Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_06515_v3 Cicer arietinum L. HOM05D005538 ORTHO05D007055 2.2e-75 285.4 130 100.0
Medtr7g005440 Medicago truncatula HOM05D005538 ORTHO05D007055 1.3e-64 249.6 128 88.3
TPR.G15629 Trifolium pratense HOM05D005538 ORTHO05D007055 1.9e-63 245.7 134 84.3
Psat3g208320 Pisum sativum HOM05D005538 ORTHO05D007055 5.5e-63 244.2 127 86.6
Glyma.08G360100 Glycine max HOM05D005538 ORTHO05D007055 2.7e-62 241.9 139 78.4
VMungo1383G2546 Vigna mungo HOM05D005538 ORTHO05D007055 4.7e-62 241.1 131 83.2
Glyma.18G301900 Glycine max HOM05D005538 ORTHO05D007055 3.4e-60 235.0 139 75.5
Phvul.008G000500 Phaseolus vulgaris HOM05D005538 ORTHO05D007055 9.8e-60 233.4 134 78.4
Lj1g0020005 Lotus japonicus HOM05D005538 ORTHO05D007055 1.8e-58 229.2 132 78.8
Cfa009412 Carpinus fangiana HOM05D005538 ORTHO05D007055 4.5e-57 224.6 133 74.4
CiPaw.05G104000 Carya illinoinensis HOM05D005538 ORTHO05D007055 7.7e-57 223.8 133 74.4
Haze_12470 Corylus avellana HOM05D005538 ORTHO05D007055 1.3e-56 223.0 133 73.7
Potri.001G061900 Populus trichocarpa HOM05D005538 ORTHO05D007055 3.3e-55 218.4 136 71.3
Sabra03G0121100 Salix brachista HOM05D005538 ORTHO05D007055 4.2e-55 218.0 136 72.8
Potri.003G165900 Populus trichocarpa HOM05D005538 ORTHO05D007055 5.5e-55 217.6 133 72.2
Actinidia22132 Actinidia chinensis HOM05D005538 ORTHO05D007055 7.2e-55 217.2 126 74.6
Duzib052G1117 Durio zibethinus HOM05D005538 ORTHO05D007055 1.2e-54 216.5 129 74.4
Actinidia30605 Actinidia chinensis HOM05D005538 ORTHO05D007055 1.6e-54 216.1 126 73.8
CiPaw.06G107500 Carya illinoinensis HOM05D005538 ORTHO05D007055 2.1e-54 215.7 131 72.5
Dinv06880 Davidia involucrata HOM05D005538 ORTHO05D007055 2.1e-54 215.7 126 73.8
Hma1.2p1_0459F.1_g157240 Hydrangea macrophylla HOM05D005538 ORTHO05D007055 3.6e-54 214.9 121 75.2
Cc11_g17450 Coffea canephora HOM05D005538 ORTHO05D007055 4.7e-54 214.5 127 73.2
CANSAT56G2313 Cannabis sativa HOM05D005538 ORTHO05D007055 1.8e-53 212.6 129 73.6
Lj3A1076T34 Lonicera japonica HOM05D005538 ORTHO05D007055 1.8e-53 212.6 121 75.2
Oeu003281.1 Olea europaea HOM05D005538 ORTHO05D007055 1.8e-53 212.6 125 71.2
Manes.08G103200 Manihot esculenta HOM05D005538 ORTHO05D007055 2.3e-53 212.2 135 68.1
TAR622G0886 Trochodendron aralioides HOM05D005538 ORTHO05D007055 3.0e-53 211.8 121 76.0
QL03p050357 Quercus lobata HOM05D005538 ORTHO05D007055 4.0e-53 211.5 132 71.2
CSS0040217 Camellia sinensis var. sinensis HOM05D005538 ORTHO05D007055 5.2e-53 211.1 125 73.6
Hund25495 Selenicereus undatus HOM05D005538 ORTHO05D007055 5.2e-53 211.1 116 78.4
TWI18G0823 Tripterygium wilfordii HOM05D005538 ORTHO05D007055 8.9e-53 210.3 133 69.2
Peaxi162Scf00220g00119 Petunia axillaris HOM05D005538 ORTHO05D007055 2.0e-52 209.1 127 71.7
SalBow2G1516 Salvia bowleyana HOM05D005538 ORTHO05D007055 2.0e-52 209.1 116 75.9
Duzib248G0674 Durio zibethinus HOM05D005538 ORTHO05D007055 3.4e-52 208.4 129 72.1
Thecc.02G196400 Theobroma cacao HOM05D005538 ORTHO05D007055 3.4e-52 208.4 129 71.3
