Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_07032_v3 Cicer arietinum L. HOM05D002468 ORTHO05D009172 1.3e-102 376.3 188 100.0
Medtr7g006570 Medicago truncatula HOM05D002468 ORTHO05D009172 4.4e-85 318.2 183 84.7
TPR.G9727 Trifolium pratense HOM05D002468 ORTHO05D009172 9.1e-83 310.5 185 85.4
Lj1g0015804 Lotus japonicus HOM05D002468 ORTHO05D009172 1.7e-76 289.7 188 80.3
Phvul.008G009400 Phaseolus vulgaris HOM05D002468 ORTHO05D009172 2.4e-75 285.8 186 77.4
VMungo1383G2635 Vigna mungo HOM05D002468 ORTHO05D009172 3.1e-75 285.4 186 76.3
Lalb_Chr04g0257311 Lupinus albus HOM05D002468 ORTHO05D009172 1.2e-69 266.9 189 73.0
Psat3g206960 Pisum sativum HOM05D002468 ORTHO05D009172 1.5e-69 266.5 191 74.9
Prupe.1G214100 Prunus persica HOM05D002468 ORTHO05D009172 2.7e-66 255.8 189 69.3
Glyma.18G292600 Glycine max HOM05D002468 ORTHO05D009172 1.0e-65 253.8 186 70.4
Nn4g22124 Nelumbo nucifera HOM05D002468 ORTHO05D009172 2.9e-65 252.3 157 77.1
Cfa009456 Carpinus fangiana HOM05D002468 ORTHO05D009172 2.8e-63 245.7 170 70.6
ClCG07G011930 Citrullus lanatus HOM05D002468 ORTHO05D009172 8.0e-63 244.2 157 74.5
Ciclev10005642m.g Citrus clementina HOM05D002468 ORTHO05D009172 1.4e-62 243.4 140 80.7
FAN17G0051 Fragaria x ananassa HOM05D002468 ORTHO05D005371 1.4e-62 243.4 137 81.8
FvH4_4g22550 Fragaria vesca HOM05D002468 ORTHO05D009172 2.3e-62 242.7 137 81.0
FAN07G2873 Fragaria x ananassa HOM05D002468 ORTHO05D009172 2.3e-62 242.7 137 81.8
Actinidia22113 Actinidia chinensis HOM05D002468 ORTHO05D005371 3.0e-62 242.3 152 76.3
Actinidia30582 Actinidia chinensis HOM05D002468 ORTHO05D009172 3.0e-62 242.3 145 79.3
TAR622G1298 Trochodendron aralioides HOM05D002468 ORTHO05D009172 3.0e-62 242.3 193 63.7
Haze_12509 Corylus avellana HOM05D002468 ORTHO05D005371 4.0e-62 241.9 162 72.8
RcHm_v2.0_Chr4g0428781 Rosa chinensis HOM05D002468 ORTHO05D009172 5.2e-62 241.5 140 78.6
Atru.chr12.1429 Acer truncatum HOM05D002468 ORTHO05D009172 8.8e-62 240.7 193 64.8
QL03p049029 Quercus lobata HOM05D002468 ORTHO05D009172 2.0e-61 239.6 142 79.6
Sabra01G0047500 Salix brachista HOM05D002468 ORTHO05D009172 4.4e-61 238.4 147 77.6
TWI75G1838 Tripterygium wilfordii HOM05D002468 ORTHO05D009172 7.5e-61 237.7 184 65.8
TWI36G1656 Tripterygium wilfordii HOM05D002468 ORTHO05D009172 9.8e-61 237.3 156 73.7
Aqoxy5G03072 Aquilegia oxysepala HOM05D002468 ORTHO05D009172 1.7e-60 236.5 167 67.1
Manes.08G100500 Manihot esculenta HOM05D002468 ORTHO05D009172 1.7e-60 236.5 150 75.3
Potri.001G068300 Populus trichocarpa HOM05D002468 ORTHO05D009172 1.7e-60 236.5 143 78.3
