Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_06961_v3 Cicer arietinum L. HOM05D007093 ORTHO05D008910 4.4e-238 827.8 492 100.0
TPR.G3254 Trifolium pratense HOM05D007093 ORTHO05D008910 3.7e-184 648.7 476 83.4
Medtr7g017610 Medicago truncatula HOM05D007093 ORTHO05D008910 3.5e-182 642.1 459 85.6
Psat3g194440 Pisum sativum HOM05D007093 ORTHO05D008910 2.3e-178 629.4 457 81.4
Phvul.008G024300 Phaseolus vulgaris HOM05D007093 ORTHO05D008910 3.8e-157 558.9 441 77.3
VMungo1383G0771 Vigna mungo HOM05D007093 ORTHO05D008910 6.1e-155 551.6 448 75.9
Lj1g0021235 Lotus japonicus HOM05D007093 ORTHO05D008910 4.0e-154 548.9 434 78.6
Glyma.08G254100 Glycine max HOM05D007093 ORTHO05D008910 9.8e-145 517.7 438 75.8
Glyma.18G276600 Glycine max HOM05D007093 ORTHO05D008910 4.3e-140 502.3 438 73.1
Lalb_Chr10g0092581 Lupinus albus HOM05D007093 ORTHO05D008910 2.6e-137 493.0 442 72.9
arahy.Tifrunner.gnm1.ann1.H8YVTX Arachis hypogaea HOM05D007093 ORTHO05D008910 2.1e-134 483.4 496 65.9
arahy.Tifrunner.gnm1.ann1.T191C4 Arachis hypogaea HOM05D007093 ORTHO05D008910 1.4e-130 470.7 495 65.3
QL09p029458 Quercus lobata HOM05D007093 ORTHO05D008910 8.1e-123 444.9 457 62.4
Cfa007712 Carpinus fangiana HOM05D007093 ORTHO05D008910 7.1e-119 431.8 456 61.6
QL09p029436 Quercus lobata HOM05D007093 ORTHO05D008910 7.8e-118 428.3 457 56.5
Haze_14367 Corylus avellana HOM05D007093 ORTHO05D008910 1.0e-117 427.9 435 63.2
FAN09G1105 Fragaria x ananassa HOM05D007093 ORTHO05D008910 4.4e-113 412.5 436 62.6
FAN05G3563 Fragaria x ananassa HOM05D007093 ORTHO05D008910 1.3e-112 411.0 436 63.3
FvH4_6g46090 Fragaria vesca HOM05D007093 ORTHO05D008910 2.9e-112 409.8 436 62.6
RcHm_v2.0_Chr2g0164431 Rosa chinensis HOM05D007093 ORTHO05D008910 8.4e-112 408.3 436 62.6
MD09G1077000 Malus domestica HOM05D007093 ORTHO05D008910 1.4e-111 407.5 478 61.9
FAN02G0988 Fragaria x ananassa HOM05D007093 ORTHO05D008910 3.2e-111 406.4 436 61.9
CiPaw.04G051100 Carya illinoinensis HOM05D007093 ORTHO05D008910 4.2e-111 406.0 461 57.9
Dinv11483 Davidia involucrata HOM05D007093 ORTHO05D008910 5.4e-111 405.6 435 61.1
TAR622G0743 Trochodendron aralioides HOM05D007093 ORTHO05D008910 4.0e-106 389.4 426 62.2
Ciclev10011344m.g Citrus clementina HOM05D007093 ORTHO05D008910 7.1e-103 378.6 441 59.0
Atru.chr6.1376 Acer truncatum HOM05D007093 ORTHO05D008910 1.6e-102 377.5 428 60.7
MELO3C022059.2 Cucumis melo HOM05D007093 ORTHO05D008910 2.7e-102 376.7 466 57.1
CSS0026118 Camellia sinensis var. sinensis HOM05D007093 ORTHO05D008910 6.0e-102 375.6 492 54.1
CANSAT64G0836 Cannabis sativa HOM05D007093 ORTHO05D008910 3.0e-101 373.2 444 58.8
vmacro19123 Vaccinium macrocarpon HOM05D007093 ORTHO05D008910 3.3e-100 369.8 430 59.5
PGR042G3371 Punica granatum HOM05D007093 ORTHO05D008910 1.1e-98 364.8 435 62.3
TWI60G1187 Tripterygium wilfordii HOM05D007093 ORTHO05D008910 1.2e-97 361.3 428 56.3
