Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_06930_v3 Cicer arietinum L. HOM05D004002 ORTHO05D004668 2.8e-191 671.8 337 100.0
Ca_30460_v3 Cicer arietinum L. HOM05D004002 ORTHO05D004668 3.6e-191 671.4 336 100.0
Psat4g037880 Pisum sativum HOM05D004002 ORTHO05D004668 3.8e-172 608.2 336 89.6
Medtr4g114930 Medicago truncatula HOM05D004002 ORTHO05D004668 1.7e-164 582.8 341 85.3
Glyma.13G158400 Glycine max HOM05D004002 ORTHO05D004668 1.6e-159 566.2 333 82.3
VMungo1215G0854 Vigna mungo HOM05D004002 ORTHO05D004668 1.5e-152 543.1 331 79.5
Lj4g0004437 Lotus japonicus HOM05D004002 ORTHO05D004668 9.7e-152 540.4 338 77.2
Lalb_Chr13g0301701 Lupinus albus HOM05D004002 ORTHO05D004668 7.2e-147 524.2 339 75.2
arahy.Tifrunner.gnm1.ann1.S50ZLM Arachis hypogaea HOM05D004002 ORTHO05D004668 1.4e-137 493.4 352 70.7
arahy.Tifrunner.gnm1.ann1.R22NLQ Arachis hypogaea HOM05D004002 ORTHO05D004668 1.8e-137 493.0 351 70.7
Lalb_Chr12g0198051 Lupinus albus HOM05D004002 ORTHO05D004668 5.3e-134 481.5 338 72.2
Prupe.7G246700 Prunus persica HOM05D004002 ORTHO05D004668 3.2e-131 472.2 339 69.0
MD02G1028100 Malus domestica HOM05D004002 ORTHO05D004668 6.1e-130 468.0 332 69.9
FAN28G1420 Fragaria x ananassa HOM05D004002 ORTHO05D004668 4.4e-128 461.8 330 67.0
CiPaw.03G246900 Carya illinoinensis HOM05D004002 ORTHO05D004668 9.8e-128 460.7 337 65.9
TPR.G26484 Trifolium pratense HOM05D004002 ORTHO05D004668 9.8e-128 460.7 338 71.6
FvH4_1g02820 Fragaria vesca HOM05D004002 ORTHO05D004668 1.7e-127 459.9 330 66.1
FAN19G2815 Fragaria x ananassa HOM05D004002 ORTHO05D004668 2.8e-127 459.1 330 66.1
CANSAT11G1469 Cannabis sativa HOM05D004002 ORTHO05D004668 8.3e-127 457.6 330 66.4
MELO3C010320.2 Cucumis melo HOM05D004002 ORTHO05D004668 8.3e-127 457.6 335 67.2
FAN23G1361 Fragaria x ananassa HOM05D004002 ORTHO05D004668 8.3e-127 457.6 329 66.3
MD15G1169800 Malus domestica HOM05D004002 ORTHO05D004668 1.8e-126 456.4 340 67.4
ClCG06G011370 Citrullus lanatus HOM05D004002 ORTHO05D004668 4.1e-126 455.3 335 66.6
QL02p089511 Quercus lobata HOM05D004002 ORTHO05D004668 5.9e-125 451.4 326 65.6
Dinv36495 Davidia involucrata HOM05D004002 ORTHO05D004668 1.0e-124 450.7 325 67.1
TWI32G0682 Tripterygium wilfordii HOM05D004002 ORTHO05D004668 1.7e-124 449.9 326 66.0
RcHm_v2.0_Chr2g0087941 Rosa chinensis HOM05D004002 ORTHO05D004668 1.5e-123 446.8 351 64.4
Ciclev10007259m.g Citrus clementina HOM05D004002 ORTHO05D004668 1.6e-122 443.4 320 67.2
Duzib168G0398 Durio zibethinus HOM05D004002 ORTHO05D004668 8.0e-122 441.0 326 64.1
Gorai.001G043400 Gossypium raimondii HOM05D004002 ORTHO05D004668 6.8e-121 438.0 314 64.6
Actinidia21966 Actinidia chinensis HOM05D004002 ORTHO05D004668 2.0e-120 436.4 324 65.7
Duzib187G1937 Durio zibethinus HOM05D004002 ORTHO05D004668 3.4e-120 435.6 323 64.1
Haze_25542 Corylus avellana HOM05D004002 ORTHO05D004668 4.4e-120 435.3 337 63.2
