Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_06514_v3 Cicer arietinum L. HOM05D004760 ORTHO05D006114 3.1e-78 295.0 148 100.0
Ca_08122_v3 Cicer arietinum L. HOM05D004760 ORTHO05D006114 9.8e-40 167.2 98 87.8
Medtr7g083650 Medicago truncatula HOM05D004760 ORTHO05D006114 1.0e-36 157.1 98 81.6
TPR.G21885 Trifolium pratense HOM05D004760 ORTHO05D006114 2.9e-36 155.6 98 82.7
Psat3g094560 Pisum sativum HOM05D004760 ORTHO05D006114 1.9e-35 152.9 98 80.6
CAN.G546.10 Capsicum annuum HOM05D004760 ORTHO05D006114 3.0e-33 145.6 102 72.5
Sopen11g027800 Solanum pennellii HOM05D004760 ORTHO05D006114 3.0e-33 145.6 102 72.5
PGSC0003DMG400008071 Solanum tuberosum HOM05D004760 ORTHO05D006114 3.0e-33 145.6 102 72.5
PGSC0003DMG400008118 Solanum tuberosum HOM05D004760 ORTHO05D006114 8.9e-33 144.1 104 70.2
Nitab4.5_0002033g0060 Nicotiana tabacum HOM05D004760 ORTHO05D006114 1.5e-32 143.3 98 73.5
Nitab4.5_0002186g0070 Nicotiana tabacum HOM05D004760 ORTHO05D006114 1.5e-32 143.3 98 73.5
CiPaw.14G087800 Carya illinoinensis HOM05D004760 ORTHO05D006114 2.0e-32 142.9 102 73.5
PGSC0003DMG400008072 Solanum tuberosum HOM05D004760 ORTHO05D006114 2.6e-32 142.5 102 71.6
Cfa010341 Carpinus fangiana HOM05D004760 ORTHO05D006114 5.8e-32 141.4 102 72.5
Gohir.A03G030600 Gossypium hirsutum HOM05D004760 ORTHO05D006114 7.5e-32 141.0 111 67.6
Gohir.D03G137800 Gossypium hirsutum HOM05D004760 ORTHO05D006114 7.5e-32 141.0 111 67.6
Gorai.003G144700 Gossypium raimondii HOM05D004760 ORTHO05D006114 7.5e-32 141.0 111 67.6
Lj3g0014185 Lotus japonicus HOM05D004760 ORTHO05D006114 7.5e-32 141.0 98 72.4
MD00G1033500 Malus domestica HOM05D004760 ORTHO05D006114 9.8e-32 140.6 102 71.6
Thecc.09G348500 Theobroma cacao HOM05D004760 ORTHO05D006114 9.8e-32 140.6 102 71.6
arahy.Tifrunner.gnm1.ann1.TWBW4W Arachis hypogaea HOM05D004760 ORTHO05D006114 1.3e-31 140.2 98 72.4
Oeu014013.2 Olea europaea HOM05D004760 ORTHO05D006114 1.3e-31 140.2 106 67.0
arahy.Tifrunner.gnm1.ann1.HQ4852 Arachis hypogaea HOM05D004760 ORTHO05D006114 1.7e-31 139.8 98 71.4
arahy.Tifrunner.gnm1.ann1.KI0H1T Arachis hypogaea HOM05D004760 ORTHO05D006114 1.7e-31 139.8 98 72.4
Ciclev10002842m.g Citrus clementina HOM05D004760 ORTHO05D006114 1.7e-31 139.8 102 71.6
Haze_23747 Corylus avellana HOM05D004760 ORTHO05D006114 1.7e-31 139.8 102 71.6
PGSC0003DMG400005521 Solanum tuberosum HOM05D004760 ORTHO05D006114 1.7e-31 139.8 102 70.6
Nn7g38254 Nelumbo nucifera HOM05D004760 ORTHO05D006114 2.2e-31 139.4 98 71.4
VMungo0331G0086 Vigna mungo HOM05D004760 ORTHO05D006114 2.2e-31 139.4 98 72.4
AUR62014927 Chenopodium quinoa HOM05D004760 ORTHO05D006114 2.9e-31 139.0 101 70.3