CSS0032033 Camellia sinensis var. sinensis HOM05D002468 ORTHO05D005371 2.2e-60 236.1 180 67.8
MD16G1141800 Malus domestica HOM05D002468 ORTHO05D009172 2.2e-60 236.1 173 68.8
Cc11_g14950 Coffea canephora HOM05D002468 ORTHO05D009172 3.7e-60 235.3 177 68.4
CiPaw.05G100600 Carya illinoinensis HOM05D002468 ORTHO05D009172 4.9e-60 235.0 199 62.8
Dinv17538 Davidia involucrata HOM05D002468 ORTHO05D009172 4.9e-60 235.0 184 67.9
Hma1.2p1_1436F.1_g283230 Hydrangea macrophylla HOM05D002468 ORTHO05D009172 4.9e-60 235.0 143 78.3
vmacro01016 Vaccinium macrocarpon HOM05D002468 ORTHO05D009172 4.9e-60 235.0 143 76.9
GSVIVG01001099001 Vitis vinifera HOM05D002468 ORTHO05D009172 8.3e-60 234.2 181 64.1
Nitab4.5_0002569g0030 Nicotiana tabacum HOM05D002468 ORTHO05D009172 1.4e-59 233.4 137 79.6
CAN.G624.2 Capsicum annuum HOM05D002468 ORTHO05D009172 1.8e-59 233.0 136 79.4
MELO3C017816.2 Cucumis melo HOM05D002468 ORTHO05D009172 2.4e-59 232.6 161 71.4
CsaV3_4G002230 Cucumis sativus L. HOM05D002468 ORTHO05D009172 2.4e-59 232.6 161 71.4
Rhsim12G0017000 Rhododendron simsii HOM05D002468 ORTHO05D009172 2.4e-59 232.6 159 69.8
ECA246G0169 Erigeron canadensis HOM05D002468 ORTHO05D005371 4.1e-59 231.9 137 75.9
Solyc11g033284.1 Solanum lycopersicum HOM05D002468 ORTHO05D009172 5.4e-59 231.5 136 80.1
Sopen11g017130 Solanum pennellii HOM05D002468 ORTHO05D009172 7.0e-59 231.1 180 65.6
PGSC0003DMG401028027 Solanum tuberosum HOM05D002468 ORTHO05D009172 7.0e-59 231.1 136 80.1
Nitab4.5_0004349g0030 Nicotiana tabacum HOM05D002468 ORTHO05D009172 1.2e-58 230.3 137 78.8
Eucgr.G01979 Eucalyptus grandis HOM05D002468 ORTHO05D009172 1.6e-58 229.9 141 78.0
Peaxi162Scf00842g00418 Petunia axillaris HOM05D002468 ORTHO05D009172 7.8e-58 227.6 200 62.5
Sed0016874 Sechium edule HOM05D002468 ORTHO05D009172 1.0e-57 227.3 161 70.2
Thecc.02G191300 Theobroma cacao HOM05D002468 ORTHO05D009172 1.0e-57 227.3 145 75.2
Glyma.02G090600 Glycine max HOM05D002468 ORTHO05D009172 1.3e-57 226.9 158 72.2
MSTRG.8059 Avicennia marina HOM05D002468 ORTHO05D009172 2.3e-57 226.1 161 68.3
Sp6g30610 Schrenkiella parvula HOM05D002468 ORTHO05D009172 2.9e-57 225.7 199 60.3
A02p01900 Brassica napus HOM05D002468 ORTHO05D009172 3.8e-57 225.3 163 68.7
BraA02t05163Z Brassica rapa HOM05D002468 ORTHO05D009172 3.8e-57 225.3 163 68.7
Aa31LG3G14280 Aethionema arabicum HOM05D002468 ORTHO05D009172 6.6e-57 224.6 209 58.4
Migut.K01048 Erythranthe guttata HOM05D002468 ORTHO05D009172 6.6e-57 224.6 140 74.3
Lsat_1_v5_gn_3_32621 Lactuca sativa HOM05D002468 ORTHO05D009172 6.6e-57 224.6 141 73.8
DCAR_026442 Daucus carota HOM05D002468 ORTHO05D009172 8.6e-57 224.2 143 74.1
