Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_06909_v3 Cicer arietinum L. HOM05D006232 ORTHO05D007746 1.3e-151 540.8 575 100.0
Medtr7g016910 Medicago truncatula HOM05D006232 ORTHO05D007746 1.2e-133 481.1 574 94.8
Psat3g203240 Pisum sativum HOM05D006232 ORTHO05D007746 2.2e-127 460.3 575 92.2
TPR.G23396 Trifolium pratense HOM05D006232 ORTHO05D007746 2.8e-119 433.3 574 85.9
Phvul.011G061000 Phaseolus vulgaris HOM05D006232 ORTHO05D007746 2.5e-99 367.1 578 65.9
VMungo1127G1689 Vigna mungo HOM05D006232 ORTHO05D007746 3.1e-97 360.1 443 81.0
Lalb_Chr15g0076621 Lupinus albus HOM05D006232 ORTHO05D007746 3.5e-93 346.7 446 79.4
arahy.Tifrunner.gnm1.ann1.YGP4KT Arachis hypogaea HOM05D006232 ORTHO05D007746 2.8e-90 337.0 464 73.9
arahy.Tifrunner.gnm1.ann1.E4FCEH Arachis hypogaea HOM05D006232 ORTHO05D007746 8.9e-89 332.0 464 72.4
QL08p048137 Quercus lobata HOM05D006232 ORTHO05D007746 3.7e-87 326.6 450 75.6
Prupe.2G203600 Prunus persica HOM05D006232 ORTHO05D007746 4.1e-86 323.2 453 75.7
arahy.Tifrunner.gnm1.ann1.NHK9RM Arachis hypogaea HOM05D006232 ORTHO05D007746 7.1e-86 322.4 464 47.4
arahy.Tifrunner.gnm1.ann1.MJ9C76 Arachis hypogaea HOM05D006232 ORTHO05D007746 1.6e-85 321.2 463 73.9
Lj1g0009831 Lotus japonicus HOM05D006232 ORTHO05D007746 4.3e-83 313.2 417 80.8
Glyma.11G135300 Glycine max HOM05D006232 ORTHO05D007746 1.4e-81 308.1 418 79.7
Thecc.01G330100 Theobroma cacao HOM05D006232 ORTHO05D007746 5.2e-81 306.2 453 74.6
Rhsim06G0114200 Rhododendron simsii HOM05D006232 ORTHO05D007746 6.8e-81 305.8 450 73.3
Manes.07G094000 Manihot esculenta HOM05D006232 ORTHO05D007746 5.8e-80 302.8 452 74.8
CSS0005474 Camellia sinensis var. sinensis HOM05D006232 ORTHO05D007746 3.8e-79 300.1 454 73.3
CSS0021551 Camellia sinensis var. sinensis HOM05D006232 ORTHO05D007746 3.8e-79 300.1 454 73.3
MD01G1097600 Malus domestica HOM05D006232 ORTHO05D007746 5.4e-78 296.2 461 49.2
THA.LOC104801339 Tarenaya hassleriana HOM05D006232 ORTHO05D007746 9.3e-78 295.4 447 72.9
vmacro04311 Vaccinium macrocarpon HOM05D006232 ORTHO05D007746 1.6e-77 294.7 450 73.1
Gohir.D07G137500 Gossypium hirsutum HOM05D006232 ORTHO05D007746 7.8e-77 292.4 449 73.3
CSS0030017 Camellia sinensis var. sinensis HOM05D006232 ORTHO05D007746 1.9e-75 287.7 454 72.2
CiPaw.11G045400 Carya illinoinensis HOM05D006232 ORTHO05D007746 5.6e-75 286.2 454 72.2
Sc15g0005080 Simmondsia chinensis HOM05D006232 ORTHO05D007746 1.3e-74 285.0 452 72.1
Oeu062029.1 Olea europaea HOM05D006232 ORTHO05D007746 1.1e-73 282.0 447 47.0
Aqoxy3G03779 Aquilegia oxysepala HOM05D006232 ORTHO05D007746 4.0e-73 280.0 452 71.5
