.1
Sabra15G0066200 Salix brachista HOM05D005625 ORTHO05D007564 1.8e-108 397.1 359 58.8
Sabra15G0066000 Salix brachista HOM05D005625 ORTHO05D007564 7.0e-108 395.2 359 58.5
SMO145G0237 Selaginella moellendorffii HOM05D005625 ORTHO05D007564 7.2e-105 385.2 520 41.5
Mapoly0057s0080 Marchantia polymorpha HOM05D005625 ORTHO05D007564 3.7e-101 372.9 544 41.2
Pp3c13_4420 Physcomitrium patens HOM05D005625 ORTHO05D007564 1.2e-96 357.8 540 40.2
vmacro11035 Vaccinium macrocarpon HOM05D005625 ORTHO05D007564 1.6e-96 357.5 572 40.4
SHI16719 Sapria himalayana HOM05D005625 ORTHO05D007564 1.1e-84 318.2 452 46.0
AagrBONN_evm.TU.Sc2ySwM_344.4267 Anthoceros agrestis HOM05D005625 ORTHO05D007564 3.9e-74 283.1 362 41.4
Pp3c9_6720 Physcomitrium patens HOM05D005625 ORTHO05D007564 2.5e-73 280.4 551 32.5
Atru.chr11.652 Acer truncatum HOM05D005625 ORTHO05D007564 1.2e-67 261.5 289 51.6
ClCG03G011780 Citrullus lanatus HOM05D005625 ORTHO05D007564 2.1e-64 250.8 290 50.0
CBR_g2823 Chara braunii HOM05D005625 ORTHO05D007564 8.4e-61 238.8 551 32.3
PGSC0003DMG400019987 Solanum tuberosum HOM05D005625 ORTHO05D007564 7.1e-52 209.1 160 65.0
ClCG03G011750 Citrullus lanatus HOM05D005625 ORTHO05D007564 2.7e-51 207.2 152 66.4
AagrBONN_evm.TU.Sc2ySwM_344.5166 Anthoceros agrestis HOM05D005625 ORTHO05D007564 9.6e-49 198.7 391 32.7
SEGI_17074 Sequoiadendron giganteum HOM05D005625 ORTHO05D007564 1.8e-47 194.5 287 42.9
PRCOL_00002543 Prasinoderma coloniale HOM05D005625 ORTHO05D007564 7.1e-44 182.6 560 27.3
Os05g0105300 Oryza sativa ssp. japonica HOM05D005625 ORTHO05D007564 9.3e-44 182.2 168 53.6
MCO15G211 Micromonas commoda HOM05D005625 ORTHO05D007564 3.5e-43 180.3 569 27.4
Nitab4.5_0000213g0250 Nicotiana tabacum HOM05D005625 ORTHO05D007564 4.6e-43 179.9 162 56.2
Glyma.15G127633 Glycine max HOM05D005625 ORTHO05D007564 1.3e-42 178.3 123 70.7
Nitab4.5_0000213g0260 Nicotiana tabacum HOM05D005625 ORTHO05D007564 8.2e-40 169.1 127 66.9
FAN08G2869 Fragaria x ananassa HOM05D005625 ORTHO05D007564 1.3e-37 161.8 116 69.0
Peaxi162Scf00078g00534 Petunia axillaris HOM05D005625 ORTHO05D007564 2.9e-37 160.6 114 68.4
Cre02.g095113 Chlamydomonas reinhardtii HOM05D005625 ORTHO05D007564 8.4e-37 159.1 244 40.2
Nitab4.5_0001155g0020 Nicotiana tabacum HOM05D005625 ORTHO05D007564 6.9e-31 139.4 113 62.8
TPR.G26547 Trifolium pratense HOM05D005625 ORTHO05D022022 2.0e-30 137.9 152 52.6
Hund08558 Selenicereus undatus HOM05D005625 ORTHO05D007564 5.9e-30 136.3 85 77.6
BcaB04g17633 Brassica carinata HOM05D005625 ORTHO05D007564 8.5e-29 132.5 100 66.0
Glyma.15G127567 Glycine max HOM05D005625 ORTHO05D007564 2.7e-27 127.5 77 81.8
Solyc11g042500.3 Solanum lycopersicum HOM05D005625 ORTHO05D007564 7.4e-25 119.4 83 71.1
arahy.Tifrunner.gnm1.ann1.6SNM9F Arachis hypogaea HOM05D005625 ORTHO05D007564 9.7e-17 92.4 114 49.1
arahy.Tifrunner.gnm1.ann1.GWKT0Q Arachis hypogaea HOM05D005625 ORTHO05D007564 1.8e-15 88.2 124 45.2
C02p28970 Brassica napus HOM05D005625 ORTHO05D022022 3.5e-14 84.0 103 43.7
BolC2t08946H Brassica oleracea HOM05D005625 ORTHO05D022022 1.7e-13 81.6 71 53.5
A02p17310 Brassica napus HOM05D005625 ORTHO05D022022 3.2e-12 77.4 71 50.7
BraA02t06779Z Brassica rapa HOM05D005625 ORTHO05D022022 3.2e-12 77.4 71 50.7
arahy.Tifrunner.gnm1.ann1.P90V4Z Arachis hypogaea HOM05D002479 ORTHO05D002675 9.7e-09 65.9 49 67.3
ClCG03G011760 Citrullus lanatus HOM05D000004 ORTHO05D000002 6.3e-08 63.2 73 42.5
arahy.Tifrunner.gnm1.ann1.E660H8 Arachis hypogaea HOM05D005625 ORTHO05D007564 3.1e-07 60.8 69 47.8
arahy.Tifrunner.gnm1.ann1.KG76U8 Arachis hypogaea HOM05D005625 ORTHO05D007564 3.1e-07 60.8 69 47.8
arahy.Tifrunner.gnm1.ann1.69Z87Y Arachis hypogaea HOM05D005625 ORTHO05D007564 9.1e-07 59.3 86 43.0


User provided reference genes

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