Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_06791_v3 Cicer arietinum L. HOM05D004824 ORTHO05D003903 1.2e-244 850.1 726 100.0
TPR.G4149 Trifolium pratense HOM05D004824 ORTHO05D003903 8.4e-68 262.7 189 73.0
TPR.G25560 Trifolium pratense HOM05D004824 ORTHO05D003903 1.1e-67 262.3 184 74.5
Psat3g199520 Pisum sativum HOM05D004824 ORTHO05D003903 9.3e-67 259.2 482 78.6
Medtr7g011500 Medicago truncatula HOM05D004824 ORTHO05D003903 2.2e-60 238.0 188 69.1
Medtr3g091500 Medicago truncatula HOM05D004824 ORTHO05D003903 2.2e-52 211.5 192 60.9
TPR.G25583 Trifolium pratense HOM05D004824 ORTHO05D003903 2.7e-50 204.5 192 61.5
TPR.G33412 Trifolium pratense HOM05D004824 ORTHO05D003903 3.0e-49 201.1 213 55.9
Lj1g0019375 Lotus japonicus HOM05D004824 ORTHO05D003903 9.0e-46 189.5 200 54.0
Lj1g0000290 Lotus japonicus HOM05D004824 ORTHO05D003903 7.6e-45 186.4 190 54.7
Lj1g0015996 Lotus japonicus HOM05D000005 ORTHO05D000012 7.6e-45 186.4 189 56.6
arahy.Tifrunner.gnm1.ann1.X6IIW5 Arachis hypogaea HOM05D004824 ORTHO05D003903 7.4e-40 169.9 166 54.2
Lalb_Chr10g0093361 Lupinus albus HOM05D004824 ORTHO05D003903 1.7e-39 168.7 189 52.4
Glyma.05G060900 Glycine max HOM05D004824 ORTHO05D003903 3.7e-39 167.5 179 53.6
arahy.Tifrunner.gnm1.ann1.SR7DDI Arachis hypogaea HOM05D004824 ORTHO05D003903 1.8e-38 165.2 202 48.0
arahy.Tifrunner.gnm1.ann1.XC7PBP Arachis hypogaea HOM05D004824 ORTHO05D003903 5.3e-38 163.7 162 54.3
VMungo1383G0602 Vigna mungo HOM05D004824 ORTHO05D003903 2.1e-34 151.8 180 51.7
Phvul.008G038900 Phaseolus vulgaris HOM05D004824 ORTHO05D003903 4.7e-34 150.6 184 51.1
RcHm_v2.0_Chr5g0022931 Rosa chinensis HOM05D004824 ORTHO05D003903 3.9e-33 147.5 215 40.5
VMungo0251G2839 Vigna mungo HOM05D004824 ORTHO05D003903 6.7e-33 146.7 176 50.6
Glyma.07G217750 Glycine max HOM05D004824 ORTHO05D003903 9.7e-32 142.9 155 52.3
Rhsim04G0218400 Rhododendron simsii HOM05D004020 ORTHO05D004735 1.4e-30 139.0 147 47.6
Actinidia04364 Actinidia chinensis HOM05D004824 ORTHO05D003903 4.1e-30 137.5 151 47.0
ClCG06G012000 Citrullus lanatus HOM05D004824 ORTHO05D003903 4.1e-30 137.5 189 40.7
Sopen05g007720 Solanum pennellii HOM05D004824 ORTHO05D003903 9.1e-30 136.3 193 41.5
vmacro09539 Vaccinium macrocarpon HOM05D004824 ORTHO05D003903 1.2e-29 136.0 152 47.4
Dinv16084 Davidia involucrata HOM05D004824 ORTHO05D003903 1.5e-29 135.6 165 42.4
CAN.G964.21 Capsicum annuum HOM05D004824 ORTHO05D003903 2.6e-29 134.8 198 39.4
Hma1.2p1_0098F.1_g048160 Hydrangea macrophylla HOM05D004824 ORTHO05D003903 3.4e-29 134.4 210 39.5
Migut.D01549 Erythranthe guttata HOM05D004824 ORTHO05D003903 4.5e-29 134.0 187 40.6
MD10G1219600 Malus domestica HOM05D004824 ORTHO05D003903 4.5e-29 134.0 197 40.6