Gohir.D07G040800 Gossypium hirsutum HOM05D004002 ORTHO05D004668 4.4e-120 435.3 314 64.0
COL.COLO4_35123 Corchorus olitorius HOM05D004002 ORTHO05D004668 9.8e-120 434.1 337 60.8
Gohir.A07G036800 Gossypium hirsutum HOM05D004002 ORTHO05D004668 9.8e-120 434.1 314 64.0
Cfa003405 Carpinus fangiana HOM05D004002 ORTHO05D004668 1.7e-119 433.3 337 63.2
Manes.14G114600 Manihot esculenta HOM05D004002 ORTHO05D004668 1.7e-119 433.3 325 64.9
THA.LOC104811026 Tarenaya hassleriana HOM05D004002 ORTHO05D004668 2.2e-119 433.0 318 63.2
Atru.chr7.1118 Acer truncatum HOM05D004002 ORTHO05D004668 5.4e-118 428.3 319 64.9
Thecc.09G129800 Theobroma cacao HOM05D004002 ORTHO05D004668 7.0e-118 427.9 326 62.6
TAR636G2372 Trochodendron aralioides HOM05D004002 ORTHO05D004668 5.9e-117 424.9 331 63.4
Aa31LG4G12760 Aethionema arabicum HOM05D004002 ORTHO05D004668 7.7e-117 424.5 316 62.3
Thhalv10011188m.g Eutrema salsugineum HOM05D004002 ORTHO05D004668 1.7e-116 423.3 320 61.9
AT3G33530 Arabidopsis thaliana HOM05D004002 ORTHO05D004668 5.0e-116 421.8 319 62.1
Carub.0016s0010 Capsella rubella HOM05D004002 ORTHO05D004668 5.0e-116 421.8 322 63.0
Nitab4.5_0001776g0030 Nicotiana tabacum HOM05D004002 ORTHO05D004668 5.0e-116 421.8 319 64.3
Sopen07g003960 Solanum pennellii HOM05D004002 ORTHO05D004668 1.9e-115 419.9 316 64.9
Solyc07g008090.4 Solanum lycopersicum HOM05D004002 ORTHO05D004668 3.3e-115 419.1 316 64.6
Gorai.004G276600 Gossypium raimondii HOM05D004002 ORTHO05D004668 9.5e-115 417.5 322 61.8
Sp1g41730 Schrenkiella parvula HOM05D004002 ORTHO05D004668 1.2e-114 417.2 319 61.1
Gohir.D08G259100 Gossypium hirsutum HOM05D004002 ORTHO05D004668 1.6e-114 416.8 322 61.5
Gohir.A08G238400 Gossypium hirsutum HOM05D004002 ORTHO05D004668 2.8e-114 416.0 322 61.5
Lj7A426T59 Lonicera japonica HOM05D004002 ORTHO05D004668 4.7e-114 415.2 334 62.3
Nitab4.5_0000028g0120 Nicotiana tabacum HOM05D004002 ORTHO05D004668 6.1e-114 414.8 314 64.6
AL5G20770 Arabidopsis lyrata HOM05D004002 ORTHO05D004668 8.0e-114 414.5 322 62.1
BcaB07g33169 Brassica carinata HOM05D004002 ORTHO05D004668 8.0e-114 414.5 322 61.8
DCAR_014896 Daucus carota HOM05D004002 ORTHO05D004668 8.0e-114 414.5 319 63.6
BcaC08g43677 Brassica carinata HOM05D004002 ORTHO05D004668 1.0e-113 414.1 316 61.1
BraSC56t46385Z Brassica rapa HOM05D004002 ORTHO05D004668 1.4e-113 413.7 317 61.2
Potri.018G128400 Populus trichocarpa HOM05D004002 ORTHO05D004668 1.4e-113 413.7 340 63.2
vmacro20578 Vaccinium macrocarpon HOM05D004002 ORTHO05D004668 1.4e-113 413.7 322 63.7
C06p10960 Brassica napus HOM05D004002 ORTHO05D004668 2.3e-113 412.9 316 60.8
Sed0021658 Sechium edule HOM05D004002 ORTHO05D004668 2.3e-113 412.9 320 65.0
Sabra18G0109300 Salix brachista HOM05D004002 ORTHO05D004668 3.0e-113 412.5 353 60.9
CAN.G138.14 Capsicum annuum HOM05D004002 ORTHO05D004668 5.2e-113 411.8 329 61.1
