Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_06479_v3 Cicer arietinum L. HOM05D007947 ORTHO05D010018 1.0e-34 149.4 73 100.0
TPR.G15070 Trifolium pratense HOM05D007947 ORTHO05D010018 7.5e-25 116.7 72 81.9
CANSAT35G0466 Cannabis sativa HOM05D007947 ORTHO05D010018 7.0e-23 110.2 72 76.4
LjContig00081g0013704 Lotus japonicus HOM05D007947 ORTHO05D010018 1.2e-22 109.4 71 71.8
Psat2g003200 Pisum sativum HOM05D007947 ORTHO05D010018 3.5e-22 107.8 70 74.3
Medtr5g098300 Medicago truncatula HOM05D007947 ORTHO05D010018 5.9e-22 107.1 74 74.3
BcaB03g13798 Brassica carinata HOM05D007947 ORTHO05D010018 1.9e-20 102.1 66 71.2
BolC7t41949H Brassica oleracea HOM05D007947 ORTHO05D010018 1.9e-20 102.1 66 71.2
Thhalv10009264m.g Eutrema salsugineum HOM05D007947 ORTHO05D010018 1.9e-20 102.1 67 71.6
Sp1g27170 Schrenkiella parvula HOM05D007947 ORTHO05D010018 1.2e-19 99.4 67 70.1
Duzib192G0353 Durio zibethinus HOM05D007947 ORTHO05D010018 1.6e-19 99.0 70 64.3
Glyma.02G308300 Glycine max HOM05D007947 ORTHO05D010018 3.6e-19 97.8 74 66.2
BraA07t28738Z Brassica rapa HOM05D007947 ORTHO05D010018 6.1e-19 97.1 67 68.7
Cpa.g.sc53.149 Carica papaya HOM05D007947 ORTHO05D010018 6.1e-19 97.1 66 68.2
CiPaw.10G111600 Carya illinoinensis HOM05D007947 ORTHO05D010018 8.0e-19 96.7 69 69.6
BcaB07g32795 Brassica carinata HOM05D007947 ORTHO05D010018 1.0e-18 96.3 67 68.7
C07p14500 Brassica napus HOM05D007947 ORTHO05D010018 1.0e-18 96.3 68 67.6
Eucgr.D01574 Eucalyptus grandis HOM05D007947 ORTHO05D010018 1.0e-18 96.3 74 68.9
Phvul.008G288200 Phaseolus vulgaris HOM05D007947 ORTHO05D010018 1.4e-18 95.9 70 68.6
AT1G31335 Arabidopsis thaliana HOM05D007947 ORTHO05D010018 1.8e-18 95.5 66 69.7
Carub.0001s2978 Capsella rubella HOM05D007947 ORTHO05D010018 1.8e-18 95.5 66 69.7
BcaC05g27167 Brassica carinata HOM05D007947 ORTHO05D010018 2.3e-18 95.1 67 67.2
BolC5t31792H Brassica oleracea HOM05D007947 ORTHO05D010018 2.3e-18 95.1 67 67.2
RcHm_v2.0_Chr5g0018941 Rosa chinensis HOM05D007947 ORTHO05D010018 2.3e-18 95.1 72 66.7
A09p34910 Brassica napus HOM05D007947 ORTHO05D010018 3.0e-18 94.7 67 67.2
BraA09t39021Z Brassica rapa HOM05D007947 ORTHO05D010018 3.0e-18 94.7 67 67.2
Glyma.14G004800 Glycine max HOM05D007947 ORTHO05D010018 4.0e-18 94.4 70 68.6
C05p30570 Brassica napus HOM05D007947 ORTHO05D010018 5.2e-18 94.0 67 67.2
COL.COLO4_30922 Corchorus olitorius HOM05D007947 ORTHO05D010018 5.2e-18 94.0 70 65.7
THA.LOC109116600 Tarenaya hassleriana HOM05D007947 ORTHO05D010018 1.5e-17 92.4 66 71.2