CSS0029730 Camellia sinensis var. sinensis HOM05D004824 ORTHO05D003903 5.9e-29 133.7 136 50.7
Duzib147G0012 Durio zibethinus HOM05D004824 ORTHO05D003903 5.9e-29 133.7 190 38.9
CSS0000296 Camellia sinensis var. sinensis HOM05D004824 ORTHO05D003903 7.7e-29 133.3 158 46.2
Sed0004559 Sechium edule HOM05D004824 ORTHO05D003903 1.7e-28 132.1 189 40.2
CsaV3_1G028470 Cucumis sativus L. HOM05D004824 ORTHO05D003903 2.9e-28 131.3 190 40.0
Nitab4.5_0000391g0190 Nicotiana tabacum HOM05D004824 ORTHO05D003903 5.0e-28 130.6 162 42.6
Peaxi162Scf00222g00211 Petunia axillaris HOM05D004824 ORTHO05D003903 5.0e-28 130.6 146 45.2
Solyc05g012920.3 Solanum lycopersicum HOM05D004824 ORTHO05D003903 5.0e-28 130.6 186 41.4
Prupe.4G124300 Prunus persica HOM05D004824 ORTHO05D003903 8.5e-28 129.8 191 38.7
MELO3C010266.2 Cucumis melo HOM05D004824 ORTHO05D003903 1.4e-27 129.0 190 38.9
FvH4_3g13690 Fragaria vesca HOM05D004824 ORTHO05D003903 4.2e-27 127.5 180 39.4
FAN11G3130 Fragaria x ananassa HOM05D004824 ORTHO05D003903 4.2e-27 127.5 180 39.4
PGSC0003DMG400028391 Solanum tuberosum HOM05D004824 ORTHO05D003903 4.2e-27 127.5 175 42.9
Thecc.01G121800 Theobroma cacao HOM05D004824 ORTHO05D003903 4.2e-27 127.5 177 41.2
SalBow7G1004 Salvia bowleyana HOM05D004824 ORTHO05D003903 7.2e-27 126.7 170 40.6
FAN25G3679 Fragaria x ananassa HOM05D004824 ORTHO05D003903 9.4e-27 126.3 176 39.8
MD05G1241200 Malus domestica HOM05D004824 ORTHO05D003903 1.2e-26 125.9 192 39.1
vmacro04677 Vaccinium macrocarpon HOM05D004824 ORTHO05D003903 1.6e-26 125.6 140 47.1
QL05p080937 Quercus lobata HOM05D004824 ORTHO05D003903 3.6e-26 124.4 173 39.3
EL10Ac8g19216 Beta vulgaris HOM05D004824 ORTHO05D003903 4.7e-26 124.0 197 38.1
Rhsim04G0218500 Rhododendron simsii HOM05D004824 ORTHO05D003903 4.7e-26 124.0 158 43.0
Gohir.A05G388900 Gossypium hirsutum HOM05D004824 ORTHO05D003903 1.8e-25 122.1 211 35.1
Sc12g0010940 Simmondsia chinensis HOM05D004824 ORTHO05D003903 3.0e-25 121.3 156 42.3
Gorai.012G030300 Gossypium raimondii HOM05D004824 ORTHO05D003903 6.7e-25 120.2 144 42.4
THA.LOC104816942 Tarenaya hassleriana HOM05D004824 ORTHO05D003903 6.7e-25 120.2 153 39.2
Cpa.g.sc743.5 Carica papaya HOM05D004824 ORTHO05D003903 8.8e-25 119.8 157 38.2
DCAR_030408 Daucus carota HOM05D004824 ORTHO05D003903 1.5e-24 119.0 170 38.8
Gorai.N017300 Gossypium raimondii HOM05D004824 ORTHO05D003903 2.6e-24 118.2 179 37.4
Cc02_g09320 Coffea canephora HOM05D004824 ORTHO05D003903 3.3e-24 117.9 139 44.6
TWI79G0695 Tripterygium wilfordii HOM05D004824 ORTHO05D003903 3.3e-24 117.9 165 41.2
Ciclev10011094m.g Citrus clementina HOM05D004824 ORTHO05D003903 4.4e-24 117.5 158 41.8
Gohir.D04G027600 Gossypium hirsutum HOM05D004824 ORTHO05D003903 4.4e-24 117.5 179 37.4