BcaNung01157 Brassica carinata HOM05D002468 ORTHO05D009172 1.9e-56 223.0 193 61.7
BcaNung01882 Brassica carinata HOM05D002468 ORTHO05D009172 3.3e-56 222.2 137 77.4
THA.LOC104825606 Tarenaya hassleriana HOM05D002468 ORTHO05D009172 3.3e-56 222.2 139 76.3
CARHR200020 Cardamine hirsuta HOM05D002468 ORTHO05D009172 4.3e-56 221.9 140 76.4
AL6G24030 Arabidopsis lyrata HOM05D002468 ORTHO05D009172 5.6e-56 221.5 199 60.8
CANSAT80G1997 Cannabis sativa HOM05D002468 ORTHO05D009172 5.6e-56 221.5 139 73.4
Carub.0006s1157 Capsella rubella HOM05D002468 ORTHO05D009172 5.6e-56 221.5 199 61.3
Gorai.012G126000 Gossypium raimondii HOM05D002468 ORTHO05D009172 5.6e-56 221.5 180 62.2
PSO017G2800 Papaver somniferum HOM05D002468 ORTHO05D009172 5.6e-56 221.5 138 73.2
Gohir.D04G141000 Gossypium hirsutum HOM05D002468 ORTHO05D009172 7.3e-56 221.1 180 62.2
AT5G13410 Arabidopsis thaliana HOM05D002468 ORTHO05D009172 1.6e-55 219.9 199 60.3
Sc11g0000070 Simmondsia chinensis HOM05D002468 ORTHO05D009172 2.1e-55 219.5 170 63.5
ATR0582G095 Amborella trichopoda HOM05D002468 ORTHO05D009172 1.8e-54 216.5 118 85.6
Aqoxy5G03073 Aquilegia oxysepala HOM05D002468 ORTHO05D009172 1.8e-54 216.5 199 56.3
Zm00001eb040970 Zea mays HOM05D002468 ORTHO05D009172 1.8e-54 216.5 141 75.9
Os07g0133700 Oryza sativa ssp. japonica HOM05D002468 ORTHO05D009172 3.0e-54 215.7 135 76.3
HPP92_024421 Vanilla planifolia HOM05D002468 ORTHO05D009172 3.0e-54 215.7 163 66.9
PGR119G1456 Punica granatum HOM05D002468 ORTHO05D009172 4.0e-54 215.3 138 74.6
AUR62041001 Chenopodium quinoa HOM05D002468 ORTHO05D009172 8.9e-54 214.2 161 69.6
Thhalv10014743m.g Eutrema salsugineum HOM05D002468 ORTHO05D009172 8.9e-54 214.2 136 77.2
CDE06G1087 Ceratophyllum demersum HOM05D002468 ORTHO05D009172 4.4e-53 211.8 170 62.9
Oeu010258.1 Olea europaea HOM05D002468 ORTHO05D009172 7.5e-53 211.1 171 63.7
EL10Ac7g17009 Beta vulgaris HOM05D002468 ORTHO05D009172 2.2e-52 209.5 115 84.3
C02p06120 Brassica napus HOM05D002468 ORTHO05D009172 2.2e-52 209.5 139 73.4
BolC2t06553H Brassica oleracea HOM05D002468 ORTHO05D009172 1.1e-51 207.2 196 57.1
SEGI_23050 Sequoiadendron giganteum HOM05D002468 ORTHO05D009172 1.1e-51 207.2 138 72.5
SGA_v2.0_scaffold258G45770 Striga asiatica HOM05D002468 ORTHO05D009172 1.5e-48 196.8 132 69.7
MBI11_g34559_MAGBIO Magnolia biondii HOM05D002468 ORTHO05D009172 3.3e-48 195.7 125 73.6
AagrBONN_evm.TU.Sc2ySwM_344.1577 Anthoceros agrestis HOM05D002468 ORTHO05D009172 4.3e-48 195.3 182 57.7
Lj6A840G36 Lonicera japonica HOM05D002468 ORTHO05D009172 5.6e-48 194.9 106 82.1
Pp3c16_12110 Physcomitrium patens HOM05D002468 ORTHO05D009172 2.1e-47 193.0 114 75.4