Nn2g14420 Nelumbo nucifera HOM05D006232 ORTHO05D007746 6.9e-73 279.3 455 71.9
PSO782G2059 Papaver somniferum HOM05D006232 ORTHO05D007746 9.0e-73 278.9 453 70.4
MSTRG.8185 Avicennia marina HOM05D006232 ORTHO05D007746 2.0e-72 277.7 449 52.8
AUR62025831 Chenopodium quinoa HOM05D006232 ORTHO05D007746 2.0e-72 277.7 451 70.5
Nitab4.5_0001677g0020 Nicotiana tabacum HOM05D006232 ORTHO05D007746 2.9e-71 273.9 442 56.1
Duzib138G0398 Durio zibethinus HOM05D006232 ORTHO05D007746 3.8e-71 273.5 451 72.9
Gorai.001G149600 Gossypium raimondii HOM05D006232 ORTHO05D007746 1.4e-70 271.6 424 75.2
Gohir.A07G133100 Gossypium hirsutum HOM05D006232 ORTHO05D007746 3.2e-70 270.4 424 75.0
Nitab4.5_0000743g0190 Nicotiana tabacum HOM05D006232 ORTHO05D007746 1.6e-69 268.1 443 55.8
EL10Ac1g00635 Beta vulgaris HOM05D006232 ORTHO05D007746 1.3e-68 265.0 452 69.7
MBI12_g26899_MAGBIO Magnolia biondii HOM05D006232 ORTHO05D007746 2.5e-67 260.8 450 70.9
EL10Ac1g00638 Beta vulgaris HOM05D006232 ORTHO05D007746 5.6e-67 259.6 452 68.1
MD01G1095900 Malus domestica HOM05D006232 ORTHO05D007746 2.1e-66 257.7 203 61.1
Haze_15770 Corylus avellana HOM05D006232 ORTHO05D007746 2.8e-66 257.3 426 75.1
Actinidia23019 Actinidia chinensis HOM05D006232 ORTHO05D007746 3.6e-66 256.9 429 73.7
SGA_v2.0_scaffold153G36899 Striga asiatica HOM05D006232 ORTHO05D007315 6.2e-66 256.1 444 58.6
COL.COLO4_23076 Corchorus olitorius HOM05D006232 ORTHO05D007746 1.1e-65 255.4 200 62.5
BcaB01g02134 Brassica carinata HOM05D006232 ORTHO05D007746 1.4e-65 255.0 442 54.8
RcHm_v2.0_Chr1g0361811 Rosa chinensis HOM05D006232 ORTHO05D007746 3.1e-65 253.8 422 71.6
Thhalv10028437m.g Eutrema salsugineum HOM05D006232 ORTHO05D007746 5.3e-65 253.1 444 71.4
AT4G01570 Arabidopsis thaliana HOM05D006232 ORTHO05D007746 9.0e-65 252.3 444 71.2
Potri.002G183100 Populus trichocarpa HOM05D006232 ORTHO05D007746 9.0e-65 252.3 417 74.3
Potri.002G182900 Populus trichocarpa HOM05D006232 ORTHO05D007746 2.0e-64 251.1 417 74.8
TWI59G0137 Tripterygium wilfordii HOM05D006232 ORTHO05D007746 2.0e-64 251.1 427 69.6
DCAR_015569 Daucus carota HOM05D006232 ORTHO05D007746 2.6e-64 250.8 425 69.6
Sabra02G0132400 Salix brachista HOM05D006232 ORTHO05D007746 2.6e-64 250.8 418 73.9
FAN03G0759 Fragaria x ananassa HOM05D006232 ORTHO05D007746 7.6e-64 249.2 423 71.6
FvH4_7g18170 Fragaria vesca HOM05D006232 ORTHO05D007746 1.7e-63 248.1 422 70.9
ECA247G0464 Erigeron canadensis HOM05D006232 ORTHO05D007746 2.2e-63 247.7 445 67.2
FAN06G0943 Fragaria x ananassa HOM05D006232 ORTHO05D007746 3.8e-63 246.9 422 70.9
Sp6g01480 Schrenkiella parvula HOM05D006232 ORTHO05D007746 3.8e-63 246.9 444 71.2
