Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_06931_v3 Cicer arietinum L. HOM05D004002 ORTHO05D004668 0.0e+00 1928.7 981 100.0
Ca_30460_v3 Cicer arietinum L. HOM05D004002 ORTHO05D004668 0.0e+00 1928.7 981 100.0
Medtr4g114930 Medicago truncatula HOM05D004002 ORTHO05D004668 0.0e+00 1780.0 999 91.8
TPR.G26484 Trifolium pratense HOM05D004002 ORTHO05D004668 0.0e+00 1723.8 999 89.4
Lj4g0004437 Lotus japonicus HOM05D004002 ORTHO05D004668 0.0e+00 1714.9 998 88.6
Glyma.13G158400 Glycine max HOM05D004002 ORTHO05D004668 0.0e+00 1711.0 996 88.6
Lalb_Chr12g0198051 Lupinus albus HOM05D004002 ORTHO05D004668 0.0e+00 1625.9 999 83.5
Lalb_Chr13g0301701 Lupinus albus HOM05D004002 ORTHO05D004668 0.0e+00 1624.0 1011 83.1
arahy.Tifrunner.gnm1.ann1.S50ZLM Arachis hypogaea HOM05D004002 ORTHO05D004668 0.0e+00 1600.9 991 83.2
arahy.Tifrunner.gnm1.ann1.R22NLQ Arachis hypogaea HOM05D004002 ORTHO05D004668 0.0e+00 1590.9 986 82.6
RcHm_v2.0_Chr2g0087941 Rosa chinensis HOM05D004002 ORTHO05D004668 0.0e+00 1493.0 1006 76.7
CiPaw.03G246900 Carya illinoinensis HOM05D004002 ORTHO05D004668 0.0e+00 1491.1 1009 76.1
CANSAT11G1469 Cannabis sativa HOM05D004002 ORTHO05D004668 0.0e+00 1490.7 1011 76.0
Cfa003405 Carpinus fangiana HOM05D004002 ORTHO05D004668 0.0e+00 1489.6 1010 76.3
Manes.14G114600 Manihot esculenta HOM05D004002 ORTHO05D004668 0.0e+00 1475.3 1010 75.9
Prupe.7G246700 Prunus persica HOM05D004002 ORTHO05D004668 0.0e+00 1470.7 1002 75.9
Potri.018G128400 Populus trichocarpa HOM05D004002 ORTHO05D004668 0.0e+00 1465.7 1008 75.4
FvH4_1g02820 Fragaria vesca HOM05D004002 ORTHO05D004668 0.0e+00 1463.7 1007 75.1
FAN28G1420 Fragaria x ananassa HOM05D004002 ORTHO05D004668 0.0e+00 1463.7 1007 75.1
Atru.chr7.1118 Acer truncatum HOM05D004002 ORTHO05D004668 0.0e+00 1462.2 1010 75.0
Thecc.09G129800 Theobroma cacao HOM05D004002 ORTHO05D004668 0.0e+00 1461.4 1009 75.4
MD02G1028100 Malus domestica HOM05D004002 ORTHO05D004668 0.0e+00 1458.4 1011 74.6
Actinidia21966 Actinidia chinensis HOM05D004002 ORTHO05D004668 0.0e+00 1456.0 1011 75.7
Eucgr.C04259 Eucalyptus grandis HOM05D004002 ORTHO05D004668 0.0e+00 1452.2 1009 74.7
TWI32G0682 Tripterygium wilfordii HOM05D004002 ORTHO05D004668 0.0e+00 1451.0 1008 74.6
Phvul.003G167101 Phaseolus vulgaris HOM05D004002 ORTHO05D004668 0.0e+00 1450.6 847 88.7
Rhsim01G0066800 Rhododendron simsii HOM05D004002 ORTHO05D004668 0.0e+00 1449.9 1012 75.1
GSVIVG01015557001 Vitis vinifera HOM05D004002 ORTHO05D004668 0.0e+00 1444.1 1005 74.5
Duzib168G0398 Durio zibethinus HOM05D004002 ORTHO05D004668 0.0e+00 1443.3 1008 74.2
FAN19G2815 Fragaria x ananassa HOM05D004002 ORTHO05D004668 0.0e+00 1440.6 1036 72.4
VMungo1215G3423 Vigna mungo HOM05D004002 ORTHO05D004668 0.0e+00 1440.2 845 87.2
FAN23G2019 Fragaria x ananassa HOM05D004002 ORTHO05D004668 0.0e+00 1431.8 1042 71.6
