Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_06818_v3 Cicer arietinum L. HOM05D004709 ORTHO05D005669 1.3e-45 186.0 97 100.0
Psat3g200920 Pisum sativum HOM05D004709 ORTHO05D005669 1.6e-35 152.5 96 79.2
Medtr0287s0050 Medicago truncatula HOM05D004709 ORTHO05D005669 2.0e-33 145.6 91 76.9
Medtr7g012870 Medicago truncatula HOM05D004709 ORTHO05D005669 2.0e-33 145.6 91 76.9
Phvul.008G035200 Phaseolus vulgaris HOM05D004709 ORTHO05D005669 6.0e-30 134.0 92 71.7
Glyma.08G242600 Glycine max HOM05D004709 ORTHO05D005669 3.0e-29 131.7 96 68.8
Glyma.18G264800 Glycine max HOM05D004709 ORTHO05D005669 1.5e-28 129.4 95 68.4
MD00G1156500 Malus domestica HOM05D004709 ORTHO05D005669 1.6e-27 125.9 85 71.8
Nn4g23362 Nelumbo nucifera HOM05D004709 ORTHO05D005669 2.1e-27 125.6 91 67.0
Lsat_1_v5_gn_5_22101 Lactuca sativa HOM05D004709 ORTHO05D005669 2.8e-27 125.2 89 70.8
HanXRQChr05g0157171 Helianthus annuus HOM05D004709 ORTHO05D005669 4.8e-27 124.4 85 72.9
RcHm_v2.0_Chr2g0166371 Rosa chinensis HOM05D004709 ORTHO05D005669 4.8e-27 124.4 90 68.9
Sed0002201 Sechium edule HOM05D004709 ORTHO05D005669 1.4e-26 122.9 85 70.6
FvH4_6g47340 Fragaria vesca HOM05D004709 ORTHO05D005669 1.8e-26 122.5 93 64.5
ClCG04G011960 Citrullus lanatus HOM05D004709 ORTHO05D005669 2.4e-26 122.1 85 70.6
Nitab4.5_0002881g0040 Nicotiana tabacum HOM05D004709 ORTHO05D005669 5.3e-26 120.9 85 68.2
FAN14G4554 Fragaria x ananassa HOM05D004709 ORTHO05D005669 6.9e-26 120.6 91 64.8
QL10p018658 Quercus lobata HOM05D004709 ORTHO05D005669 6.9e-26 120.6 83 71.1
Prupe.3G258000 Prunus persica HOM05D004709 ORTHO05D005669 9.0e-26 120.2 84 69.0
Solyc03g115490.1 Solanum lycopersicum HOM05D004709 ORTHO05D005669 9.0e-26 120.2 85 67.1
Sopen03g034490 Solanum pennellii HOM05D004709 ORTHO05D005669 9.0e-26 120.2 85 67.1
PGSC0003DMG400024653 Solanum tuberosum HOM05D004709 ORTHO05D005669 9.0e-26 120.2 85 67.1
Lj1g0000800 Lotus japonicus HOM05D004709 ORTHO05D005669 1.2e-25 119.8 87 69.0
Nitab4.5_0004511g0070 Nicotiana tabacum HOM05D004709 ORTHO05D005669 1.2e-25 119.8 85 67.1
FAN09G0998 Fragaria x ananassa HOM05D004709 ORTHO05D005669 1.5e-25 119.4 91 64.8
CAN.G479.31 Capsicum annuum HOM05D004709 ORTHO05D005669 2.6e-25 118.6 85 67.1
COL.COLO4_36893 Corchorus olitorius HOM05D004709 ORTHO05D005669 2.6e-25 118.6 91 64.8
Lalb_Chr10g0093091 Lupinus albus HOM05D004709 ORTHO05D005669 2.6e-25 118.6 93 67.7
CsaV3_1G005830 Cucumis sativus L. HOM05D004709 ORTHO05D005669 3.4e-25 118.2 85 67.1