Hund12341 Selenicereus undatus HOM05D004824 ORTHO05D003903 5.7e-24 117.1 183 37.7
CiPaw.15G110500 Carya illinoinensis HOM05D004824 ORTHO05D003903 7.4e-24 116.7 177 39.0
Gohir.D04G027800 Gossypium hirsutum HOM05D004824 ORTHO05D003903 9.7e-24 116.3 179 36.3
GSVIVG01015849001 Vitis vinifera HOM05D004824 ORTHO05D003903 2.2e-23 115.2 148 41.9
Haze_18457 Corylus avellana HOM05D004824 ORTHO05D003903 2.8e-23 114.8 190 37.9
Manes.10G060400 Manihot esculenta HOM05D004824 ORTHO05D003903 2.8e-23 114.8 152 38.2
Aa31LG5G8990 Aethionema arabicum HOM05D004824 ORTHO05D003903 3.7e-23 114.4 160 36.9
Medtr7g011520 Medicago truncatula HOM05D004824 ORTHO05D003903 6.3e-23 113.6 103 58.3
CANSAT11G2445 Cannabis sativa HOM05D004824 ORTHO05D003903 1.1e-22 112.8 165 35.8
HanXRQChr13g0425241 Helianthus annuus HOM05D004824 ORTHO05D003903 1.1e-22 112.8 228 33.3
TAR623G1477 Trochodendron aralioides HOM05D004824 ORTHO05D003903 1.4e-22 112.5 143 42.0
MSTRG.2666 Avicennia marina HOM05D004824 ORTHO05D003903 2.4e-22 111.7 151 40.4
VMungo0251G3577 Vigna mungo HOM05D004824 ORTHO05D003903 5.3e-22 110.5 179 42.5
FAN16G0917 Fragaria x ananassa HOM05D001160 ORTHO05D001092 2.0e-21 108.6 126 44.4
HanXRQChr17g0540701 Helianthus annuus HOM05D004824 ORTHO05D003903 2.6e-21 108.2 151 37.1
CANSAT21G1575 Cannabis sativa HOM05D004824 ORTHO05D003903 1.0e-20 106.3 216 33.8
TPR.G33705 Trifolium pratense HOM05D002450 ORTHO05D002953 2.9e-20 104.8 108 54.6
Nn2g15691 Nelumbo nucifera HOM05D004824 ORTHO05D003903 3.8e-20 104.4 179 39.1
AUR62008612 Chenopodium quinoa HOM05D004824 ORTHO05D003903 5.0e-20 104.0 174 36.2
Sp4g08720 Schrenkiella parvula HOM05D004824 ORTHO05D003903 5.0e-20 104.0 170 37.6
TWI63G0852 Tripterygium wilfordii HOM05D004824 ORTHO05D003903 5.0e-20 104.0 142 41.5
Lsat_1_v5_gn_8_33440 Lactuca sativa HOM05D004824 ORTHO05D003903 1.9e-19 102.1 189 33.3
Manes.02G087700 Manihot esculenta HOM05D004824 ORTHO05D003903 2.5e-19 101.7 161 37.3
Lsat_1_v5_gn_0_9380 Lactuca sativa HOM05D004824 ORTHO05D003903 3.2e-19 101.3 171 36.8
Thhalv10001906m.g Eutrema salsugineum HOM05D004824 ORTHO05D003903 4.2e-19 100.9 200 33.5
Carub.0004s0722 Capsella rubella HOM05D004824 ORTHO05D003903 2.1e-18 98.6 157 36.9
Ciclev10014253m.g Citrus clementina HOM05D004824 ORTHO05D003903 2.1e-18 98.6 157 37.6
PGR142G1633 Punica granatum HOM05D004824 ORTHO05D003903 2.1e-18 98.6 146 39.7
BcaC02g10842 Brassica carinata HOM05D004824 ORTHO05D003903 1.0e-17 96.3 202 33.2
BolC4t23963H Brassica oleracea HOM05D004824 ORTHO05D003903 1.0e-17 96.3 198 33.8
BraA07t29506Z Brassica rapa HOM05D004824 ORTHO05D003903 1.0e-17 96.3 191 34.6
Nitab4.5_0008978g0030 Nicotiana tabacum HOM05D004824 ORTHO05D003903 1.0e-17 96.3 107 47.7