SalBow1G5933 Salvia bowleyana HOM05D007093 ORTHO05D008910 3.4e-97 359.8 441 57.8
PSO017G2846 Papaver somniferum HOM05D007093 ORTHO05D008910 5.8e-97 359.0 457 56.9
Rhsim10G0045200 Rhododendron simsii HOM05D007093 ORTHO05D008910 2.2e-96 357.1 443 57.3
Potri.017G090500 Populus trichocarpa HOM05D007093 ORTHO05D008910 2.9e-96 356.7 431 59.6
Gorai.006G011900 Gossypium raimondii HOM05D007093 ORTHO05D008910 1.1e-95 354.8 450 58.9
PSO478G5205 Papaver somniferum HOM05D007093 ORTHO05D008910 1.4e-95 354.4 457 56.7
Gohir.D09G010300 Gossypium hirsutum HOM05D007093 ORTHO05D008910 9.3e-95 351.7 450 57.6
Manes.02G051500 Manihot esculenta HOM05D007093 ORTHO05D008910 9.3e-95 351.7 462 57.4
Cpa.g.sc14.149 Carica papaya HOM05D007093 ORTHO05D008910 1.6e-94 350.9 465 56.1
Thhalv10003982m.g Eutrema salsugineum HOM05D007093 ORTHO05D008910 2.7e-94 350.1 478 54.2
Gohir.A09G011300 Gossypium hirsutum HOM05D007093 ORTHO05D008910 4.6e-94 349.4 473 55.6
CARHR153970 Cardamine hirsuta HOM05D007093 ORTHO05D008910 1.0e-93 348.2 467 55.7
Prupe.3G247100 Prunus persica HOM05D007093 ORTHO05D008910 1.1e-92 344.7 459 58.4
Carub.0005s0800 Capsella rubella HOM05D007093 ORTHO05D008910 1.3e-91 341.3 448 54.7
Sp2g17890 Schrenkiella parvula HOM05D007093 ORTHO05D008910 2.1e-91 340.5 428 56.8
Sabra17G0079700 Salix brachista HOM05D007093 ORTHO05D008910 1.4e-90 337.8 390 61.8
AT3G29290 Arabidopsis thaliana HOM05D007093 ORTHO05D008910 2.4e-90 337.0 457 56.0
Nn4g23352 Nelumbo nucifera HOM05D007093 ORTHO05D008910 2.4e-90 337.0 384 62.0
AL5G19290 Arabidopsis lyrata HOM05D007093 ORTHO05D008910 5.3e-90 335.9 479 52.2
Peaxi162Scf00166g00640 Petunia axillaris HOM05D007093 ORTHO05D008910 1.7e-88 330.9 478 53.6
Sed0021178 Sechium edule HOM05D007093 ORTHO05D008910 1.7e-88 330.9 458 55.2
MSTRG.3018 Avicennia marina HOM05D007093 ORTHO05D008910 2.9e-88 330.1 433 56.1
CAN.G206.202 Capsicum annuum HOM05D007093 ORTHO05D008910 5.0e-88 329.3 440 55.9
AUR62042568 Chenopodium quinoa HOM05D007093 ORTHO05D008910 6.5e-88 328.9 456 51.8
ClCG11G005040 Citrullus lanatus HOM05D007093 ORTHO05D008910 6.5e-88 328.9 466 52.6
BcaB07g30086 Brassica carinata HOM05D007093 ORTHO05D008910 1.1e-87 328.2 428 55.8
Cc07_g04020 Coffea canephora HOM05D007093 ORTHO05D008910 1.4e-87 327.8 480 50.4
Lj4A116G82 Lonicera japonica HOM05D007093 ORTHO05D008910 2.1e-86 323.9 370 63.5
Zm00001eb008430 Zea mays HOM05D007093 ORTHO05D008910 1.3e-85 321.2 428 54.2
Nitab4.5_0000565g0100 Nicotiana tabacum HOM05D007093 ORTHO05D008910 2.3e-85 320.5 433 56.6
Eucgr.J01427 Eucalyptus grandis HOM05D007093 ORTHO05D008910 3.0e-85 320.1 396 60.4
AUR62018158 Chenopodium quinoa HOM05D007093 ORTHO05D008910 1.9e-84 317.4 456 50.7
Sopen02g033330 Solanum pennellii HOM05D007093 ORTHO05D008910 4.3e-84 316.2 433 56.4
DCAR_005548 Daucus carota HOM05D007093 ORTHO05D008910 1.6e-83 314.3 390 56.9
Sc10g0003260 Simmondsia chinensis HOM05D007093 ORTHO05D008910 6.9e-82 308.9 466 50.6