MELO3C002013.2 Cucumis melo HOM05D004709 ORTHO05D005669 4.5e-25 117.9 85 67.1
Lsat_1_v5_gn_1_13721 Lactuca sativa HOM05D004709 ORTHO05D005669 4.5e-25 117.9 89 66.3
Thecc.03G097000 Theobroma cacao HOM05D004709 ORTHO05D005669 4.5e-25 117.9 91 64.8
TAR622G0455 Trochodendron aralioides HOM05D004709 ORTHO05D005669 4.5e-25 117.9 92 65.2
Ah.10g032000 Amaranthus hybridus HOM05D004709 ORTHO05D005669 5.8e-25 117.5 90 63.3
FAN05G1711 Fragaria x ananassa HOM05D004709 ORTHO05D005669 5.8e-25 117.5 91 63.7
MD09G1062400 Malus domestica HOM05D004709 ORTHO05D005669 5.8e-25 117.5 82 69.5
ECA246G5156 Erigeron canadensis HOM05D004709 ORTHO05D005669 7.6e-25 117.1 89 69.7
FAN02G1874 Fragaria x ananassa HOM05D004709 ORTHO05D005669 9.9e-25 116.7 93 62.4
Gohir.A12G180600 Gossypium hirsutum HOM05D004709 ORTHO05D005669 9.9e-25 116.7 91 62.6
PSO478G1650 Papaver somniferum HOM05D004709 ORTHO05D005669 9.9e-25 116.7 87 64.4
AUR62042435 Chenopodium quinoa HOM05D004709 ORTHO05D005669 1.3e-24 116.3 84 67.9
Gohir.D12G183300 Gossypium hirsutum HOM05D004709 ORTHO05D005669 1.3e-24 116.3 91 62.6
AUR62018162 Chenopodium quinoa HOM05D004709 ORTHO05D005669 1.7e-24 115.9 84 67.9
COL.COLO4_31014 Corchorus olitorius HOM05D004709 ORTHO05D005669 1.7e-24 115.9 91 63.7
Medtr7g083770 Medicago truncatula HOM05D004709 ORTHO05D005669 1.7e-24 115.9 79 68.4
Nn7g35950 Nelumbo nucifera HOM05D004709 ORTHO05D005669 1.7e-24 115.9 91 63.7
Nn3g17388 Nelumbo nucifera HOM05D004709 ORTHO05D005669 2.2e-24 115.5 88 64.8
Duzib205G1485 Durio zibethinus HOM05D004709 ORTHO05D005669 2.9e-24 115.2 91 61.5
SalBow5G3312 Salvia bowleyana HOM05D004709 ORTHO05D005669 2.9e-24 115.2 87 64.4
CANSAT56G2672 Cannabis sativa HOM05D004709 ORTHO05D005669 6.4e-24 114.0 87 60.9
MBI16_g16369_MAGBIO Magnolia biondii HOM05D004709 ORTHO05D005669 6.4e-24 114.0 85 67.1
TAR371G0159 Trochodendron aralioides HOM05D004709 ORTHO05D005669 6.4e-24 114.0 92 62.0
CiPaw.11G049800 Carya illinoinensis HOM05D004709 ORTHO05D005669 8.4e-24 113.6 90 63.3
Cfa019297 Carpinus fangiana HOM05D004709 ORTHO05D005669 1.1e-23 113.2 92 63.0
HanXRQChr04g0101451 Helianthus annuus HOM05D004709 ORTHO05D005669 1.1e-23 113.2 89 62.9
Manes.06G087400 Manihot esculenta HOM05D004709 ORTHO05D005669 1.4e-23 112.8 88 67.0
ATR0064G063 Amborella trichopoda HOM05D004709 ORTHO05D005669 2.4e-23 112.1 85 63.5
Aqoxy3G03572 Aquilegia oxysepala HOM05D004709 ORTHO05D005669 3.2e-23 111.7 83 66.3
Sc10g0003220 Simmondsia chinensis HOM05D004709 ORTHO05D005669 3.2e-23 111.7 87 64.4