BolC6t36178H Brassica oleracea HOM05D004002 ORTHO05D004668 6.8e-113 411.4 316 60.8
Nn2g12080 Nelumbo nucifera HOM05D004002 ORTHO05D004668 5.7e-112 408.3 329 60.5
Cc06_g08210 Coffea canephora HOM05D004002 ORTHO05D004668 9.8e-112 407.5 326 62.6
SalBow1G7082 Salvia bowleyana HOM05D004002 ORTHO05D004668 2.9e-111 406.0 319 62.7
PSO170G6007 Papaver somniferum HOM05D004002 ORTHO05D004668 1.4e-110 403.7 343 58.9
PSO017G4586 Papaver somniferum HOM05D004002 ORTHO05D004668 2.4e-110 402.9 339 59.6
Lsat_1_v5_gn_7_43900 Lactuca sativa HOM05D004002 ORTHO05D004668 2.0e-109 399.8 332 62.0
FAN26G1964 Fragaria x ananassa HOM05D004002 ORTHO05D004668 1.0e-108 397.5 332 58.7
Aqoxy7G02288 Aquilegia oxysepala HOM05D004002 ORTHO05D004668 2.3e-108 396.4 340 58.8
Sc18g0000460 Simmondsia chinensis HOM05D004002 ORTHO05D004668 3.3e-107 392.5 334 62.3
MBI04_g29332_MAGBIO Magnolia biondii HOM05D004002 ORTHO05D004668 3.6e-106 389.0 326 59.2
Lsat_1_v5_gn_8_62220 Lactuca sativa HOM05D004002 ORTHO05D004668 1.4e-105 387.1 331 61.6
CsaV3_1G030400 Cucumis sativus L. HOM05D004002 ORTHO05D004668 1.8e-105 386.7 283 67.5
DCAR_010315 Daucus carota HOM05D004002 ORTHO05D004668 4.0e-105 385.6 331 58.9
HanXRQChr09g0241521 Helianthus annuus HOM05D004002 ORTHO05D004668 1.5e-104 383.6 334 59.9
AUR62013328 Chenopodium quinoa HOM05D004002 ORTHO05D004668 1.3e-103 380.6 340 57.9
SHI03372 Sapria himalayana HOM05D004002 ORTHO05D004668 1.4e-102 377.1 347 55.9
EL10Ac8g18695 Beta vulgaris HOM05D004002 ORTHO05D004668 5.0e-100 368.6 352 55.7
ECA236G2336 Erigeron canadensis HOM05D004002 ORTHO05D004668 5.0e-100 368.6 327 58.7
THA.LOC104808973 Tarenaya hassleriana HOM05D004002 ORTHO05D004668 1.1e-99 367.5 331 54.4
AT2G26610 Arabidopsis thaliana HOM05D004002 ORTHO05D004668 1.5e-99 367.1 321 58.9
Hund26527 Selenicereus undatus HOM05D004002 ORTHO05D004668 2.5e-99 366.3 322 57.8
Rhsim01G0066800 Rhododendron simsii HOM05D004002 ORTHO05D004668 1.6e-98 363.6 344 57.8
HanXRQChr05g0143441 Helianthus annuus HOM05D004002 ORTHO05D004668 2.1e-98 363.2 331 56.2
Ah.09g225140 Amaranthus hybridus HOM05D004002 ORTHO05D004668 4.7e-98 362.1 325 56.9
CsaV3_UNG026150 Cucumis sativus L. HOM05D004002 ORTHO05D004668 1.1e-97 360.9 283 64.3
AL4G19600 Arabidopsis lyrata HOM05D004002 ORTHO05D004668 1.5e-96 357.1 321 57.0
Aa31LG5G9160 Aethionema arabicum HOM05D004002 ORTHO05D004668 3.4e-96 355.9 330 54.5
ECA240G1422 Erigeron canadensis HOM05D004002 ORTHO05D004668 5.8e-96 355.1 325 58.8
Carub.0004s0687 Capsella rubella HOM05D004002 ORTHO05D004668 4.9e-95 352.1 319 55.5
Migut.K00437 Erythranthe guttata HOM05D004002 ORTHO05D004668 4.1e-94 349.0 318 54.4
A03p26850 Brassica napus HOM05D004002 ORTHO05D004668 3.5e-93 345.9 310 54.2
BraA03t11897Z Brassica rapa HOM05D004002 ORTHO05D004668 3.5e-93 345.9 310 54.2
BcaC01g04911 Brassica carinata HOM05D004002 ORTHO05D004668 6.0e-93 345.1 310 53.9