Oeu000638.1 Olea europaea HOM05D007093 ORTHO05D008910 1.2e-81 308.1 445 56.2
SGA_v2.0_scaffold52G19185 Striga asiatica HOM05D007093 ORTHO05D008910 7.7e-81 305.4 433 54.3
Actinidia07826 Actinidia chinensis HOM05D007093 ORTHO05D008910 1.0e-77 295.0 422 54.0
PGSC0003DMG400001354 Solanum tuberosum HOM05D007093 ORTHO05D008910 2.2e-75 287.3 433 54.0
Ah.10g031960 Amaranthus hybridus HOM05D007093 ORTHO05D008910 4.8e-75 286.2 428 51.9
Aa31LG10G7310 Aethionema arabicum HOM05D007093 ORTHO05D006741 1.1e-74 285.0 419 55.1
Nitab4.5_0008213g0020 Nicotiana tabacum HOM05D007093 ORTHO05D008910 1.4e-74 284.6 433 54.0
Migut.H00649 Erythranthe guttata HOM05D007093 ORTHO05D008910 5.3e-74 282.7 434 50.9
Solyc02g088600.4 Solanum lycopersicum HOM05D007093 ORTHO05D008910 1.2e-70 271.6 483 48.7
unitig_899.g15158 Utricularia gibba HOM05D007093 ORTHO05D008910 1.2e-70 271.6 434 36.4
BcaC06g33684 Brassica carinata HOM05D007093 ORTHO05D008910 1.0e-69 268.5 429 51.7
GSVIVG01011494001 Vitis vinifera HOM05D007093 ORTHO05D008910 5.1e-69 266.2 428 53.7
C02p55490 Brassica napus HOM05D007093 ORTHO05D008910 6.7e-69 265.8 378 40.2
BolC2t11605H Brassica oleracea HOM05D007093 ORTHO05D008910 6.7e-69 265.8 378 40.2
C07p38180 Brassica napus HOM05D007093 ORTHO05D008910 1.1e-68 265.0 429 51.5
Lsat_1_v5_gn_2_87781 Lactuca sativa HOM05D007093 ORTHO05D008910 1.5e-68 264.6 464 47.4
ECA238G1523 Erigeron canadensis HOM05D007093 ORTHO05D008910 5.7e-68 262.7 439 48.3
COL.COLO4_21381 Corchorus olitorius HOM05D007093 ORTHO05D008910 2.2e-67 260.8 402 54.0
Duzib147G1133 Durio zibethinus HOM05D007093 ORTHO05D008910 2.2e-67 260.8 457 50.8
EL10Ac2g03091 Beta vulgaris HOM05D007093 ORTHO05D008910 1.8e-66 257.7 428 50.0
BolC7t44340H Brassica oleracea HOM05D007093 ORTHO05D008910 1.2e-65 255.0 429 48.5
SEGI_28807 Sequoiadendron giganteum HOM05D007093 ORTHO05D008910 2.0e-65 254.2 391 52.7
ATR0064G018 Amborella trichopoda HOM05D007093 ORTHO05D008910 5.9e-65 252.7 434 51.2
Thecc.04G091300 Theobroma cacao HOM05D007093 ORTHO05D008910 4.2e-63 246.5 457 49.5
HanXRQChr07g0199471 Helianthus annuus HOM05D007093 ORTHO05D008910 1.3e-59 235.0 409 48.9
CsaV3_5G038790 Cucumis sativus L. HOM05D007093 ORTHO05D008910 5.9e-57 226.1 422 50.9
A06p39990 Brassica napus HOM05D007093 ORTHO05D008910 8.3e-51 205.7 429 45.5
BraA06t26914Z Brassica rapa HOM05D007093 ORTHO05D008910 8.3e-51 205.7 429 45.5
Os03g0211600 Oryza sativa ssp. japonica HOM05D007093 ORTHO05D008910 5.9e-49 199.5 197 49.7
Zm00001eb408510 Zea mays HOM05D007093 ORTHO05D008910 1.3e-48 198.4 200 48.5
CDE10G0932 Ceratophyllum demersum HOM05D007093 ORTHO05D008910 1.1e-47 195.3 189 49.2
THA.LOC104805501 Tarenaya hassleriana HOM05D007093 ORTHO05D008910 2.1e-46 191.0 429 45.0
C02p55430 Brassica napus HOM05D007093 ORTHO05D008910 1.1e-39 168.7 346 32.7
BolC2t11599H Brassica oleracea HOM05D007093 ORTHO05D008910 1.1e-39 168.7 346 32.7