COL.COLO4_03696 Corchorus olitorius HOM05D004760 ORTHO05D006114 2.9e-31 139.0 102 69.6
Duzib150G1663 Durio zibethinus HOM05D004760 ORTHO05D006114 2.9e-31 139.0 104 69.2
Manes.15G173300 Manihot esculenta HOM05D004760 ORTHO05D006114 2.9e-31 139.0 98 70.4
TWI79G1159 Tripterygium wilfordii HOM05D004760 ORTHO05D006114 2.9e-31 139.0 102 70.6
Atru.chr10.822 Acer truncatum HOM05D004760 ORTHO05D006114 3.7e-31 138.7 102 69.6
Actinidia07172 Actinidia chinensis HOM05D004760 ORTHO05D006114 3.7e-31 138.7 102 69.6
FvH4_3g31090 Fragaria vesca HOM05D004760 ORTHO05D006114 3.7e-31 138.7 99 69.7
RcHm_v2.0_Chr5g0057731 Rosa chinensis HOM05D004760 ORTHO05D006114 3.7e-31 138.7 98 71.4
GSVIVG01031504001 Vitis vinifera HOM05D004760 ORTHO05D006114 3.7e-31 138.7 102 71.6
CANSAT80G1575 Cannabis sativa HOM05D004760 ORTHO05D006114 4.9e-31 138.3 102 68.6
ClCG02G021440 Citrullus lanatus HOM05D004760 ORTHO05D006114 4.9e-31 138.3 102 69.6
Glyma.03G099400 Glycine max HOM05D004760 ORTHO05D006114 4.9e-31 138.3 98 71.4
Cpa.g.sc94.2 Carica papaya HOM05D004760 ORTHO05D006114 6.4e-31 137.9 104 69.2
SalBow3G2862 Salvia bowleyana HOM05D004760 ORTHO05D006114 6.4e-31 137.9 138 55.8
Dinv29358 Davidia involucrata HOM05D004760 ORTHO05D006114 8.3e-31 137.5 102 69.6
Atru.chr10.811 Acer truncatum HOM05D004760 ORTHO05D006114 1.1e-30 137.1 102 69.6
MSTRG.22442 Avicennia marina HOM05D004760 ORTHO05D006114 1.1e-30 137.1 102 67.6
CSS0038756 Camellia sinensis var. sinensis HOM05D004760 ORTHO05D006114 1.1e-30 137.1 102 68.6
AUR62034436 Chenopodium quinoa HOM05D004760 ORTHO05D006114 1.1e-30 137.1 101 69.3
FAN25G2761 Fragaria x ananassa HOM05D004760 ORTHO05D006114 1.1e-30 137.1 102 69.6
QL01p015831 Quercus lobata HOM05D004760 ORTHO05D006114 1.1e-30 137.1 102 68.6
Sabra04G0145500 Salix brachista HOM05D004760 ORTHO05D006114 1.1e-30 137.1 102 67.6
TAR636G2244 Trochodendron aralioides HOM05D004760 ORTHO05D006114 1.1e-30 137.1 102 66.7
FAN11G0015 Fragaria x ananassa HOM05D004760 ORTHO05D006114 1.4e-30 136.7 102 68.6
Rhsim01G0212000 Rhododendron simsii HOM05D004760 ORTHO05D006114 1.4e-30 136.7 102 68.6
THA.LOC104810873 Tarenaya hassleriana HOM05D004760 ORTHO05D006114 1.9e-30 136.3 102 67.6
Lalb_Chr01g0004501 Lupinus albus HOM05D004760 ORTHO05D006114 2.4e-30 136.0 109 67.0
FAN21G0726 Fragaria x ananassa HOM05D004760 ORTHO05D006114 3.2e-30 135.6 102 68.6
vmacro14407 Vaccinium macrocarpon HOM05D004760 ORTHO05D006114 3.2e-30 135.6 98 69.4
MELO3C033128.2 Cucumis melo HOM05D004760 ORTHO05D006114 4.1e-30 135.2 102 64.7
Prupe.6G108700 Prunus persica HOM05D004760 ORTHO05D006114 4.1e-30 135.2 102 67.6