GSVIVG01000954001 Vitis vinifera HOM05D005538 ORTHO05D007055 4.4e-52 208.0 112 76.8
Migut.K01033 Erythranthe guttata HOM05D005538 ORTHO05D007055 5.7e-52 207.6 128 68.0
TAR371G0765 Trochodendron aralioides HOM05D005538 ORTHO05D007055 7.5e-52 207.2 121 73.6
AUR62028865 Chenopodium quinoa HOM05D005538 ORTHO05D007055 1.3e-51 206.5 116 75.0
Gohir.A03G151200 Gossypium hirsutum HOM05D005538 ORTHO05D007055 1.7e-51 206.1 135 67.4
Gohir.A12G140500 Gossypium hirsutum HOM05D005538 ORTHO05D007055 1.7e-51 206.1 128 71.1
Gorai.005G195900 Gossypium raimondii HOM05D005538 ORTHO05D007055 1.7e-51 206.1 135 67.4
Gorai.008G156500 Gossypium raimondii HOM05D005538 ORTHO05D007055 1.7e-51 206.1 128 71.1
Manes.09G185800 Manihot esculenta HOM05D005538 ORTHO05D007055 1.7e-51 206.1 136 67.6
vmacro22631 Vaccinium macrocarpon HOM05D005538 ORTHO05D007055 1.7e-51 206.1 121 73.6
Ciclev10033047m.g Citrus clementina HOM05D005538 ORTHO05D007055 2.2e-51 205.7 133 69.2
Gohir.D02G174200 Gossypium hirsutum HOM05D005538 ORTHO05D007055 2.2e-51 205.7 135 67.4
MELO3C022346.2 Cucumis melo HOM05D005538 ORTHO05D007055 2.8e-51 205.3 129 70.5
Gohir.D12G145100 Gossypium hirsutum HOM05D005538 ORTHO05D007055 3.7e-51 204.9 116 75.0
PGSC0003DMG400030010 Solanum tuberosum HOM05D005538 ORTHO05D007055 3.7e-51 204.9 126 70.6
COL.COLO4_34942 Corchorus olitorius HOM05D005538 ORTHO05D007055 4.9e-51 204.5 130 66.2
CsaV3_6G007860 Cucumis sativus L. HOM05D005538 ORTHO05D007055 6.3e-51 204.1 129 70.5
THA.LOC104825475 Tarenaya hassleriana HOM05D005538 ORTHO05D007055 6.3e-51 204.1 133 67.7
TAR629G0377 Trochodendron aralioides HOM05D005538 ORTHO05D007055 1.8e-50 202.6 121 71.9
Eucgr.B03544 Eucalyptus grandis HOM05D005538 ORTHO05D007055 2.4e-50 202.2 133 67.7
EL10Ac6g13582 Beta vulgaris HOM05D005538 ORTHO05D007055 4.1e-50 201.4 121 71.1
Nn3g16327 Nelumbo nucifera HOM05D005538 ORTHO05D007055 5.4e-50 201.1 138 65.9
MSTRG.469 Avicennia marina HOM05D005538 ORTHO05D007055 1.6e-49 199.5 121 73.6
HanXRQChr17g0540491 Helianthus annuus HOM05D005538 ORTHO05D007055 1.6e-49 199.5 139 62.6
MD16G1126800 Malus domestica HOM05D005538 ORTHO05D007055 1.6e-49 199.5 133 65.4
SGA_v2.0_scaffold80G25945 Striga asiatica HOM05D005538 ORTHO05D007055 2.7e-49 198.7 121 71.9
Gohir.D01G019700 Gossypium hirsutum HOM05D005538 ORTHO05D007055 3.5e-49 198.4 133 66.9
Solyc01g009780.3 Solanum lycopersicum HOM05D005538 ORTHO05D007055 3.5e-49 198.4 126 69.0
Sopen01g005330 Solanum pennellii HOM05D005538 ORTHO05D007055 3.5e-49 198.4 126 69.0
A02p01730 Brassica napus HOM05D005538 ORTHO05D007055 4.5e-49 198.0 133 66.9
BraA02t05152Z Brassica rapa HOM05D005538 ORTHO05D007055 4.5e-49 198.0 133 66.9
Prupe.1G219100 Prunus persica HOM05D005538 ORTHO05D007055 4.5e-49 198.0 133 66.2
unitig_8.g3121 Utricularia gibba HOM05D005538 ORTHO05D007055 4.5e-49 198.0 112 74.1
CAN.G1277.4 Capsicum annuum HOM05D005538 ORTHO05D007055 5.9e-49 197.6 121 71.9
Gorai.002G022100 Gossypium raimondii HOM05D005538 ORTHO05D007055 5.9e-49 197.6 133 66.9