Gorai.008G196600 Gossypium raimondii HOM05D004709 ORTHO05D005669 4.2e-23 111.3 91 60.4
Migut.D01673 Erythranthe guttata HOM05D004709 ORTHO05D005669 5.5e-23 110.9 85 63.5
PGR083G1512 Punica granatum HOM05D004709 ORTHO05D005669 5.5e-23 110.9 91 59.3
Ciclev10022528m.g Citrus clementina HOM05D004709 ORTHO05D005669 9.3e-23 110.2 87 59.8
Gohir.D03G095600 Gossypium hirsutum HOM05D004709 ORTHO05D005669 9.3e-23 110.2 90 61.1
Gorai.003G100300 Gossypium raimondii HOM05D004709 ORTHO05D005669 9.3e-23 110.2 90 61.1
Gohir.A03G069100 Gossypium hirsutum HOM05D004709 ORTHO05D005669 1.2e-22 109.8 90 61.1
Rhsim08G0148900 Rhododendron simsii HOM05D004709 ORTHO05D005669 1.6e-22 109.4 89 60.7
Cpa.g.sc94.6 Carica papaya HOM05D004709 ORTHO05D005669 2.1e-22 109.0 85 61.2
Zm00001eb011200 Zea mays HOM05D004709 ORTHO05D005669 2.1e-22 109.0 85 61.2
Zm00001eb398330 Zea mays HOM05D004709 ORTHO05D005669 2.1e-22 109.0 85 62.4
Duzib084G0757 Durio zibethinus HOM05D004709 ORTHO05D005669 3.5e-22 108.2 91 59.3
Eucgr.B00568 Eucalyptus grandis HOM05D004709 ORTHO05D005669 4.6e-22 107.8 90 58.9
Os08g0239000 Oryza sativa ssp. japonica HOM05D004709 ORTHO05D005669 6.0e-22 107.5 84 64.3
Prupe.5G200900 Prunus persica HOM05D004709 ORTHO05D005669 6.0e-22 107.5 86 60.5
Aa31LG11G2140 Aethionema arabicum HOM05D004709 ORTHO05D005669 7.9e-22 107.1 87 59.8
MELO3C017207.2 Cucumis melo HOM05D004709 ORTHO05D005669 7.9e-22 107.1 84 63.1
TWI18G0167 Tripterygium wilfordii HOM05D004709 ORTHO05D005669 1.0e-21 106.7 83 60.2
ClCG06G015840 Citrullus lanatus HOM05D004709 ORTHO05D005669 1.3e-21 106.3 84 63.1
Manes.14G083600 Manihot esculenta HOM05D004709 ORTHO05D005669 1.3e-21 106.3 81 65.4
THA.LOC104801321 Tarenaya hassleriana HOM05D004709 ORTHO05D005669 1.3e-21 106.3 87 60.9
Sed0023667 Sechium edule HOM05D004709 ORTHO05D005669 1.8e-21 105.9 85 63.5
HanXRQChr17g0545301 Helianthus annuus HOM05D004709 ORTHO05D005669 2.3e-21 105.5 89 60.7
Potri.009G079800 Populus trichocarpa HOM05D004709 ORTHO05D005669 3.0e-21 105.1 81 65.4
Sed0019301 Sechium edule HOM05D004709 ORTHO05D005669 3.0e-21 105.1 85 62.4
EL10Ac2g03100 Beta vulgaris HOM05D004709 ORTHO05D005669 5.1e-21 104.4 83 59.0
SHI27018 Sapria himalayana HOM05D004709 ORTHO05D005669 5.1e-21 104.4 81 61.7
AUR62008495 Chenopodium quinoa HOM05D004709 ORTHO05D005669 6.7e-21 104.0 89 53.9
Rhsim12G0152500 Rhododendron simsii HOM05D004709 ORTHO05D005669 6.7e-21 104.0 75 69.3
Os10g0406600 Oryza sativa ssp. japonica HOM05D004709 ORTHO05D005669 8.7e-21 103.6 87 59.8