C03p32190 Brassica napus HOM05D004002 ORTHO05D004668 6.6e-92 341.7 310 53.5
BolC3t15561H Brassica oleracea HOM05D004002 ORTHO05D004668 6.6e-92 341.7 310 53.5
CDE03G0124 Ceratophyllum demersum HOM05D004002 ORTHO05D004668 6.6e-92 341.7 328 53.4
MSTRG.26413 Avicennia marina HOM05D004002 ORTHO05D004668 1.9e-91 340.1 267 61.8
BcaB01g03030 Brassica carinata HOM05D004002 ORTHO05D004668 4.7e-90 335.5 319 53.0
HPP92_024596 Vanilla planifolia HOM05D004002 ORTHO05D004668 4.7e-90 335.5 334 51.5
Sp4g09400 Schrenkiella parvula HOM05D004002 ORTHO05D004668 2.9e-87 326.2 319 52.7
SGA_v2.0_scaffold109G31044 Striga asiatica HOM05D004002 ORTHO05D004668 8.4e-87 324.7 241 63.9
Eucgr.C04259 Eucalyptus grandis HOM05D004002 ORTHO05D004668 1.0e-84 317.8 292 53.1
Oeu012614.1 Olea europaea HOM05D004002 ORTHO05D004668 1.1e-83 314.3 327 52.0
Haze_13487 Corylus avellana HOM05D004002 ORTHO05D004668 1.9e-83 313.5 235 62.1
GSVIVG01015557001 Vitis vinifera HOM05D004002 ORTHO05D004668 8.1e-82 308.1 257 59.9
SEGI_36835 Sequoiadendron giganteum HOM05D004002 ORTHO05D004668 3.0e-76 289.7 313 48.6
ATR1120G180 Amborella trichopoda HOM05D004002 ORTHO05D004668 5.1e-76 288.9 308 49.0
Cpa.g.sc46.23 Carica papaya HOM05D004002 ORTHO05D004668 1.2e-72 277.7 329 45.6
Zm00001eb231770 Zea mays HOM05D004002 ORTHO05D004668 1.2e-72 277.7 347 47.0
Os02g0136933 Oryza sativa ssp. japonica HOM05D004002 ORTHO05D004668 7.6e-72 275.0 321 47.4
Pp3c7_2590 Physcomitrium patens HOM05D004002 ORTHO05D004668 2.1e-69 266.9 315 41.3
Mapoly0041s0113 Marchantia polymorpha HOM05D004002 ORTHO05D004668 8.7e-68 261.5 314 45.5
Pp3c11_23650 Physcomitrium patens HOM05D004002 ORTHO05D004668 1.5e-67 260.8 315 40.0
Dinv41489 Davidia involucrata HOM05D004002 ORTHO05D004668 4.8e-66 255.8 253 56.5
Aqoxy7G02287 Aquilegia oxysepala HOM05D004002 ORTHO05D004668 2.9e-63 246.5 258 50.4
AUR62011160 Chenopodium quinoa HOM05D004002 ORTHO05D004668 1.3e-52 211.1 220 47.7
SEGI_17541 Sequoiadendron giganteum HOM05D004002 ORTHO05D004668 2.8e-50 203.4 220 45.9
Haze_18451 Corylus avellana HOM05D004002 ORTHO05D004668 9.0e-49 198.4 129 69.0
CDE04G2506 Ceratophyllum demersum HOM05D004002 ORTHO05D004668 5.0e-47 192.6 171 53.8
unitig_748.g7159 Utricularia gibba HOM05D004002 ORTHO05D004668 3.7e-42 176.4 299 35.8
FAN23G2019 Fragaria x ananassa HOM05D004002 ORTHO05D004668 1.1e-41 174.9 122 66.4
CBR_g41081 Chara braunii HOM05D004002 ORTHO05D004668 6.9e-41 172.2 348 32.2
Cre10.g449950 Chlamydomonas reinhardtii HOM05D004002 ORTHO05D004668 2.0e-19 100.9 353 25.8
Nn8g39500 Nelumbo nucifera HOM05D004002 ORTHO05D004668 2.7e-13 80.5 75 57.3
SMO347G0439 Selaginella moellendorffii HOM05D004002 ORTHO05D004668 8.8e-12 75.5 62 50.0
RcHm_v2.0_Chr1g0384271 Rosa chinensis HOM05D004002 ORTHO05D004668 7.5e-11 72.4 118 44.9


User provided reference genes

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