MD15G1169800 Malus domestica HOM05D004002 ORTHO05D004668 0.0e+00 1427.5 1006 73.2
TAR636G2372 Trochodendron aralioides HOM05D004002 ORTHO05D004668 0.0e+00 1425.6 1015 73.5
Sabra18G0109200 Salix brachista HOM05D004002 ORTHO05D004668 0.0e+00 1425.2 1043 72.4
Ciclev10007259m.g Citrus clementina HOM05D004002 ORTHO05D004668 0.0e+00 1424.1 1010 73.7
Duzib187G1937 Durio zibethinus HOM05D004002 ORTHO05D004668 0.0e+00 1420.2 1014 73.7
COL.COLO4_35123 Corchorus olitorius HOM05D004002 ORTHO05D004668 0.0e+00 1417.5 1001 74.0
vmacro20578 Vaccinium macrocarpon HOM05D004002 ORTHO05D004668 0.0e+00 1414.8 1079 70.0
ClCG06G011370 Citrullus lanatus HOM05D004002 ORTHO05D004668 0.0e+00 1412.9 1003 73.7
FAN23G1361 Fragaria x ananassa HOM05D004002 ORTHO05D004668 0.0e+00 1406.0 1007 72.5
Nitab4.5_0001776g0030 Nicotiana tabacum HOM05D004002 ORTHO05D004668 0.0e+00 1403.3 1006 73.2
QL02p089511 Quercus lobata HOM05D004002 ORTHO05D004668 0.0e+00 1402.1 1218 63.1
Gohir.A07G036800 Gossypium hirsutum HOM05D004002 ORTHO05D004668 0.0e+00 1396.7 1011 71.9
MELO3C010320.2 Cucumis melo HOM05D004002 ORTHO05D004668 0.0e+00 1396.3 1010 73.0
Sed0028143 Sechium edule HOM05D004002 ORTHO05D004668 0.0e+00 1393.6 1002 72.8
Gorai.001G043400 Gossypium raimondii HOM05D004002 ORTHO05D004668 0.0e+00 1387.9 1013 71.8
Cc06_g08210 Coffea canephora HOM05D004002 ORTHO05D004668 0.0e+00 1386.7 1010 72.4
Gohir.D07G040800 Gossypium hirsutum HOM05D004002 ORTHO05D004668 0.0e+00 1385.9 1013 71.8
FAN26G1964 Fragaria x ananassa HOM05D004002 ORTHO05D004668 0.0e+00 1384.8 1036 70.0
Sopen07g003960 Solanum pennellii HOM05D004002 ORTHO05D004668 0.0e+00 1382.1 1001 72.2
Gorai.004G276600 Gossypium raimondii HOM05D004002 ORTHO05D004668 0.0e+00 1376.3 1015 72.1
CAN.G138.14 Capsicum annuum HOM05D004002 ORTHO05D004668 0.0e+00 1371.7 994 72.2
Gohir.A08G238400 Gossypium hirsutum HOM05D004002 ORTHO05D004668 0.0e+00 1369.8 1015 72.0
DCAR_014896 Daucus carota HOM05D004002 ORTHO05D004668 0.0e+00 1369.4 990 71.8
Gohir.D08G259100 Gossypium hirsutum HOM05D004002 ORTHO05D004668 0.0e+00 1366.3 1024 71.3
AUR62013328 Chenopodium quinoa HOM05D004002 ORTHO05D004668 0.0e+00 1362.1 1002 70.8
AUR62011160 Chenopodium quinoa HOM05D004002 ORTHO05D004668 0.0e+00 1360.1 1002 70.8
Sc18g0000460 Simmondsia chinensis HOM05D004002 ORTHO05D004668 0.0e+00 1360.1 1016 70.5
Sed0021658 Sechium edule HOM05D004002 ORTHO05D004668 0.0e+00 1357.4 1001 71.6
HanXRQChr09g0241521 Helianthus annuus HOM05D004002 ORTHO05D004668 0.0e+00 1352.4 1000 70.0
CsaV3_1G030400 Cucumis sativus L. HOM05D004002 ORTHO05D004668 0.0e+00 1343.2 1011 70.4
THA.LOC104811026 Tarenaya hassleriana HOM05D004002 ORTHO05D004668 0.0e+00 1339.3 1004 70.0
Aqoxy7G02288 Aquilegia oxysepala HOM05D004002 ORTHO05D004668 0.0e+00 1338.2 1013 69.3
AL5G20770 Arabidopsis lyrata HOM05D004002 ORTHO05D004668 0.0e+00 1331.2 997 70.1