Sed0008060 Sechium edule HOM05D004760 ORTHO05D006114 4.1e-30 135.2 119 59.7
Hund01473 Selenicereus undatus HOM05D004760 ORTHO05D006114 4.1e-30 135.2 95 71.6
ECA240G4818 Erigeron canadensis HOM05D007880 ORTHO05D003386 5.4e-30 134.8 101 66.3
TWI31G0427 Tripterygium wilfordii HOM05D004760 ORTHO05D006114 5.4e-30 134.8 102 67.6
CARHR150950 Cardamine hirsuta HOM05D004760 ORTHO05D006114 9.2e-30 134.0 102 66.7
Manes.04G015300 Manihot esculenta HOM05D004760 ORTHO05D006114 9.2e-30 134.0 98 68.4
Aqoxy1G01159 Aquilegia oxysepala HOM05D004760 ORTHO05D006114 1.2e-29 133.7 98 67.3
AT3G45020 Arabidopsis thaliana HOM05D004760 ORTHO05D006114 1.2e-29 133.7 102 66.7
BcaB01g01128 Brassica carinata HOM05D004760 ORTHO05D006114 1.2e-29 133.7 102 65.7
Aa31LG4G14120 Aethionema arabicum HOM05D004760 ORTHO05D006114 1.6e-29 133.3 102 68.6
Carub.0005s1081 Capsella rubella HOM05D004760 ORTHO05D006114 1.6e-29 133.3 102 66.7
Migut.D02262 Erythranthe guttata HOM05D004760 ORTHO05D006114 1.6e-29 133.3 102 66.7
Eucgr.C00623 Eucalyptus grandis HOM05D004760 ORTHO05D006114 1.6e-29 133.3 102 66.7
Thhalv10002715m.g Eutrema salsugineum HOM05D004760 ORTHO05D006114 1.6e-29 133.3 102 66.7
Sp5g16240 Schrenkiella parvula HOM05D004760 ORTHO05D006114 1.6e-29 133.3 102 66.7
AL5G23480 Arabidopsis lyrata HOM05D004760 ORTHO05D006114 2.0e-29 132.9 102 65.7
arahy.Tifrunner.gnm1.ann1.DTBR3Z Arachis hypogaea HOM05D004760 ORTHO05D006114 2.0e-29 132.9 98 68.4
BcaC01g02002 Brassica carinata HOM05D004760 ORTHO05D006114 2.0e-29 132.9 102 65.7
C03p69650 Brassica napus HOM05D004760 ORTHO05D006114 2.0e-29 132.9 102 65.7
BolC3t19223H Brassica oleracea HOM05D004760 ORTHO05D006114 2.0e-29 132.9 102 65.7
CsaV3_4G002110 Cucumis sativus L. HOM05D004760 ORTHO05D006114 2.0e-29 132.9 95 67.4
ECA233G3649 Erigeron canadensis HOM05D004760 ORTHO05D006114 2.0e-29 132.9 102 66.7
Oeu013537.1 Olea europaea HOM05D004760 ORTHO05D006114 2.0e-29 132.9 104 66.3
A06p21630 Brassica napus HOM05D004760 ORTHO05D006114 2.7e-29 132.5 102 64.7
BraA06t25253Z Brassica rapa HOM05D004760 ORTHO05D006114 2.7e-29 132.5 102 64.7
Cc01_g10530 Coffea canephora HOM05D004760 ORTHO05D006114 2.7e-29 132.5 104 62.5
PGSC0003DMG400035806 Solanum tuberosum HOM05D004760 ORTHO05D006114 2.7e-29 132.5 102 67.6
Lsat_1_v5_gn_2_99521 Lactuca sativa HOM05D004760 ORTHO05D006114 3.5e-29 132.1 102 65.7
Potri.004G214400 Populus trichocarpa HOM05D004760 ORTHO05D006114 6.0e-29 131.3 102 67.6
Sc06g0010990 Simmondsia chinensis HOM05D004760 ORTHO05D006114 2.3e-28 129.4 95 68.4
unitig_21.g20191 Utricularia gibba HOM05D001235 ORTHO05D005684 2.3e-28 129.4 98 64.3