RcHm_v2.0_Chr2g0164471 Rosa chinensis HOM05D007093 ORTHO05D008910 1.2e-30 138.7 113 60.2
BcaC03g17570 Brassica carinata HOM05D007093 ORTHO05D008910 7.0e-26 122.9 304 29.3
SMO364G0448 Selaginella moellendorffii HOM05D007093 ORTHO05D008910 3.2e-10 70.9 146 30.8
AagrBONN_evm.TU.Sc2ySwM_368.547 Anthoceros agrestis HOM05D007093 ORTHO05D008910 9.2e-10 69.3 160 26.9
ECA234G0114 Erigeron canadensis HOM05D000001 ORTHO05D000003 3.0e-08 64.3 246 23.2
TAR628G0906 Trochodendron aralioides HOM05D000001 ORTHO05D009433 8.6e-08 62.8 234 23.5
COL.COLO4_07473 Corchorus olitorius HOM05D003039 ORTHO05D008410 2.5e-07 61.2 182 26.9
Sabra04G0061000 Salix brachista HOM05D007291 ORTHO05D009038 4.3e-07 60.5 110 27.3
TAR560G0001 Trochodendron aralioides HOM05D000001 ORTHO05D013582 4.3e-07 60.5 457 17.1
Eucgr.K03209 Eucalyptus grandis HOM05D000855 ORTHO05D008530 5.6e-07 60.1 165 24.8
ClCG10G020580 Citrullus lanatus HOM05D001673 ORTHO05D002312 7.3e-07 59.7 146 27.4
Sed0017496 Sechium edule HOM05D000855 ORTHO05D008530 7.3e-07 59.7 146 26.7
TAR374G1476 Trochodendron aralioides HOM05D000001 ORTHO05D000003 7.3e-07 59.7 157 25.5
CiPaw.02G077000 Carya illinoinensis HOM05D000855 ORTHO05D008530 9.6e-07 59.3 147 29.9
TAR623G0872 Trochodendron aralioides HOM05D000001 ORTHO05D013582 9.6e-07 59.3 459 17.9
Lsat_1_v5_gn_9_88941 Lactuca sativa HOM05D003039 ORTHO05D008410 1.2e-06 58.9 203 25.1
Cpa.g.sc62.38 Carica papaya HOM05D006858 ORTHO05D008767 1.6e-06 58.5 150 26.0
HPP92_003991 Vanilla planifolia HOM05D000001 ORTHO05D000003 1.6e-06 58.5 148 29.7
BcaC05g24974 Brassica carinata HOM05D007322 ORTHO05D009029 2.1e-06 58.2 139 27.3
CDE04G1659 Ceratophyllum demersum HOM05D008234 ORTHO05D010422 2.1e-06 58.2 139 25.9
A10p10300 Brassica napus HOM05D000001 ORTHO05D000003 2.8e-06 57.8 174 27.6
BraA10t43110Z Brassica rapa HOM05D000001 ORTHO05D000003 2.8e-06 57.8 174 27.6
ATR1127G166 Amborella trichopoda HOM05D007358 ORTHO05D009117 3.6e-06 57.4 126 27.8
Nn5g30935 Nelumbo nucifera HOM05D005833 ORTHO05D008135 3.6e-06 57.4 141 24.8
Sp1g09630 Schrenkiella parvula HOM05D007322 ORTHO05D009029 3.6e-06 57.4 139 27.3
Duzib084G0478 Durio zibethinus HOM05D000001 ORTHO05D000003 4.7e-06 57.0 119 29.4
Potri.017G126600 Populus trichocarpa HOM05D002007 ORTHO05D000355 4.7e-06 57.0 185 23.8
AUR62012554 Chenopodium quinoa HOM05D007291 ORTHO05D009038 6.2e-06 56.6 174 21.3
Glyma.02G077900 Glycine max HOM05D000001 ORTHO05D010419 6.2e-06 56.6 163 27.0
Prupe.2G028200 Prunus persica HOM05D003039 ORTHO05D008410 6.2e-06 56.6 201 26.4
Actinidia15488 Actinidia chinensis HOM05D005833 ORTHO05D008135 8.1e-06 56.2 140 25.0
Ca_11448_v3 Cicer arietinum L. HOM05D000855 ORTHO05D008530 8.1e-06 56.2 146 26.7
Lj1g0013636 Lotus japonicus HOM05D000001 ORTHO05D010419 8.1e-06 56.2 167 26.9
Psat7g225800 Pisum sativum HOM05D000001 ORTHO05D000003 8.1e-06 56.2 167 24.0


User provided reference genes

Program Settings