C04p24590 Brassica napus HOM05D004824 ORTHO05D003903 1.8e-17 95.5 202 33.2
AUR62033164 Chenopodium quinoa HOM05D004824 ORTHO05D003903 2.3e-17 95.1 174 34.5
A07p17870 Brassica napus HOM05D004824 ORTHO05D003903 4.0e-17 94.4 190 33.7
Aqoxy1G00124 Aquilegia oxysepala HOM05D004824 ORTHO05D003903 7.5e-16 90.1 203 33.0
CDE04G1389 Ceratophyllum demersum HOM05D004824 ORTHO05D003903 9.7e-16 89.7 156 36.5
AUR62033969 Chenopodium quinoa HOM05D004824 ORTHO05D003903 9.7e-16 89.7 183 33.9
Sabra04G0044400 Salix brachista HOM05D004824 ORTHO05D003903 1.3e-15 89.4 199 31.7
AL4G19980 Arabidopsis lyrata HOM05D004824 ORTHO05D003903 1.7e-15 89.0 190 31.6
Ah.10g031450 Amaranthus hybridus HOM05D004824 ORTHO05D003903 2.8e-15 88.2 109 37.6
HanXRQChr12g0366191 Helianthus annuus HOM05D004824 ORTHO05D003903 2.8e-15 88.2 179 31.3
MBI06_g07794_MAGBIO Magnolia biondii HOM05D004824 ORTHO05D003903 2.8e-15 88.2 164 32.3
ATR0807G095 Amborella trichopoda HOM05D004824 ORTHO05D003903 4.8e-15 87.4 220 32.3
arahy.Tifrunner.gnm1.ann1.F7MB9I Arachis hypogaea HOM05D004824 ORTHO05D003903 4.8e-15 87.4 220 49.5
Potri.004G066600 Populus trichocarpa HOM05D004824 ORTHO05D003903 4.8e-15 87.4 179 33.0
AT2G26790 Arabidopsis thaliana HOM05D004824 ORTHO05D003903 4.1e-14 84.3 186 30.1
CARHR014190 Cardamine hirsuta HOM05D004824 ORTHO05D003903 1.6e-13 82.4 215 27.0
Psat3g199560 Pisum sativum HOM05D004824 ORTHO05D003903 4.5e-13 80.9 87 55.2
SHI24599 Sapria himalayana HOM05D008459 ORTHO05D003903 7.7e-13 80.1 253 29.6
Aa31LG5G1800 Aethionema arabicum HOM05D004824 ORTHO05D007466 5.0e-12 77.4 168 27.4
AL1G25600 Arabidopsis lyrata HOM05D004824 ORTHO05D003903 9.4e-11 73.2 191 26.7
Thhalv10009488m.g Eutrema salsugineum HOM05D004824 ORTHO05D031114 2.1e-10 72.0 221 49.8
Thhalv10009810m.g Eutrema salsugineum HOM05D004824 ORTHO05D017526 2.1e-10 72.0 235 46.0
AT1G13800 Arabidopsis thaliana HOM05D004824 ORTHO05D003903 2.7e-10 71.6 159 28.9
ECA246G3641 Erigeron canadensis HOM05D005906 ORTHO05D007359 8.0e-10 70.1 246 44.3
arahy.Tifrunner.gnm1.ann1.0Z8MR5 Arachis hypogaea HOM05D000161 ORTHO05D003903 2.3e-09 68.6 222 47.3
TPR.G27632 Trifolium pratense HOM05D004824 ORTHO05D003903 6.8e-09 67.0 76 51.3
Lsat_1_v5_gn_1_52160 Lactuca sativa HOM05D004824 ORTHO05D003903 8.8e-09 66.6 178 28.1
HanXRQChr13g0425261 Helianthus annuus HOM05D004824 ORTHO05D003903 1.2e-08 66.2 249 37.8
BcaC05g25286 Brassica carinata HOM05D004824 ORTHO05D003903 3.4e-08 64.7 148 31.1
C05p11650 Brassica napus HOM05D004824 ORTHO05D003903 3.4e-08 64.7 148 31.1
BolC5t29912H Brassica oleracea HOM05D004824 ORTHO05D003903 3.4e-08 64.7 148 31.1
BraA06t24177Z Brassica rapa HOM05D004824 ORTHO05D003903 3.4e-08 64.7 140 32.1