MBI07_g37483_MAGBIO Magnolia biondii HOM05D005538 ORTHO05D007055 5.9e-49 197.6 124 67.7
Ah.03g135760 Amaranthus hybridus HOM05D005538 ORTHO05D007055 7.8e-49 197.2 121 68.6
Aqoxy3G01758 Aquilegia oxysepala HOM05D005538 ORTHO05D007055 7.8e-49 197.2 114 71.9
CDE05G1586 Ceratophyllum demersum HOM05D005538 ORTHO05D007055 1.0e-48 196.8 116 71.6
C02p05970 Brassica napus HOM05D005538 ORTHO05D007055 1.3e-48 196.4 133 66.9
BolC2t06540H Brassica oleracea HOM05D005538 ORTHO05D007055 1.3e-48 196.4 133 66.9
ClCG06G001820 Citrullus lanatus HOM05D005538 ORTHO05D007055 1.3e-48 196.4 133 66.2
CDE05G2048 Ceratophyllum demersum HOM05D005538 ORTHO05D007055 1.7e-48 196.1 116 70.7
ATR0582G064 Amborella trichopoda HOM05D005538 ORTHO05D007055 2.3e-48 195.7 143 62.2
BcaNung01169 Brassica carinata HOM05D005538 ORTHO05D007055 2.3e-48 195.7 133 66.9
Gohir.A01G021300 Gossypium hirsutum HOM05D005538 ORTHO05D007055 2.3e-48 195.7 133 66.2
Nitab4.5_0001600g0070 Nicotiana tabacum HOM05D005538 ORTHO05D007055 2.9e-48 195.3 118 71.2
MD13G1126300 Malus domestica HOM05D005538 ORTHO05D007055 3.9e-48 194.9 133 65.4
AT5G13190 Arabidopsis thaliana HOM05D005538 ORTHO05D007055 5.0e-48 194.5 133 66.9
HanXRQChr06g0175181 Helianthus annuus HOM05D005538 ORTHO05D007055 5.0e-48 194.5 147 59.9
Carub.0006s1136 Capsella rubella HOM05D005538 ORTHO05D007055 6.6e-48 194.1 133 66.9
ECA246G0794 Erigeron canadensis HOM05D005538 ORTHO05D007055 6.6e-48 194.1 121 69.4
Thhalv10014995m.g Eutrema salsugineum HOM05D005538 ORTHO05D007055 1.1e-47 193.4 133 65.4
PSO017G1114 Papaver somniferum HOM05D005538 ORTHO05D007055 1.5e-47 193.0 112 72.3
AL6G23800 Arabidopsis lyrata HOM05D005538 ORTHO05D007055 1.9e-47 192.6 133 66.2
CARHR200280 Cardamine hirsuta HOM05D005538 ORTHO05D007055 1.9e-47 192.6 140 64.3
PSO478G3672 Papaver somniferum HOM05D005538 ORTHO05D007055 2.5e-47 192.2 112 72.3
Sed0021477 Sechium edule HOM05D005538 ORTHO05D007055 2.5e-47 192.2 133 66.9
BraA10t44563Z Brassica rapa HOM05D005538 ORTHO05D007055 4.3e-47 191.4 133 65.4
Sp6g30790 Schrenkiella parvula HOM05D005538 ORTHO05D007055 4.3e-47 191.4 133 65.4
C09p63880 Brassica napus HOM05D005538 ORTHO05D007055 7.3e-47 190.7 134 66.4
BolC9t59228H Brassica oleracea HOM05D005538 ORTHO05D007055 7.3e-47 190.7 134 66.4
Aa31LG3G14470 Aethionema arabicum HOM05D005538 ORTHO05D007055 2.1e-46 189.1 133 64.7
A10p25020 Brassica napus HOM05D005538 ORTHO05D007055 2.1e-46 189.1 134 65.7
RcHm_v2.0_Chr4g0429351 Rosa chinensis HOM05D005538 ORTHO05D007055 4.7e-46 188.0 126 68.3
FAN07G2678 Fragaria x ananassa HOM05D005538 ORTHO05D007055 1.4e-45 186.4 129 67.4
FAN17G2587 Fragaria x ananassa HOM05D005538 ORTHO05D007055 1.4e-45 186.4 124 69.4
FAN12G2387 Fragaria x ananassa HOM05D005538 ORTHO05D007055 2.3e-45 185.7 130 65.4
Ah.02g131140 Amaranthus hybridus HOM05D005538 ORTHO05D007055 2.0e-44 182.6 127 63.8
Hund28220 Selenicereus undatus HOM05D005538 ORTHO05D007055 1.1e-42 176.8 119 66.4