DCAR_013702 Daucus carota HOM05D004760 ORTHO05D006114 3.0e-28 129.0 104 65.4
Sc06g0010910 Simmondsia chinensis HOM05D004760 ORTHO05D006114 3.0e-28 129.0 95 68.4
PGR083G1146 Punica granatum HOM05D004760 ORTHO05D006114 5.0e-28 128.3 98 68.4
Rhsim13G0099000 Rhododendron simsii HOM05D004760 ORTHO05D006114 6.6e-28 127.9 87 72.4
Lj1C207G1 Lonicera japonica HOM05D000681 ORTHO05D003832 8.6e-28 127.5 98 64.3
Ah.15g090630 Amaranthus hybridus HOM05D004760 ORTHO05D006114 1.5e-27 126.7 95 65.3
C01p34030 Brassica napus HOM05D004760 ORTHO05D006114 2.5e-27 125.9 102 60.8
BolC1t03372H Brassica oleracea HOM05D004760 ORTHO05D006114 2.5e-27 125.9 102 60.8
Medtr1g080050 Medicago truncatula HOM05D004760 ORTHO05D006114 4.3e-27 125.2 98 70.4
RcHm_v2.0_Chr4g0444611 Rosa chinensis HOM05D004760 ORTHO05D006114 4.3e-27 125.2 98 66.3
Dinv37316 Davidia involucrata HOM05D004760 ORTHO05D006114 5.6e-27 124.8 98 63.3
BcaC09g49679 Brassica carinata HOM05D004760 ORTHO05D006114 1.2e-26 123.6 102 59.8
A01p26650 Brassica napus HOM05D004760 ORTHO05D006114 1.2e-26 123.6 98 61.2
BraA01t02596Z Brassica rapa HOM05D004760 ORTHO05D006114 1.2e-26 123.6 98 61.2
arahy.Tifrunner.gnm1.ann1.P1K6TB Arachis hypogaea HOM05D004760 ORTHO05D006114 1.6e-26 123.2 85 71.8
EL10Ac9g22581 Beta vulgaris HOM05D004760 ORTHO05D006114 1.8e-25 119.8 90 65.6
CDE02G4002 Ceratophyllum demersum HOM05D004760 ORTHO05D006114 2.3e-25 119.4 104 60.6
CDE09G0496 Ceratophyllum demersum HOM05D004760 ORTHO05D001676 2.3e-25 119.4 104 60.6
FAN16G0053 Fragaria x ananassa HOM05D004760 ORTHO05D006114 2.3e-25 119.4 104 62.5
SGA_v2.0_scaffold263G45970 Striga asiatica HOM05D004760 ORTHO05D006114 2.3e-25 119.4 102 58.8
Actinidia14009 Actinidia chinensis HOM05D004760 ORTHO05D006114 4.0e-25 118.6 87 64.4
SHI30132 Sapria himalayana HOM05D004760 ORTHO05D006114 6.8e-25 117.9 98 57.1
HanXRQChr14g0432111 Helianthus annuus HOM05D004760 ORTHO05D006114 8.9e-25 117.5 90 66.7
Actinidia13489 Actinidia chinensis HOM05D004760 ORTHO05D006114 1.2e-24 117.1 87 67.8
Haze_20543 Corylus avellana HOM05D004760 ORTHO05D006114 1.5e-24 116.7 95 60.0
MBI18_g16202_MAGBIO Magnolia biondii HOM05D004760 ORTHO05D006114 1.5e-24 116.7 104 57.7
PGR102G1962 Punica granatum HOM05D004760 ORTHO05D006114 2.2e-23 112.8 98 60.2
Eucgr.B02540 Eucalyptus grandis HOM05D004760 ORTHO05D006114 4.9e-23 111.7 102 58.8
arahy.Tifrunner.gnm1.ann1.B7429M Arachis hypogaea HOM05D004760 ORTHO05D000042 1.4e-22 110.2 99 61.6
PSO801G0746 Papaver somniferum HOM05D004760 ORTHO05D006114 2.4e-22 109.4 99 59.6
PSO339G3989 Papaver somniferum HOM05D004760 ORTHO05D006114 4.1e-22 108.6 99 60.6
HPP92_025344 Vanilla planifolia HOM05D004760 ORTHO05D006114 5.4e-22 108.2 100 56.0