ClCG02G013940 Citrullus lanatus HOM05D007947 ORTHO05D010018 2.0e-17 92.0 63 71.4
TWI73G0356 Tripterygium wilfordii HOM05D007947 ORTHO05D010018 3.4e-17 91.3 67 71.6
FAN16G2050 Fragaria x ananassa HOM05D007947 ORTHO05D010018 4.4e-17 90.9 70 64.3
Gohir.A10G047400 Gossypium hirsutum HOM05D007947 ORTHO05D010018 4.4e-17 90.9 65 70.8
Gohir.D10G048700 Gossypium hirsutum HOM05D007947 ORTHO05D010018 4.4e-17 90.9 65 70.8
AL1G49700 Arabidopsis lyrata HOM05D007947 ORTHO05D010018 5.7e-17 90.5 66 66.7
MELO3C011733.2 Cucumis melo HOM05D007947 ORTHO05D010018 5.7e-17 90.5 70 61.4
Eucgr.E02008 Eucalyptus grandis HOM05D007947 ORTHO05D010018 5.7e-17 90.5 49 83.7
CsaV3_5G006230 Cucumis sativus L. HOM05D007947 ORTHO05D010018 9.8e-17 89.7 70 61.4
FAN21G3705 Fragaria x ananassa HOM05D000217 ORTHO05D000121 9.8e-17 89.7 64 71.9
Haze_22181 Corylus avellana HOM05D007947 ORTHO05D010018 1.3e-16 89.4 72 63.9
QL05p063460 Quercus lobata HOM05D007947 ORTHO05D010018 1.3e-16 89.4 66 66.7
CARHR030800 Cardamine hirsuta HOM05D007947 ORTHO05D010018 1.7e-16 89.0 66 65.2
Cfa013564 Carpinus fangiana HOM05D007947 ORTHO05D010018 1.7e-16 89.0 72 65.3
VMungo0647G0519 Vigna mungo HOM05D000879 ORTHO05D002864 1.7e-16 89.0 51 78.4
Gorai.011G051800 Gossypium raimondii HOM05D007947 ORTHO05D010018 2.2e-16 88.6 65 69.2
PGR142G1313 Punica granatum HOM05D007947 ORTHO05D010018 3.7e-16 87.8 64 70.3
TAR626G1269 Trochodendron aralioides HOM05D007947 ORTHO05D010018 6.3e-16 87.0 70 65.7
arahy.Tifrunner.gnm1.ann1.F2U9KI Arachis hypogaea HOM05D001153 ORTHO05D000949 8.3e-16 86.7 46 89.1
MD10G1239200 Malus domestica HOM05D007947 ORTHO05D010018 1.1e-15 86.3 67 65.7
Prupe.4G105200 Prunus persica HOM05D007947 ORTHO05D010018 1.1e-15 86.3 67 65.7
MD05G1260300 Malus domestica HOM05D007947 ORTHO05D010018 1.4e-15 85.9 67 67.2
Manes.03G076700 Manihot esculenta HOM05D007947 ORTHO05D010018 1.8e-15 85.5 78 64.1
Migut.M01948 Erythranthe guttata HOM05D007947 ORTHO05D010018 2.4e-15 85.1 70 58.6
Hma1.2p1_0326F.1_g126180 Hydrangea macrophylla HOM05D007947 ORTHO05D010018 4.1e-15 84.3 63 66.7
Duzib235G0890 Durio zibethinus HOM05D007947 ORTHO05D010018 5.4e-15 84.0 63 63.5
Nn7g37910 Nelumbo nucifera HOM05D007947 ORTHO05D010018 5.4e-15 84.0 73 60.3
Potri.001G082332 Populus trichocarpa HOM05D007947 ORTHO05D010018 5.4e-15 84.0 66 63.6
Potri.003G148100 Populus trichocarpa HOM05D007947 ORTHO05D010018 5.4e-15 84.0 70 61.4
Sopen02g018620 Solanum pennellii HOM05D007947 ORTHO05D010018 1.2e-14 82.8 50 72.0
