Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_06987_v3 Cicer arietinum L. HOM05D007406 ORTHO05D009434 7.1e-119 430.6 221 100.0
TPR.G13149 Trifolium pratense HOM05D007406 ORTHO05D009434 6.2e-107 391.0 219 90.0
Medtr1g017290 Medicago truncatula HOM05D007406 ORTHO05D009434 4.6e-102 374.8 222 85.6
Lj5g0009058 Lotus japonicus HOM05D007406 ORTHO05D009434 2.9e-96 355.5 221 83.3
VMungo0647G2305 Vigna mungo HOM05D007406 ORTHO05D009434 5.5e-95 351.3 221 79.6
Glyma.14G090300 Glycine max HOM05D007406 ORTHO05D009434 6.0e-94 347.8 221 78.7
Lalb_Chr14g0368031 Lupinus albus HOM05D007406 ORTHO05D009434 8.7e-93 344.0 221 79.6
Phvul.001G031500 Phaseolus vulgaris HOM05D007406 ORTHO05D009434 4.3e-92 341.7 226 78.3
arahy.Tifrunner.gnm1.ann1.GL3N7R Arachis hypogaea HOM05D007406 ORTHO05D009434 5.9e-89 331.3 221 75.6
arahy.Tifrunner.gnm1.ann1.V0H9ZK Arachis hypogaea HOM05D007406 ORTHO05D009434 9.7e-84 313.9 221 72.9
CiPaw.08G053000 Carya illinoinensis HOM05D007406 ORTHO05D009434 1.1e-82 310.5 221 72.9
TAR628G0119 Trochodendron aralioides HOM05D007406 ORTHO05D009434 2.4e-82 309.3 220 73.2
MD15G1064200 Malus domestica HOM05D007406 ORTHO05D009434 1.2e-81 307.0 217 73.3
Prupe.1G418200 Prunus persica HOM05D007406 ORTHO05D009434 1.0e-80 303.9 221 72.9
Cfa013727 Carpinus fangiana HOM05D007406 ORTHO05D009434 1.3e-80 303.5 218 72.9
RcHm_v2.0_Chr6g0310141 Rosa chinensis HOM05D007406 ORTHO05D009434 6.5e-80 301.2 221 71.9
FAN24G2334 Fragaria x ananassa HOM05D007406 ORTHO05D009434 8.5e-80 300.8 221 70.6
CANSAT25G0188 Cannabis sativa HOM05D007406 ORTHO05D009434 4.2e-79 298.5 219 68.9
Manes.18G050400 Manihot esculenta HOM05D007406 ORTHO05D009434 5.5e-79 298.1 220 72.3
Thecc.08G083300 Theobroma cacao HOM05D007406 ORTHO05D009434 5.5e-79 298.1 220 71.4
Ciclev10002365m.g Citrus clementina HOM05D007406 ORTHO05D009434 9.4e-79 297.4 220 70.5
TWI36G1291 Tripterygium wilfordii HOM05D007406 ORTHO05D009434 9.4e-79 297.4 220 70.9
Cpa.g.sc160.29 Carica papaya HOM05D007406 ORTHO05D009434 1.6e-78 296.6 219 69.4
DCAR_020070 Daucus carota HOM05D007406 ORTHO05D009434 2.1e-78 296.2 220 69.1
Prupe.6G207800 Prunus persica HOM05D007406 ORTHO05D009434 2.1e-78 296.2 210 73.3
FvH4_2g32510 Fragaria vesca HOM05D007406 ORTHO05D009434 2.7e-78 295.8 221 69.7
MELO3C016844.2 Cucumis melo HOM05D007406 ORTHO05D009434 6.1e-78 294.7 221 69.7
Atru.chr13.879 Acer truncatum HOM05D007406 ORTHO05D009434 1.4e-77 293.5 219 70.3
Cc10_g07740 Coffea canephora HOM05D007406 ORTHO05D009434 1.4e-77 293.5 219 68.9
Duzib041G0608 Durio zibethinus HOM05D007406 ORTHO05D009434 3.9e-77 292.0 220 71.4
ClCG05G017610 Citrullus lanatus HOM05D007406 ORTHO05D009434 5.1e-77 291.6 221 69.7
Gohir.A02G079900 Gossypium hirsutum HOM05D007406 ORTHO05D009434 6.7e-77 291.2 223 71.7
Potri.002G114400 Populus trichocarpa HOM05D007406 ORTHO05D009434 8.8e-77 290.8 221 71.0
vmacro21408 Vaccinium macrocarpon HOM05D007406 ORTHO05D009434 4.3e-76 288.5 243 63.4
FAN27G1006 Fragaria x ananassa HOM05D007406 ORTHO05D009434 5.7e-76 288.1 220 67.3