BcaC04g24085 Brassica carinata HOM05D006232 ORTHO05D007746 6.4e-63 246.1 440 57.7
FAN06G1608 Fragaria x ananassa HOM05D006232 ORTHO05D007746 1.1e-62 245.4 422 70.6
Carub.0006s3563 Capsella rubella HOM05D006232 ORTHO05D007746 2.4e-62 244.2 446 70.6
SHI19982 Sapria himalayana HOM05D006232 ORTHO05D007746 3.2e-62 243.8 444 69.8
Aa31LG5G1290 Aethionema arabicum HOM05D006232 ORTHO05D007746 9.3e-62 242.3 443 70.7
AL6G51770 Arabidopsis lyrata HOM05D006232 ORTHO05D007746 9.3e-62 242.3 444 70.3
Cpa.g.sc314.5 Carica papaya HOM05D006232 ORTHO05D007746 1.2e-61 241.9 202 58.4
FAN10G2312 Fragaria x ananassa HOM05D006232 ORTHO05D007746 2.1e-61 241.1 425 61.9
Cc09_g04270 Coffea canephora HOM05D006232 ORTHO05D007746 4.6e-61 240.0 421 52.5
Eucgr.A00015 Eucalyptus grandis HOM05D006232 ORTHO05D007746 3.9e-60 236.9 431 70.3
SalBow8G3454 Salvia bowleyana HOM05D006232 ORTHO05D007746 5.1e-60 236.5 442 37.6
CARHR250090 Cardamine hirsuta HOM05D006232 ORTHO05D007746 7.4e-59 232.6 444 68.9
Solyc11g008760.3 Solanum lycopersicum HOM05D006232 ORTHO05D007746 2.1e-58 231.1 420 47.1
Sopen11g004540 Solanum pennellii HOM05D006232 ORTHO05D007746 1.1e-57 228.8 419 47.5
PGSC0003DMG400016173 Solanum tuberosum HOM05D006232 ORTHO05D007746 1.8e-57 228.0 419 48.2
CSS0047958 Camellia sinensis var. sinensis HOM05D006232 ORTHO05D007746 9.0e-57 225.7 454 66.7
Atru.chr5.807 Acer truncatum HOM05D006232 ORTHO05D007746 1.5e-56 224.9 424 71.0
PGR092G0006 Punica granatum HOM05D006232 ORTHO05D007746 1.5e-56 224.9 414 72.2
Sed0020235 Sechium edule HOM05D006232 ORTHO05D007746 1.4e-54 218.4 416 71.9
CAN.G691.16 Capsicum annuum HOM05D006232 ORTHO05D007746 1.9e-54 218.0 422 44.3
MELO3C022296.2 Cucumis melo HOM05D006232 ORTHO05D007746 3.2e-54 217.2 416 70.7
C09p01210 Brassica napus HOM05D006232 ORTHO05D007746 9.3e-54 215.7 192 58.3
BolC9t53055H Brassica oleracea HOM05D006232 ORTHO05D007746 9.3e-54 215.7 192 58.3
Migut.F01833 Erythranthe guttata HOM05D006232 ORTHO05D007746 3.5e-53 213.8 191 56.0
A09p01130 Brassica napus HOM05D006232 ORTHO05D007746 1.3e-52 211.8 441 57.1
CDE09G0095 Ceratophyllum demersum HOM05D006232 ORTHO05D007746 3.0e-52 210.7 421 69.6
HanXRQChr09g0270591 Helianthus annuus HOM05D006232 ORTHO05D007746 3.0e-52 210.7 190 55.8
TAR371G1107 Trochodendron aralioides HOM05D006232 ORTHO05D007746 3.9e-52 210.3 177 59.3
HPP92_002273 Vanilla planifolia HOM05D006232 ORTHO05D007746 1.3e-50 205.3 193 53.9
BraA09t35784Z Brassica rapa HOM05D006232 ORTHO05D007746 6.9e-49 199.5 189 56.6
GSVIVG01010456001 Vitis vinifera HOM05D006232 ORTHO05D007746 9.0e-49 199.1 167 59.9
