Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_06459_v3 Cicer arietinum L. HOM05D003663 ORTHO05D005327 1.3e-103 379.8 195 100.0
TPR.G1287 Trifolium pratense HOM05D003663 ORTHO05D005327 1.1e-83 313.5 197 80.7
Medtr5g097370 Medicago truncatula HOM05D003663 ORTHO05D005327 9.4e-83 310.5 191 81.7
Psat2g004440 Pisum sativum HOM05D003663 ORTHO05D005327 2.1e-82 309.3 196 81.6
Glyma.14G007200 Glycine max HOM05D003663 ORTHO05D005327 5.7e-80 301.2 195 75.9
LjContig00081g0009748 Lotus japonicus HOM05D003663 ORTHO05D005327 6.1e-74 281.2 199 75.9
arahy.Tifrunner.gnm1.ann1.8QBK2E Arachis hypogaea HOM05D003663 ORTHO05D005327 1.8e-73 279.6 192 72.4
arahy.Tifrunner.gnm1.ann1.P7DY53 Arachis hypogaea HOM05D003663 ORTHO05D005327 1.8e-73 279.6 192 72.4
Phvul.008G285700 Phaseolus vulgaris HOM05D003663 ORTHO05D005327 1.7e-68 263.1 168 78.0
VMungo0647G1338 Vigna mungo HOM05D003663 ORTHO05D005327 5.0e-68 261.5 194 70.1
Lalb_Chr17g0349111 Lupinus albus HOM05D003663 ORTHO05D005327 1.3e-60 236.9 155 76.1
Hma1.2p1_1267F.1_g271530 Hydrangea macrophylla HOM05D003663 ORTHO05D005327 2.0e-53 213.0 201 52.7
Hma1.2p1_2614F.1_g325410 Hydrangea macrophylla HOM05D003663 ORTHO05D005327 7.8e-53 211.1 201 52.2
Sed0003500 Sechium edule HOM05D003663 ORTHO05D005327 4.7e-50 201.8 182 58.8
TAR627G0054 Trochodendron aralioides HOM05D003663 ORTHO05D005327 4.7e-50 201.8 190 53.7
ClCG02G002710 Citrullus lanatus HOM05D003663 ORTHO05D005327 4.0e-49 198.7 193 54.9
TWI36G0551 Tripterygium wilfordii HOM05D003663 ORTHO05D005327 7.5e-48 194.5 193 53.4
MD09G1122000 Malus domestica HOM05D003663 ORTHO05D005327 1.4e-46 190.3 161 59.6
MELO3C024107.2 Cucumis melo HOM05D003663 ORTHO05D005327 2.7e-45 186.0 188 54.8
MELO3C028604.2 Cucumis melo HOM05D003663 ORTHO05D005327 4.6e-45 185.3 185 54.1
Glyma.02G305800 Glycine max HOM05D003663 ORTHO05D005327 1.3e-44 183.7 109 82.6
CsaV3_7G023690 Cucumis sativus L. HOM05D003663 ORTHO05D005327 4.3e-43 178.7 169 53.3
PGR142G2458 Punica granatum HOM05D003663 ORTHO05D005327 1.2e-40 170.6 192 50.0
Aqoxy3G02718 Aquilegia oxysepala HOM05D003663 ORTHO05D005327 9.9e-40 167.5 183 47.0
TPR.G10569 Trifolium pratense HOM05D003663 ORTHO05D005327 1.4e-38 163.7 153 54.2
Ciclev10017620m.g Citrus clementina HOM05D003663 ORTHO05D005327 1.9e-38 163.3 166 50.6
Prupe.4G006800 Prunus persica HOM05D003663 ORTHO05D005327 4.1e-38 162.2 136 58.1
Sed0016160 Sechium edule HOM05D003663 ORTHO05D005327 4.1e-38 162.2 194 48.5
Glyma.09G012100 Glycine max HOM05D003663 ORTHO05D005327 9.2e-38 161.0 157 54.8
arahy.Tifrunner.gnm1.ann1.5NF29Y Arachis hypogaea HOM05D003663 ORTHO05D005327 2.7e-37 159.5 161 51.6
Nn1g03229 Nelumbo nucifera HOM05D003663 ORTHO05D005327 3.5e-37 159.1 158 50.6
arahy.Tifrunner.gnm1.ann1.CR9YGF Arachis hypogaea HOM05D003663 ORTHO05D005327 1.3e-36 157.1 156 53.8
Thhalv10005288m.g Eutrema salsugineum HOM05D003663 ORTHO05D005327 1.7e-36 156.8 141 53.9
Ca_00744_v3 Cicer arietinum L. HOM05D003663 ORTHO05D005327 2.3e-36 156.4 153 52.3
Lj6g0026147 Lotus japonicus HOM05D003663 ORTHO05D005327 3.0e-36 156.0 162 49.4
AL6G38450 Arabidopsis lyrata HOM05D003663 ORTHO05D005327 3.9e-36 155.6 158 51.3
BcaB04g19727 Brassica carinata HOM05D003663 ORTHO05D005327 1.5e-35 153.7 159 50.3
AT5G26730 Arabidopsis thaliana HOM05D003663 ORTHO05D005327 1.9e-35 153.3 159 50.3
Carub.0006s2423 Capsella rubella HOM05D003663 ORTHO05D005327 1.9e-35 153.3 159 52.8
CARHR186960 Cardamine hirsuta HOM05D003663 ORTHO05D005327 1.9e-35 153.3 136 55.1