Ah.06g186920 Amaranthus hybridus HOM05D002468 ORTHO05D009172 8.0e-47 191.0 129 73.6
Mapoly0061s0100 Marchantia polymorpha HOM05D002468 ORTHO05D009172 1.5e-45 186.8 114 73.7
Pp3c5_13790 Physcomitrium patens HOM05D002468 ORTHO05D009172 1.5e-45 186.8 131 66.4
SMO137G0309 Selaginella moellendorffii HOM05D002468 ORTHO05D009172 8.3e-44 181.0 106 78.3
Cpa.g.sc38.65 Carica papaya HOM05D002468 ORTHO05D009172 1.1e-43 180.6 93 88.2
CBR_g38077 Chara braunii HOM05D002468 ORTHO05D009172 2.7e-42 176.0 109 69.7
arahy.Tifrunner.gnm1.ann1.PEQR69 Arachis hypogaea HOM05D002468 ORTHO05D009172 2.1e-39 166.4 179 54.7
arahy.Tifrunner.gnm1.ann1.QPD63Z Arachis hypogaea HOM05D002468 ORTHO05D009172 2.1e-39 166.4 179 54.7
Cre12.g534700 Chlamydomonas reinhardtii HOM05D002468 ORTHO05D009172 1.3e-36 157.1 140 54.3
Gohir.A04G101800 Gossypium hirsutum HOM05D002468 ORTHO05D009172 2.7e-34 149.4 180 48.3
PRCOL_00000716 Prasinoderma coloniale HOM05D002468 ORTHO05D009172 7.6e-29 131.3 107 58.9
Hma1.2p1_1436F.1_g283220 Hydrangea macrophylla HOM05D002468 ORTHO05D009172 5.4e-27 125.2 110 59.1
THA.LOC104816706 Tarenaya hassleriana HOM05D002468 ORTHO05D009172 5.1e-25 118.6 63 84.1
MCO06G148 Micromonas commoda HOM05D002468 ORTHO05D009172 3.5e-18 95.9 94 52.1
MD13G1131500 Malus domestica HOM05D002468 ORTHO05D009172 3.9e-17 92.4 56 75.0
QL02p011811 Quercus lobata HOM05D002468 ORTHO05D009172 6.6e-17 91.7 47 87.2
MCO11G048 Micromonas commoda HOM05D002468 ORTHO05D009172 5.8e-13 78.6 88 43.2
PRCOL_00003949 Prasinoderma coloniale HOM05D002468 ORTHO05D009172 1.1e-11 74.3 87 46.0
Cre02.g095122 Chlamydomonas reinhardtii HOM05D002468 ORTHO05D009172 9.6e-08 61.2 94 35.1
Actinidia27098 Actinidia chinensis HOM05D005939 ORTHO05D007412 4.8e-07 58.9 159 32.1
vmacro00653 Vaccinium macrocarpon HOM05D005939 ORTHO05D007412 6.2e-07 58.5 142 32.4
Prupe.1G203000 Prunus persica HOM05D005939 ORTHO05D007412 8.1e-07 58.2 163 30.1
VMungo1127G1625 Vigna mungo HOM05D005939 ORTHO05D007412 8.1e-07 58.2 138 32.6
Os08g0541400 Oryza sativa ssp. japonica HOM05D005939 ORTHO05D007412 1.4e-06 57.4 149 30.9
AL4G42360 Arabidopsis lyrata HOM05D005939 ORTHO05D007412 3.1e-06 56.2 137 32.1
Hma1.2p1_1220F.1_g268050 Hydrangea macrophylla HOM05D005939 ORTHO05D007412 4.0e-06 55.8 188 28.2
Migut.N03077 Erythranthe guttata HOM05D005939 ORTHO05D007412 5.3e-06 55.5 138 31.2
RcHm_v2.0_Chr4g0406301 Rosa chinensis HOM05D005939 ORTHO05D007412 5.3e-06 55.5 140 30.7
TWI38G2333 Tripterygium wilfordii HOM05D005939 ORTHO05D007412 9.0e-06 54.7 132 29.5


User provided reference genes

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