Carub.0001s1352 Capsella rubella HOM05D004824 ORTHO05D017526 4.4e-08 64.3 153 30.7
A06p09890 Brassica napus HOM05D004824 ORTHO05D003903 5.7e-08 63.9 156 30.1
BcaB03g12921 Brassica carinata HOM05D007639 ORTHO05D009509 7.5e-08 63.5 195 28.7
Glyma.18G262450 Glycine max HOM05D004824 ORTHO05D003903 9.8e-08 63.2 49 67.3
ECA246G0928 Erigeron canadensis HOM05D004824 ORTHO05D003903 2.8e-07 61.6 104 34.6
FAN27G1492 Fragaria x ananassa HOM05D000424 ORTHO05D000355 3.7e-07 61.2 87 34.5
Lsat_1_v5_gn_1_54320 Lactuca sativa HOM05D004824 ORTHO05D003903 3.7e-07 61.2 198 27.8
Oeu060442.1 Olea europaea HOM05D004824 ORTHO05D003903 3.7e-07 61.2 85 38.8
ECA233G4957 Erigeron canadensis HOM05D004824 ORTHO05D003903 6.3e-07 60.5 105 31.4
FvH4_2g37970 Fragaria vesca HOM05D000424 ORTHO05D000355 8.3e-07 60.1 87 33.3
FAN20G0922 Fragaria x ananassa HOM05D000424 ORTHO05D000355 8.3e-07 60.1 87 33.3
Actinidia29766 Actinidia chinensis HOM05D000424 ORTHO05D000355 1.1e-06 59.7 87 33.3
Aqoxy6G01988 Aquilegia oxysepala HOM05D000424 ORTHO05D000355 1.4e-06 59.3 87 32.2
FvH4_1g18320 Fragaria vesca HOM05D000424 ORTHO05D000355 1.4e-06 59.3 86 32.6
FAN19G2437 Fragaria x ananassa HOM05D000424 ORTHO05D000355 1.4e-06 59.3 86 32.6
FAN23G2322 Fragaria x ananassa HOM05D000424 ORTHO05D000355 1.4e-06 59.3 86 32.6
FAN26G1072 Fragaria x ananassa HOM05D000424 ORTHO05D000355 1.4e-06 59.3 86 32.6
Glyma.07G217800 Glycine max HOM05D004824 ORTHO05D003903 1.4e-06 59.3 33 75.8
FAN15G0476 Fragaria x ananassa HOM05D000424 ORTHO05D000355 1.8e-06 58.9 87 33.3
Prupe.1G359600 Prunus persica HOM05D000424 ORTHO05D000355 1.8e-06 58.9 87 32.2
Aa31LG7G4660 Aethionema arabicum HOM05D000424 ORTHO05D000355 2.4e-06 58.5 88 35.2
RcHm_v2.0_Chr6g0303651 Rosa chinensis HOM05D000424 ORTHO05D000355 2.4e-06 58.5 87 32.2
CANSAT01G3161 Cannabis sativa HOM05D000424 ORTHO05D000355 3.1e-06 58.2 87 33.3
BcaB03g11740 Brassica carinata HOM05D000162 ORTHO05D003288 4.1e-06 57.8 78 33.3
DCAR_030127 Daucus carota HOM05D000424 ORTHO05D000355 4.1e-06 57.8 87 32.2
Medtr8g071300 Medicago truncatula HOM05D000424 ORTHO05D000355 4.1e-06 57.8 86 30.2
Sp1g12140 Schrenkiella parvula HOM05D004824 ORTHO05D017526 4.1e-06 57.8 176 27.3
Cpa.g.sc129.66 Carica papaya HOM05D000424 ORTHO05D000355 7.0e-06 57.0 85 31.8
DCAR_030120 Daucus carota HOM05D000424 ORTHO05D000355 7.0e-06 57.0 87 32.2
vmacro05074 Vaccinium macrocarpon HOM05D000162 ORTHO05D000090 7.0e-06 57.0 84 35.7
vmacro13800 Vaccinium macrocarpon HOM05D000162 ORTHO05D000090 7.0e-06 57.0 91 33.0
Migut.L00219 Erythranthe guttata HOM05D000424 ORTHO05D000355 9.1e-06 56.6 85 32.9
SalBow7G3167 Salvia bowleyana HOM05D000424 ORTHO05D000355 9.1e-06 56.6 87 36.8


User provided reference genes

Program Settings