CSS0033410 Camellia sinensis var. sinensis HOM05D007947 ORTHO05D010018 1.6e-14 82.4 66 60.6
DCAR_007806 Daucus carota HOM05D007947 ORTHO05D010018 1.6e-14 82.4 63 66.7
SalBow8G2047 Salvia bowleyana HOM05D007947 ORTHO05D010018 2.0e-14 82.0 70 54.3
Ciclev10017351m.g Citrus clementina HOM05D007947 ORTHO05D010018 2.7e-14 81.6 49 75.5
Gohir.A09G076300 Gossypium hirsutum HOM05D007947 ORTHO05D010018 2.7e-14 81.6 74 51.4
Gohir.D09G076300 Gossypium hirsutum HOM05D007947 ORTHO05D010018 3.5e-14 81.3 74 51.4
Gorai.006G091500 Gossypium raimondii HOM05D007947 ORTHO05D010018 3.5e-14 81.3 74 51.4
PGSC0003DMG400021235 Solanum tuberosum HOM05D007947 ORTHO05D010018 4.6e-14 80.9 53 67.9
Lalb_Chr04g0247121 Lupinus albus HOM05D007947 ORTHO05D010018 5.9e-14 80.5 49 81.6
Sabra03G0107800 Salix brachista HOM05D000054 ORTHO05D000171 2.3e-13 78.6 66 60.6
Medtr5g098270 Medicago truncatula HOM05D007947 ORTHO05D010018 6.6e-13 77.0 46 73.9
Cc09_g06500 Coffea canephora HOM05D007947 ORTHO05D010018 3.3e-12 74.7 56 58.9
Oeu030705.1 Olea europaea HOM05D007947 ORTHO05D010018 7.3e-12 73.6 62 56.5
Nn7g37911 Nelumbo nucifera HOM05D007947 ORTHO05D010018 1.4e-10 69.3 73 50.7
Zm00001eb057320 Zea mays HOM05D007947 ORTHO05D010018 5.2e-10 67.4 67 55.2
HanXRQChr16g0528851 Helianthus annuus HOM05D007947 ORTHO05D010018 8.9e-10 66.6 64 54.7
Ciclev10017780m.g Citrus clementina HOM05D007947 ORTHO05D010018 2.0e-09 65.5 40 65.0
Zm00001eb059730 Zea mays HOM05D007947 ORTHO05D010018 2.0e-09 65.5 67 53.7
Sc09g0004070 Simmondsia chinensis HOM05D007947 ORTHO05D010018 2.6e-09 65.1 49 65.3
Zm00001eb213660 Zea mays HOM05D007947 ORTHO05D010018 7.5e-09 63.5 66 50.0
Os03g0780200 Oryza sativa ssp. japonica HOM05D007947 ORTHO05D010018 1.7e-08 62.4 63 52.4
HanXRQChr14g0454561 Helianthus annuus HOM05D009309 ORTHO05D011491 9.2e-07 56.6 58 53.4
Lsat_1_v5_gn_2_106500 Lactuca sativa HOM05D007947 ORTHO05D010018 9.2e-07 56.6 49 61.2
Lj1g0009603 Lotus japonicus HOM05D009309 ORTHO05D011491 1.2e-06 56.2 50 62.0
Glyma.19G182200 Glycine max HOM05D009309 ORTHO05D011491 2.0e-06 55.5 50 60.0
Rhsim05G0179800 Rhododendron simsii HOM05D009309 ORTHO05D011491 2.7e-06 55.1 56 53.6
Glyma.03G181500 Glycine max HOM05D009309 ORTHO05D011491 3.5e-06 54.7 50 60.0
Phvul.001G177600 Phaseolus vulgaris HOM05D009309 ORTHO05D011491 3.5e-06 54.7 50 62.0
Migut.J00541 Erythranthe guttata HOM05D009309 ORTHO05D011491 6.0e-06 53.9 63 49.2
Dinv37295 Davidia involucrata HOM05D009309 ORTHO05D011491 7.8e-06 53.5 50 56.0


User provided reference genes

Program Settings