Peaxi162Scf00106g00072 Petunia axillaris HOM05D004709 ORTHO05D005669 1.9e-20 102.4 81 63.0
Atru.chr2.2420 Acer truncatum HOM05D004709 ORTHO05D005669 4.3e-20 101.3 91 56.0
Dinv10689 Davidia involucrata HOM05D004709 ORTHO05D005669 1.6e-19 99.4 71 70.4
DCAR_013071 Daucus carota HOM05D000316 ORTHO05D000374 2.1e-19 99.0 77 67.5
Mapoly0030s0074 Marchantia polymorpha HOM05D004709 ORTHO05D005669 1.1e-18 96.7 85 54.1
Sc04g0003050 Simmondsia chinensis HOM05D004709 ORTHO05D005669 1.8e-18 95.9 89 56.2
MD08G1088600 Malus domestica HOM05D004709 ORTHO05D005669 4.0e-18 94.7 80 60.0
CBR_g38475 Chara braunii HOM05D004709 ORTHO05D005669 9.0e-18 93.6 84 51.2
Actinidia09247 Actinidia chinensis HOM05D004709 ORTHO05D005669 2.6e-17 92.0 75 61.3
Pp3c1_9190 Physcomitrium patens HOM05D004709 ORTHO05D005669 5.8e-17 90.9 85 45.9
Gohir.D12G183150 Gossypium hirsutum HOM05D004709 ORTHO05D005669 1.0e-16 90.1 72 61.1
Dinv38784 Davidia involucrata HOM05D004709 ORTHO05D005669 1.3e-16 89.7 62 71.0
Thhalv10005205m.g Eutrema salsugineum HOM05D004709 ORTHO05D005669 1.7e-16 89.4 82 52.4
C02p61460 Brassica napus HOM05D004709 ORTHO05D005669 2.2e-16 89.0 80 51.2
BolC2t12197H Brassica oleracea HOM05D004709 ORTHO05D005669 2.2e-16 89.0 80 51.2
Actinidia04845 Actinidia chinensis HOM05D004709 ORTHO05D005669 3.8e-16 88.2 67 65.7
GSVIVG01007919001 Vitis vinifera HOM05D004709 ORTHO05D005669 6.5e-16 87.4 70 60.0
AL8G37880 Arabidopsis lyrata HOM05D004709 ORTHO05D005669 1.1e-15 86.7 82 50.0
AT5G61220 Arabidopsis thaliana HOM05D004709 ORTHO05D005669 1.4e-15 86.3 82 50.0
BcaC06g33217 Brassica carinata HOM05D004709 ORTHO05D005669 1.9e-15 85.9 79 50.6
C07p44900 Brassica napus HOM05D004709 ORTHO05D005669 3.2e-15 85.1 79 50.6
BolC7t45013H Brassica oleracea HOM05D004709 ORTHO05D005669 3.2e-15 85.1 79 50.6
CARHR274970 Cardamine hirsuta HOM05D004709 ORTHO05D005669 3.2e-15 85.1 82 47.6
Sp2g24450 Schrenkiella parvula HOM05D004709 ORTHO05D005669 4.2e-15 84.7 80 48.8
A02p41520 Brassica napus HOM05D004709 ORTHO05D005669 7.1e-15 84.0 79 49.4
A03p46850 Brassica napus HOM05D004709 ORTHO05D005669 7.1e-15 84.0 79 49.4
BraA02t09093Z Brassica rapa HOM05D004709 ORTHO05D005669 9.3e-15 83.6 79 49.4
Carub.0008s2188 Capsella rubella HOM05D004709 ORTHO05D005669 9.3e-15 83.6 82 47.6
Pp3c9_6850 Physcomitrium patens HOM05D004709 ORTHO05D005669 9.3e-15 83.6 83 49.4
BcaC01g01257 Brassica carinata HOM05D004709 ORTHO05D005669 1.6e-14 82.8 79 49.4