Lsat_1_v5_gn_7_43900 Lactuca sativa HOM05D004002 ORTHO05D004668 0.0e+00 1330.9 1003 68.4
BcaC08g43677 Brassica carinata HOM05D004002 ORTHO05D004668 0.0e+00 1326.6 991 69.5
SalBow1G7082 Salvia bowleyana HOM05D004002 ORTHO05D004668 0.0e+00 1324.7 1005 70.0
Sp1g41730 Schrenkiella parvula HOM05D004002 ORTHO05D004668 0.0e+00 1323.9 999 69.6
BcaB07g33169 Brassica carinata HOM05D004002 ORTHO05D004668 0.0e+00 1322.4 991 69.2
AT3G33530 Arabidopsis thaliana HOM05D004002 ORTHO05D004668 0.0e+00 1321.2 997 69.6
Ah.09g225140 Amaranthus hybridus HOM05D004002 ORTHO05D004668 0.0e+00 1320.1 1002 69.4
MBI04_g29332_MAGBIO Magnolia biondii HOM05D004002 ORTHO05D004668 0.0e+00 1319.3 1016 69.2
C06p10960 Brassica napus HOM05D004002 ORTHO05D004668 0.0e+00 1318.9 992 69.4
Carub.0016s0010 Capsella rubella HOM05D004002 ORTHO05D004668 0.0e+00 1318.5 995 69.6
Hund26527 Selenicereus undatus HOM05D004002 ORTHO05D004668 0.0e+00 1317.0 1002 68.8
MSTRG.26413 Avicennia marina HOM05D004002 ORTHO05D004668 0.0e+00 1314.3 1012 69.4
BraSC56t46385Z Brassica rapa HOM05D004002 ORTHO05D004668 0.0e+00 1312.0 1009 68.3
Lsat_1_v5_gn_8_62220 Lactuca sativa HOM05D004002 ORTHO05D004668 0.0e+00 1310.4 988 68.4
BolC6t36178H Brassica oleracea HOM05D004002 ORTHO05D004668 0.0e+00 1309.7 1013 68.0
ECA236G2336 Erigeron canadensis HOM05D004002 ORTHO05D004668 0.0e+00 1306.2 994 67.7
Dinv41488 Davidia involucrata HOM05D004002 ORTHO05D004668 0.0e+00 1304.7 915 74.6
HanXRQChr05g0143441 Helianthus annuus HOM05D004002 ORTHO05D004668 0.0e+00 1303.9 988 67.5
Nn2g12080 Nelumbo nucifera HOM05D004002 ORTHO05D004668 0.0e+00 1288.9 1011 67.7
SGA_v2.0_scaffold109G31044 Striga asiatica HOM05D004002 ORTHO05D004668 0.0e+00 1282.7 1151 61.9
PSO170G6007 Papaver somniferum HOM05D004002 ORTHO05D004668 0.0e+00 1276.9 1020 66.9
Lj7C426G10 Lonicera japonica HOM05D004002 ORTHO05D004668 0.0e+00 1274.2 991 69.8
PSO017G4586 Papaver somniferum HOM05D004002 ORTHO05D004668 0.0e+00 1271.5 1018 66.9
CDE03G0124 Ceratophyllum demersum HOM05D004002 ORTHO05D004668 0.0e+00 1266.5 1016 65.8
THA.LOC104808973 Tarenaya hassleriana HOM05D004002 ORTHO05D004668 0.0e+00 1251.5 994 66.3
Dinv36495 Davidia involucrata HOM05D004002 ORTHO05D004668 0.0e+00 1247.3 1006 67.5
EL10Ac8g18695 Beta vulgaris HOM05D004002 ORTHO05D004668 0.0e+00 1238.0 1000 66.7
Peaxi162Scf00891g00220 Petunia axillaris HOM05D004002 ORTHO05D004668 0.0e+00 1232.2 994 67.5
ATR1120G180 Amborella trichopoda HOM05D004002 ORTHO05D004668 0.0e+00 1224.2 1004 64.7
DCAR_010315 Daucus carota HOM05D004002 ORTHO05D004668 0.0e+00 1222.6 1005 63.7
Aa31LG4G12760 Aethionema arabicum HOM05D004002 ORTHO05D004668 0.0e+00 1221.8 1059 62.0
ECA240G2868 Erigeron canadensis HOM05D004002 ORTHO05D004668 0.0e+00 1213.0 829 74.8
AL4G19600 Arabidopsis lyrata HOM05D004002 ORTHO05D004668 0.0e+00 1203.0 989 63.7