Solyc04g077450.3 Solanum lycopersicum HOM05D007406 ORTHO05D009434 2.8e-75 285.8 218 68.8
Gohir.D02G087800 Gossypium hirsutum HOM05D007406 ORTHO05D009434 3.7e-75 285.4 220 71.4
CAN.G416.4 Capsicum annuum HOM05D007406 ORTHO05D009434 4.8e-75 285.0 218 68.3
Gorai.005G098400 Gossypium raimondii HOM05D007406 ORTHO05D009434 4.8e-75 285.0 220 71.4
Haze_22374 Corylus avellana HOM05D007406 ORTHO05D009434 6.3e-75 284.6 246 63.8
Sopen04g031040 Solanum pennellii HOM05D007406 ORTHO05D009434 8.2e-75 284.3 218 68.8
Hma1.2p1_1926F.1_g307730 Hydrangea macrophylla HOM05D007406 ORTHO05D009434 1.8e-74 283.1 220 69.1
Sed0009876 Sechium edule HOM05D007406 ORTHO05D009434 2.4e-74 282.7 222 68.0
HanXRQChr08g0226371 Helianthus annuus HOM05D007406 ORTHO05D009434 3.1e-74 282.3 219 67.6
Actinidia10229 Actinidia chinensis HOM05D007406 ORTHO05D009434 4.1e-74 282.0 198 72.2
Migut.N02801 Erythranthe guttata HOM05D007406 ORTHO05D009434 4.1e-74 282.0 219 67.1
Nn6g34540 Nelumbo nucifera HOM05D007406 ORTHO05D009434 5.3e-74 281.6 220 65.0
Carub.0003s1158 Capsella rubella HOM05D007406 ORTHO05D009434 2.6e-73 279.3 218 66.1
THA.LOC104799833 Tarenaya hassleriana HOM05D007406 ORTHO05D009434 7.7e-73 277.7 219 66.7
AUR62034986 Chenopodium quinoa HOM05D007406 ORTHO05D009434 1.7e-72 276.6 220 66.8
AT3G12210 Arabidopsis thaliana HOM05D007406 ORTHO05D009434 6.5e-72 274.6 218 65.1
Lsat_1_v5_gn_1_721 Lactuca sativa HOM05D007406 ORTHO05D009434 6.5e-72 274.6 206 69.9
PGR031G1333 Punica granatum HOM05D007406 ORTHO05D009434 6.5e-72 274.6 229 64.2
AL3G23880 Arabidopsis lyrata HOM05D007406 ORTHO05D009434 8.5e-72 274.2 218 65.1
PSO017G2718 Papaver somniferum HOM05D007406 ORTHO05D009434 8.5e-72 274.2 223 65.0
Thhalv10021516m.g Eutrema salsugineum HOM05D007406 ORTHO05D009434 1.1e-71 273.9 218 64.7
Aqoxy6G02928 Aquilegia oxysepala HOM05D007406 ORTHO05D009434 2.5e-71 272.7 220 66.8
Sp3g10440 Schrenkiella parvula HOM05D007406 ORTHO05D009434 3.2e-71 272.3 218 64.7
BolC5t34221H Brassica oleracea HOM05D007406 ORTHO05D009434 5.5e-71 271.6 219 63.9
BraA05t22509Z Brassica rapa HOM05D007406 ORTHO05D009434 7.2e-71 271.2 219 64.4
Hund05268 Selenicereus undatus HOM05D007406 ORTHO05D009434 7.9e-70 267.7 218 65.1
MSTRG.22203 Avicennia marina HOM05D007406 ORTHO05D009434 2.0e-68 263.1 220 63.6
Ah.05g166920 Amaranthus hybridus HOM05D007406 ORTHO05D009434 3.3e-68 262.3 220 63.2
ECA247G1434 Erigeron canadensis HOM05D007406 ORTHO05D009434 3.3e-68 262.3 220 63.2
EL10Ac1g02342 Beta vulgaris HOM05D007406 ORTHO05D009434 9.7e-68 260.8 219 63.9
SalBow2G1084 Salvia bowleyana HOM05D007406 ORTHO05D009434 1.3e-67 260.4 219 60.3
ATR0739G008 Amborella trichopoda HOM05D007406 ORTHO05D009434 2.2e-67 259.6 220 61.4
Eucgr.F02216 Eucalyptus grandis HOM05D007406 ORTHO05D009434 3.7e-67 258.8 220 63.2
Rhsim06G0065300 Rhododendron simsii HOM05D007406 ORTHO05D009434 3.7e-67 258.8 171 74.9
CsaV3_4G035340 Cucumis sativus L. HOM05D007406 ORTHO05D009434 1.8e-66 256.5 171 73.7