arahy.Tifrunner.gnm1.ann1.0NB9P2 Arachis hypogaea HOM05D004760 ORTHO05D006114 7.0e-22 107.8 94 58.5
arahy.Tifrunner.gnm1.ann1.PKX4UH Arachis hypogaea HOM05D004760 ORTHO05D006114 7.0e-22 107.8 75 72.0
arahy.Tifrunner.gnm1.ann1.JVX2H3 Arachis hypogaea HOM05D004760 ORTHO05D002586 9.2e-22 107.5 77 67.5
Zm00001eb320920 Zea mays HOM05D004760 ORTHO05D006114 2.1e-21 106.3 98 56.1
Os09g0549700 Oryza sativa ssp. japonica HOM05D004760 ORTHO05D006114 2.7e-21 105.9 102 53.9
BcaB05g23055 Brassica carinata HOM05D004760 ORTHO05D006114 5.1e-20 101.7 91 60.4
ECA238G2603 Erigeron canadensis HOM05D004760 ORTHO05D006114 1.1e-19 100.5 82 62.2
Hund12449 Selenicereus undatus HOM05D004760 ORTHO05D006114 6.8e-17 91.3 60 75.0
DCAR_008992 Daucus carota HOM05D004760 ORTHO05D006114 2.0e-16 89.7 102 46.1
MELO3C026909.2 Cucumis melo HOM05D004760 ORTHO05D006114 2.6e-16 89.4 76 64.5
Peaxi162Scf00351g00053 Petunia axillaris HOM05D004760 ORTHO05D006114 3.4e-16 89.0 58 72.4
QL11p023169 Quercus lobata HOM05D004760 ORTHO05D006114 4.4e-16 88.6 67 64.2
Medtr1g063230 Medicago truncatula HOM05D004760 ORTHO05D006114 5.8e-16 88.2 94 44.7
VMungo0720G1193 Vigna mungo HOM05D004760 ORTHO05D006114 7.5e-16 87.8 86 50.0
SEGI_39147 Sequoiadendron giganteum HOM05D004760 ORTHO05D006114 9.9e-16 87.4 90 53.3
Lalb_Chr02g0155851 Lupinus albus HOM05D004760 ORTHO05D006114 1.3e-15 87.0 96 46.9
TPR.G11257 Trifolium pratense HOM05D004760 ORTHO05D006114 1.1e-14 84.0 95 43.2
CsaV3_6G014220 Cucumis sativus L. HOM05D004760 ORTHO05D006114 4.1e-14 82.0 95 48.4
ECA233G6109 Erigeron canadensis HOM05D000473 ORTHO05D001219 4.1e-14 82.0 61 62.3
Glyma.10G055400 Glycine max HOM05D004760 ORTHO05D006114 5.4e-14 81.6 91 45.1
ATR0152G025 Amborella trichopoda HOM05D004760 ORTHO05D006114 7.1e-14 81.3 94 46.8
SHI02979 Sapria himalayana HOM05D004760 ORTHO05D006114 1.6e-13 80.1 77 46.8
Psat6g074200 Pisum sativum HOM05D004760 ORTHO05D006114 2.7e-13 79.3 89 43.8
Phvul.007G219200 Phaseolus vulgaris HOM05D004760 ORTHO05D006114 3.5e-13 79.0 91 42.9
EL10Ac7g16630 Beta vulgaris HOM05D004760 ORTHO05D039006 1.3e-12 77.0 94 51.1
AUR62040351 Chenopodium quinoa HOM05D004760 ORTHO05D039006 2.3e-12 76.3 89 51.7
Ca_11503_v3 Cicer arietinum L. HOM05D004760 ORTHO05D006114 8.6e-12 74.3 80 46.2
Lj5g0000803 Lotus japonicus HOM05D004760 ORTHO05D006114 4.3e-11 72.0 90 43.3
Sc20g0005490 Simmondsia chinensis HOM05D004760 ORTHO05D006114 1.6e-10 70.1 95 41.1
AUR62042505 Chenopodium quinoa HOM05D004760 ORTHO05D138125 5.4e-06 55.1 69 44.9


User provided reference genes

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