Thhalv10011188m.g Eutrema salsugineum HOM05D004002 ORTHO05D004668 0.0e+00 1202.6 913 68.7
Carub.0004s0687 Capsella rubella HOM05D004002 ORTHO05D004668 0.0e+00 1201.0 990 63.6
HPP92_024596 Vanilla planifolia HOM05D004002 ORTHO05D004668 0.0e+00 1194.5 1001 63.4
AT2G26610 Arabidopsis thaliana HOM05D004002 ORTHO05D004668 0.0e+00 1180.2 987 62.7
Zm00001eb231770 Zea mays HOM05D004002 ORTHO05D004668 0.0e+00 1171.8 987 63.7
Aa31LG5G9160 Aethionema arabicum HOM05D004002 ORTHO05D004668 0.0e+00 1128.2 1008 60.9
Sp4g09400 Schrenkiella parvula HOM05D004002 ORTHO05D004668 0.0e+00 1112.8 987 60.0
BcaC01g04911 Brassica carinata HOM05D004002 ORTHO05D004668 0.0e+00 1097.4 986 59.7
A03p26850 Brassica napus HOM05D004002 ORTHO05D004668 0.0e+00 1097.4 983 59.6
BraA03t11897Z Brassica rapa HOM05D004002 ORTHO05D004668 0.0e+00 1097.4 983 59.6
C03p32190 Brassica napus HOM05D004002 ORTHO05D004668 0.0e+00 1093.6 985 59.4
BolC3t15561H Brassica oleracea HOM05D004002 ORTHO05D004668 0.0e+00 1088.9 986 59.4
BcaB01g03030 Brassica carinata HOM05D004002 ORTHO05D004668 0.0e+00 1086.2 978 58.9
unitig_748.g7159 Utricularia gibba HOM05D004002 ORTHO05D004668 1.9e-309 1065.8 1050 57.4
Nitab4.5_0000028g0120 Nicotiana tabacum HOM05D004002 ORTHO05D004668 2.9e-305 1052.0 763 71.0
Cpa.g.sc46.23 Carica papaya HOM05D004002 ORTHO05D004668 2.5e-301 1038.9 1105 54.0
SEGI_17541 Sequoiadendron giganteum HOM05D004002 ORTHO05D004668 1.6e-300 1036.2 1035 55.4
Os02g0137000 Oryza sativa ssp. japonica HOM05D004002 ORTHO05D004668 4.5e-290 1001.5 733 71.4
Psat4g037880 Pisum sativum HOM05D004002 ORTHO05D004668 5.7e-285 984.6 575 88.7
Nn8g39500 Nelumbo nucifera HOM05D004002 ORTHO05D004668 1.9e-277 959.5 632 76.9
AagrBONN_evm.TU.Sc2ySwM_368.2316 Anthoceros agrestis HOM05D004002 ORTHO05D004668 3.7e-268 928.7 1053 51.5
CARHR153610 Cardamine hirsuta HOM05D004002 ORTHO05D004668 4.7e-255 885.2 614 72.8
Pp3c7_2590 Physcomitrium patens HOM05D004002 ORTHO05D004668 5.2e-254 881.7 1045 49.6
Mapoly0041s0113 Marchantia polymorpha HOM05D004002 ORTHO05D004668 9.7e-253 877.5 1051 49.7
Pp3c11_23650 Physcomitrium patens HOM05D004002 ORTHO05D004668 2.0e-250 869.8 1025 49.4
SMO347G0439 Selaginella moellendorffii HOM05D004002 ORTHO05D004668 3.4e-245 852.4 999 50.7
Haze_25541 Corylus avellana HOM05D004002 ORTHO05D004668 2.3e-222 776.5 925 51.6
Psat4g037920 Pisum sativum HOM05D004002 ORTHO05D004668 2.8e-215 753.1 419 92.6
Migut.K00437 Erythranthe guttata HOM05D004002 ORTHO05D004668 8.9e-214 748.0 542 72.1
CBR_g41081 Chara braunii HOM05D004002 ORTHO05D004668 6.8e-198 695.3 916 45.9
Haze_25536 Corylus avellana HOM05D004002 ORTHO05D004668 2.7e-178 630.2 421 77.7
CsaV3_UNG023150 Cucumis sativus L. HOM05D004002 ORTHO05D004668 6.0e-178 629.0 567 62.4
SHI03370 Sapria himalayana HOM05D004002 ORTHO05D000023 5.1e-177 625.9 548 60.9
Migut.K00436 Erythranthe guttata HOM05D004002 ORTHO05D004668 3.5e-162 576.6 419 72.8