Aa31LG11G6470 Aethionema arabicum HOM05D007406 ORTHO05D009434 1.2e-65 253.8 216 61.1
MBI16_g35726_MAGBIO Magnolia biondii HOM05D007406 ORTHO05D009434 1.6e-65 253.4 235 59.1
CSS0019783 Camellia sinensis var. sinensis HOM05D007406 ORTHO05D009434 7.7e-65 251.1 171 73.7
Nitab4.5_0007871g0020 Nicotiana tabacum HOM05D007406 ORTHO05D009434 1.7e-64 250.0 218 63.3
PSO170G2494 Papaver somniferum HOM05D007406 ORTHO05D009434 2.9e-64 249.2 187 67.9
Sabra02G0090500 Salix brachista HOM05D000717 ORTHO05D000555 1.5e-63 246.9 171 73.1
BcaC05g29272 Brassica carinata HOM05D007406 ORTHO05D009434 1.9e-63 246.5 171 69.6
COL.COLO4_28451 Corchorus olitorius HOM05D007406 ORTHO05D009434 2.5e-63 246.1 197 65.5
SGA_v2.0_scaffold28G11843 Striga asiatica HOM05D007406 ORTHO05D009434 4.2e-63 245.4 219 60.3
Zm00001eb215640 Zea mays HOM05D007406 ORTHO05D009434 2.7e-62 242.7 216 59.3
Oeu053653.1 Olea europaea HOM05D007406 ORTHO05D009434 4.4e-60 235.3 174 67.2
Lj4C76T9 Lonicera japonica HOM05D007406 ORTHO05D009434 1.7e-59 233.4 159 74.2
SEGI_23576 Sequoiadendron giganteum HOM05D007406 ORTHO05D009434 3.2e-55 219.2 230 53.5
Peaxi162Scf01161g00328 Petunia axillaris HOM05D007406 ORTHO05D009434 6.8e-53 211.5 218 55.0
GSVIVG01009288001 Vitis vinifera HOM05D007406 ORTHO05D009434 2.6e-52 209.5 155 74.2
CARHR086780 Cardamine hirsuta HOM05D007406 ORTHO05D009434 5.7e-52 208.4 142 71.1
Pp3c10_2700 Physcomitrium patens HOM05D007406 ORTHO05D009434 4.8e-51 205.3 228 52.2
AUR62039350 Chenopodium quinoa HOM05D007406 ORTHO05D009434 5.5e-47 191.8 154 67.5
CDE04G3630 Ceratophyllum demersum HOM05D007406 ORTHO05D009434 7.2e-47 191.4 144 64.6
Sc15g0005330 Simmondsia chinensis HOM05D007406 ORTHO05D009434 3.5e-41 172.6 140 62.1
A05p37120 Brassica napus HOM05D007406 ORTHO05D004372 2.3e-40 169.9 144 65.3
C05p55550 Brassica napus HOM05D007406 ORTHO05D004372 2.9e-40 169.5 144 64.6
Nitab4.5_0001494g0090 Nicotiana tabacum HOM05D007406 ORTHO05D009434 5.0e-40 168.7 218 46.8
Aa31sc118G30 Aethionema arabicum HOM05D007406 ORTHO05D009434 2.9e-27 126.3 95 68.4
Hma1.2p1_1926F.1_g307740 Hydrangea macrophylla HOM05D007406 ORTHO05D009434 2.5e-23 113.2 76 75.0
Hma1.2p1_2378F.1_g320925 Hydrangea macrophylla HOM05D007406 ORTHO05D009434 2.5e-23 113.2 76 75.0
Psat0s3650g0120 Pisum sativum HOM05D007406 ORTHO05D009434 2.3e-21 106.7 59 88.1
Dinv39200 Davidia involucrata HOM05D007406 ORTHO05D009434 4.9e-19 99.0 62 79.0
MCO14G094 Micromonas commoda HOM05D007406 ORTHO05D009434 5.4e-18 95.5 192 35.9
Sc15g0005340 Simmondsia chinensis HOM05D007406 ORTHO05D009434 1.9e-15 87.0 77 63.6
Os03g0728600 Oryza sativa ssp. japonica HOM05D007406 ORTHO05D009434 5.2e-13 79.0 77 44.2
Cre10.g466400 Chlamydomonas reinhardtii HOM05D007406 ORTHO05D009434 8.9e-13 78.2 153 37.3
PRCOL_00000641 Prasinoderma coloniale HOM05D007406 ORTHO05D009434 1.7e-11 73.9 143 38.5
Aa31LG6G10720 Aethionema arabicum HOM05D004815 ORTHO05D005742 6.2e-06 55.5 42 64.3


User provided reference genes

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