BolC3t21308H Brassica oleracea HOM05D004709 ORTHO05D005669 1.6e-14 82.8 79 49.4
BcaC07g40932 Brassica carinata HOM05D004709 ORTHO05D005669 2.1e-14 82.4 79 48.1
C08p39260 Brassica napus HOM05D004709 ORTHO05D005669 2.1e-14 82.4 79 48.1
AUR62021597 Chenopodium quinoa HOM05D004709 ORTHO05D005669 3.5e-14 81.6 71 54.9
BcaC06g33172 Brassica carinata HOM05D004709 ORTHO05D005669 4.6e-14 81.3 72 51.4
BraA03t13805Z Brassica rapa HOM05D004709 ORTHO05D005669 4.6e-14 81.3 79 46.8
C03p89860 Brassica napus HOM05D004709 ORTHO05D005669 6.0e-14 80.9 79 49.4
C07p56170 Brassica napus HOM05D004709 ORTHO05D005669 7.9e-14 80.5 79 48.1
Cre08.g382850 Chlamydomonas reinhardtii HOM05D004709 ORTHO05D005669 1.3e-13 79.7 82 43.9
BcaC03g18433 Brassica carinata HOM05D004709 ORTHO05D005669 1.8e-13 79.3 79 48.1
C02p63420 Brassica napus HOM05D004709 ORTHO05D005669 1.8e-13 79.3 79 48.1
BolC2t12409H Brassica oleracea HOM05D004709 ORTHO05D005669 1.8e-13 79.3 79 48.1
BolC6t39173H Brassica oleracea HOM05D004709 ORTHO05D005669 2.3e-13 79.0 79 48.1
A03p02360 Brassica napus HOM05D004709 ORTHO05D005669 3.0e-13 78.6 78 47.4
C06p42660 Brassica napus HOM05D004709 ORTHO05D005669 3.0e-13 78.6 79 48.1
Atru.chr9.371 Acer truncatum HOM05D004709 ORTHO05D005669 5.1e-13 77.8 80 50.0
CSS0011072 Camellia sinensis var. sinensis HOM05D004709 ORTHO05D005669 1.1e-12 76.6 59 61.0
Carub.0006s3376 Capsella rubella HOM05D004709 ORTHO05D005669 5.7e-12 74.3 75 50.7
PRCOL_00002203 Prasinoderma coloniale HOM05D004709 ORTHO05D005669 9.7e-12 73.6 77 48.1
SMO174G0212 Selaginella moellendorffii HOM05D004709 ORTHO05D005669 6.3e-11 70.9 82 45.1
C05p13760 Brassica napus HOM05D004709 ORTHO05D005669 8.2e-11 70.5 72 48.6
BolC5t30114H Brassica oleracea HOM05D004709 ORTHO05D005669 8.2e-11 70.5 72 48.6
BcaC05g25635 Brassica carinata HOM05D004709 ORTHO05D005669 1.1e-10 70.1 72 48.6
BraA07t31299Z Brassica rapa HOM05D004709 ORTHO05D005669 2.4e-10 68.9 72 47.2
Sabra09G0061800 Salix brachista HOM05D004709 ORTHO05D005669 4.1e-10 68.2 53 64.2
unitig_37.g12784 Utricularia gibba HOM05D004709 ORTHO05D005669 3.8e-08 61.6 59 54.2
MCO16G339 Micromonas commoda HOM05D004709 ORTHO05D005669 6.5e-08 60.8 86 38.4
Cfa024147 Carpinus fangiana HOM05D004709 ORTHO05D005669 1.1e-07 60.1 81 39.5
CARHR099960 Cardamine hirsuta HOM05D004709 ORTHO05D005669 9.3e-07 57.0 64 40.6
CDE02G0474 Ceratophyllum demersum HOM05D004709 ORTHO05D005669 4.6e-06 54.7 38 65.8


User provided reference genes

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