Oeu040328.1 Olea europaea HOM05D004002 ORTHO05D004668 6.9e-150 535.8 362 72.4
CsaV3_UNG026150 Cucumis sativus L. HOM05D004002 ORTHO05D004668 1.4e-113 415.2 398 60.3
Hund09270 Selenicereus undatus HOM05D004002 ORTHO05D004668 1.0e-100 372.5 260 73.1
Haze_25542 Corylus avellana HOM05D004002 ORTHO05D004668 5.8e-96 356.7 318 61.6
Solyc07g008075.1 Solanum lycopersicum HOM05D004002 ORTHO05D004668 4.7e-90 337.0 222 82.0
CDE04G2506 Ceratophyllum demersum HOM05D004002 ORTHO05D004668 6.9e-65 253.4 282 54.3
SHI03368 Sapria himalayana HOM05D004002 ORTHO05D004668 5.1e-60 237.3 212 63.7
VMungo1215G0854 Vigna mungo HOM05D004002 ORTHO05D004668 5.7e-51 207.2 134 77.6
TPR.G35745 Trifolium pratense HOM05D004002 ORTHO05D004668 4.2e-46 191.0 137 74.5
Lsat_1_v5_gn_0_43201 Lactuca sativa HOM05D004002 ORTHO05D004668 9.1e-41 173.3 115 78.3
Oeu040327.1 Olea europaea HOM05D004002 ORTHO05D004668 1.5e-40 172.6 118 75.4
Lsat_1_v5_gn_8_63461 Lactuca sativa HOM05D004002 ORTHO05D004668 1.8e-36 159.1 204 49.0
BcaB07g33170 Brassica carinata HOM05D004002 ORTHO05D002109 9.7e-35 153.3 232 43.5
SHI03369 Sapria himalayana HOM05D004002 ORTHO05D004668 9.4e-30 136.7 139 52.5
Oeu012614.1 Olea europaea HOM05D004002 ORTHO05D004668 9.7e-27 126.7 119 57.1
Medtr8g073750 Medicago truncatula HOM05D004002 ORTHO05D004668 2.4e-25 122.1 130 53.1
Hund09269 Selenicereus undatus HOM05D004002 ORTHO05D004668 3.1e-25 121.7 86 67.4
QL02p089531 Quercus lobata HOM05D004002 ORTHO05D004668 2.3e-20 105.5 76 73.7
C09p47760 Brassica napus HOM05D004002 ORTHO05D004668 2.2e-18 99.0 61 73.8
Aqoxy7G02287 Aquilegia oxysepala HOM05D004002 ORTHO05D004668 8.2e-18 97.1 91 50.5
C04p60270 Brassica napus HOM05D004002 ORTHO05D004668 8.2e-18 97.1 61 72.1
BolC8t50699H Brassica oleracea HOM05D004002 ORTHO05D004668 8.2e-18 97.1 61 72.1
ECA240G3712 Erigeron canadensis HOM05D004002 ORTHO05D004668 1.1e-17 96.7 87 60.9
BolC6t36594H Brassica oleracea HOM05D004002 ORTHO05D004668 4.1e-17 94.7 61 70.5
C06p14160 Brassica napus HOM05D004002 ORTHO05D004668 3.5e-16 91.7 58 70.7
Sp1g38940 Schrenkiella parvula HOM05D004002 ORTHO05D004668 5.9e-16 90.9 86 58.1
Cre10.g449950 Chlamydomonas reinhardtii HOM05D004002 ORTHO05D004668 9.4e-14 83.6 249 30.9
PSO541G4337 Papaver somniferum HOM05D004002 ORTHO05D004668 2.7e-13 82.0 79 57.0
ECA240G1422 Erigeron canadensis HOM05D004002 ORTHO05D004668 2.0e-11 75.9 72 56.9
Aqoxy7G02056 Aquilegia oxysepala HOM05D004002 ORTHO05D004668 5.4e-09 67.8 101 41.6
HanXRQChr14g0456471 Helianthus annuus HOM05D000103 ORTHO05D000001 1.3e-07 63.2 32 93.8
TPR.G35747 Trifolium pratense HOM05D004002 ORTHO05D004668 2.3e-07 62.4 76 52.6
HanXRQChr03g0064791 Helianthus annuus HOM05D004002 ORTHO05D004668 7.2e-06 57.4 48 58.3


User provided reference genes

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