FAN10G2235 Fragaria x ananassa HOM05D006232 ORTHO05D007746 3.4e-48 197.2 173 56.1
Lsat_1_v5_gn_4_109581 Lactuca sativa HOM05D006232 ORTHO05D007746 1.7e-47 194.9 181 53.6
Zm00001eb055010 Zea mays HOM05D006232 ORTHO05D007746 5.0e-47 193.4 192 47.9
FAN01G1185 Fragaria x ananassa HOM05D006232 ORTHO05D007746 4.2e-46 190.3 451 62.5
Os03g0712900 Oryza sativa ssp. japonica HOM05D006232 ORTHO05D007746 1.2e-45 188.7 192 48.4
ATR0684G123 Amborella trichopoda HOM05D006232 ORTHO05D007746 2.3e-44 184.5 191 49.7
Peaxi162Scf00254g00041 Petunia axillaris HOM05D006232 ORTHO05D007746 4.3e-43 180.3 425 44.0
Peaxi162Scf00890g00001 Petunia axillaris HOM05D006232 ORTHO05D007746 1.5e-40 171.8 168 53.6
Hund17178 Selenicereus undatus HOM05D006232 ORTHO05D007746 5.9e-40 169.9 202 45.0
CsaV3_6G008430 Cucumis sativus L. HOM05D006232 ORTHO05D007746 1.0e-39 169.1 168 51.8
ClCG06G002380 Citrullus lanatus HOM05D007869 ORTHO05D009962 8.5e-39 166.0 157 54.1
Nn6g33415 Nelumbo nucifera HOM05D006232 ORTHO05D007746 6.1e-37 159.8 163 52.8
MD01G1096300 Malus domestica HOM05D006232 ORTHO05D007746 3.3e-35 154.1 107 69.2
Dinv01553 Davidia involucrata HOM05D006232 ORTHO05D007746 1.4e-33 148.7 107 68.2
Hma1.2p1_0074F.1_g038910 Hydrangea macrophylla HOM05D006232 ORTHO05D007746 4.5e-32 143.7 324 77.8
MD01G1096200 Malus domestica HOM05D006232 ORTHO05D007746 1.4e-28 132.1 305 78.7
SGA_v2.0_scaffold83G26364 Striga asiatica HOM05D003442 ORTHO05D004005 3.0e-28 131.0 132 52.3
Dinv01552 Davidia involucrata HOM05D006232 ORTHO05D007746 1.3e-26 125.6 87 64.4
TAR371G0213 Trochodendron aralioides HOM05D006232 ORTHO05D007746 1.0e-23 115.9 90 57.8
Ciclev10023806m.g Citrus clementina HOM05D006232 ORTHO05D007746 1.5e-22 112.1 60 83.3
SGA_v2.0_scaffold83G26365 Striga asiatica HOM05D006232 ORTHO05D007746 4.2e-22 110.5 86 54.7
Lj1P725T29 Lonicera japonica HOM05D006232 ORTHO05D007746 1.7e-18 98.6 93 48.4
Lj1P725T28 Lonicera japonica HOM05D006232 ORTHO05D007746 8.0e-13 79.7 46 80.4
CAN.G395.52 Capsicum annuum HOM05D006232 ORTHO05D007746 2.0e-11 75.1 93 39.8
MD01G1131700 Malus domestica HOM05D006232 ORTHO05D007746 3.4e-11 74.3 91 44.0
CAN.G395.53 Capsicum annuum HOM05D006232 ORTHO05D007746 9.8e-11 72.8 39 87.2
VMungo0720G1459 Vigna mungo HOM05D012259 ORTHO05D008631 1.3e-10 72.4 49 67.3
SGA_v2.0_scaffold4055G54421 Striga asiatica HOM05D006232 ORTHO05D007746 3.7e-10 70.9 41 80.5
Dinv15329 Davidia involucrata HOM05D006232 ORTHO05D007746 1.1e-09 69.3 41 75.6
SEGI_19483 Sequoiadendron giganteum HOM05D006232 ORTHO05D007746 5.5e-06 57.0 57 42.1


User provided reference genes

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