Hund28225 Selenicereus undatus HOM05D005538 ORTHO05D007055 1.1e-42 176.8 119 66.4
Os02g0515600 Oryza sativa ssp. japonica HOM05D005538 ORTHO05D007055 1.2e-41 173.3 113 65.5
Sc04g0010460 Simmondsia chinensis HOM05D005538 ORTHO05D007055 6.6e-40 167.5 89 78.7
Rhsim12G0021000 Rhododendron simsii HOM05D005538 ORTHO05D007055 1.5e-39 166.4 128 58.6
Atru.chr11.2402 Acer truncatum HOM05D005538 ORTHO05D007055 5.8e-36 154.5 158 50.0
SMO271G0002 Selaginella moellendorffii HOM05D005538 ORTHO05D007055 2.2e-35 152.5 113 59.3
Zm00001eb241880 Zea mays HOM05D005538 ORTHO05D007055 2.7e-33 145.6 130 50.0
FvH4_4g23080 Fragaria vesca HOM05D005538 ORTHO05D007055 7.8e-33 144.1 105 65.7
CBR_g4442 Chara braunii HOM05D005538 ORTHO05D007055 3.9e-32 141.7 113 53.1
AagrBONN_evm.TU.Sc2ySwM_117.1139 Anthoceros agrestis HOM05D005538 ORTHO05D007055 6.6e-32 141.0 111 51.4
Pp3c26_1170 Physcomitrium patens HOM05D005538 ORTHO05D007055 5.6e-31 137.9 113 57.5
TWI75G1796 Tripterygium wilfordii HOM05D005538 ORTHO05D007055 2.8e-30 135.6 89 64.0
AagrBONN_evm.TU.Sc2ySwM_117.1282 Anthoceros agrestis HOM05D005538 ORTHO05D007055 8.9e-29 130.6 133 44.4
HPP92_011548 Vanilla planifolia HOM05D005538 ORTHO05D007055 8.3e-27 124.0 66 75.8
Oeu039177.1 Olea europaea HOM05D005538 ORTHO05D007055 6.6e-24 114.4 59 79.7
Cpa.g.sc123.51 Carica papaya HOM05D005538 ORTHO05D007055 5.6e-23 111.3 54 81.5
Nitab4.5_0007554g0010 Nicotiana tabacum HOM05D007298 ORTHO05D009226 2.1e-17 92.8 44 84.1
SalBow8G4168 Salvia bowleyana HOM05D005538 ORTHO05D007055 1.1e-13 80.5 46 71.7
RcHm_v2.0_Chr4g0404941 Rosa chinensis HOM05D005538 ORTHO05D007055 3.1e-13 79.0 102 43.1
TAR623G0421 Trochodendron aralioides HOM05D004785 ORTHO05D005704 3.1e-13 79.0 56 62.5
DCAR_028448 Daucus carota HOM05D005538 ORTHO05D007055 5.8e-12 74.7 40 77.5
TAR628G0286 Trochodendron aralioides HOM05D000367 ORTHO05D001438 1.3e-11 73.6 55 60.0
TAR629G2749 Trochodendron aralioides HOM05D005538 ORTHO05D007055 2.2e-11 72.8 56 58.9
Lsat_1_v5_gn_6_34980 Lactuca sativa HOM05D005538 ORTHO05D007055 2.9e-11 72.4 61 50.8
TAR623G1654 Trochodendron aralioides HOM05D005538 ORTHO05D007055 5.4e-10 68.2 55 56.4
RcHm_v2.0_Chr1g0337501 Rosa chinensis HOM05D005538 ORTHO05D007055 1.6e-09 66.6 94 39.4
BcaB01g05369 Brassica carinata HOM05D005538 ORTHO05D007055 4.6e-09 65.1 57 57.9
SEGI_11247 Sequoiadendron giganteum HOM05D005538 ORTHO05D007055 7.8e-09 64.3 46 58.7
Hma1.2p1_0365F.1_g136780 Hydrangea macrophylla HOM05D005538 ORTHO05D007055 1.7e-08 63.2 36 72.2
SEGI_18844 Sequoiadendron giganteum HOM05D005538 ORTHO05D007055 1.7e-08 63.2 60 48.3
RcHm_v2.0_Chr5g0057011 Rosa chinensis HOM05D005538 ORTHO05D007055 8.7e-08 60.8 102 33.3
SEGI_29074 Sequoiadendron giganteum HOM05D005538 ORTHO05D012435 8.7e-08 60.8 45 55.6
SEGI_30741 Sequoiadendron giganteum HOM05D005538 ORTHO05D012435 8.7e-08 60.8 45 55.6
SEGI_18352 Sequoiadendron giganteum HOM05D005538 ORTHO05D012435 7.3e-07 57.8 46 52.2


User provided reference genes

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