Lalb_Chr20g0119391 Lupinus albus HOM05D003663 ORTHO05D005327 3.3e-35 152.5 155 51.6
Psat1g178200 Pisum sativum HOM05D003663 ORTHO05D005327 4.3e-35 152.1 153 51.0
A09p05770 Brassica napus HOM05D003663 ORTHO05D005327 9.6e-35 151.0 158 49.4
BraA09t36218Z Brassica rapa HOM05D003663 ORTHO05D005327 9.6e-35 151.0 158 49.4
VMungo0540G0424 Vigna mungo HOM05D003663 ORTHO05D005327 1.6e-34 150.2 154 50.0
THA.LOC104826655 Tarenaya hassleriana HOM05D003663 ORTHO05D005327 2.8e-34 149.4 158 49.4
BolC9t53556H Brassica oleracea HOM05D003663 ORTHO05D005327 3.6e-34 149.1 160 47.5
BcaC04g23626 Brassica carinata HOM05D003663 ORTHO05D005327 4.7e-34 148.7 161 47.2
C09p06370 Brassica napus HOM05D003663 ORTHO05D005327 4.7e-34 148.7 161 47.2
Phvul.006G141400 Phaseolus vulgaris HOM05D003663 ORTHO05D005327 2.4e-33 146.4 156 49.4
Prupe.3G201600 Prunus persica HOM05D003663 ORTHO05D005327 4.0e-33 145.6 149 53.7
CsaV3_7G002660 Cucumis sativus L. HOM05D003663 ORTHO05D005327 7.6e-32 141.4 123 60.2
FAN25G1738 Fragaria x ananassa HOM05D003663 ORTHO05D005327 1.3e-31 140.6 161 45.3
FvH4_3g00560 Fragaria vesca HOM05D003663 ORTHO05D005327 2.9e-31 139.4 161 44.1
Oeu060390.1 Olea europaea HOM05D002083 ORTHO05D000332 2.4e-30 136.3 161 43.5
Aqoxy1G04227 Aquilegia oxysepala HOM05D003663 ORTHO05D005327 4.2e-30 135.6 136 52.9
ATR0624G116 Amborella trichopoda HOM05D003663 ORTHO05D005327 2.1e-29 133.3 155 41.3
Oeu027885.1 Olea europaea HOM05D003663 ORTHO05D005327 4.6e-29 132.1 158 43.0
Aqoxy1G04229 Aquilegia oxysepala HOM05D003663 ORTHO05D005327 7.8e-29 131.3 129 50.4
BcaNung03959 Brassica carinata HOM05D003663 ORTHO05D005327 1.3e-28 130.6 165 43.6
RcHm_v2.0_Chr2g0156681 Rosa chinensis HOM05D003663 ORTHO05D005327 1.3e-28 130.6 96 62.5
A06p36830 Brassica napus HOM05D003663 ORTHO05D005327 1.7e-28 130.2 164 44.5
BraA06t26609Z Brassica rapa HOM05D003663 ORTHO05D005327 1.7e-28 130.2 164 44.5
C07p41660 Brassica napus HOM05D003663 ORTHO05D005327 2.3e-28 129.8 164 44.5
BolC7t44701H Brassica oleracea HOM05D003663 ORTHO05D005327 2.3e-28 129.8 164 44.5
BcaNung02825 Brassica carinata HOM05D003663 ORTHO05D005327 6.6e-28 128.3 188 41.0
Peaxi162Scf00815g00311 Petunia axillaris HOM05D003663 ORTHO05D005327 6.6e-28 128.3 156 42.3
TWI38G0283 Tripterygium wilfordii HOM05D003663 ORTHO05D005327 1.5e-27 127.1 162 39.5
Eucgr.L03441 Eucalyptus grandis HOM05D003663 ORTHO05D005327 1.9e-27 126.7 119 52.9
Manes.09G126900 Manihot esculenta HOM05D003663 ORTHO05D005327 1.9e-27 126.7 189 39.7
PSO302G0013 Papaver somniferum HOM05D003663 ORTHO05D005327 1.9e-27 126.7 165 43.0
Nitab4.5_0001762g0070 Nicotiana tabacum HOM05D003663 ORTHO05D005327 2.5e-27 126.3 150 44.7
Aqoxy1G04228 Aquilegia oxysepala HOM05D003663 ORTHO05D005327 3.3e-27 125.9 129 48.8
Nitab4.5_0000021g0580 Nicotiana tabacum HOM05D003663 ORTHO05D005327 3.3e-27 125.9 160 44.4
PSO210G1796 Papaver somniferum HOM05D003663 ORTHO05D005327 3.3e-27 125.9 162 42.0
CAN.G65.131 Capsicum annuum HOM05D003663 ORTHO05D005327 4.3e-27 125.6 184 38.6
Sopen06g029160 Solanum pennellii HOM05D003663 ORTHO05D005327 2.1e-26 123.2 156 42.3
BolC2t06783H Brassica oleracea HOM05D003663 ORTHO05D005327 2.8e-26 122.9 191 37.7
Sp2g21370 Schrenkiella parvula HOM05D003663 ORTHO05D005327 3.6e-26 122.5 115 52.2
BcaNung00434 Brassica carinata HOM05D003663 ORTHO05D005327 1.1e-25 120.9 141 44.7
Sp6g27190 Schrenkiella parvula HOM05D003663 ORTHO05D005327 1.4e-25 120.6 160 40.0
THA.LOC104827213 Tarenaya hassleriana HOM05D003663 ORTHO05D005327 1.4e-25 120.6 154 41.6
BraA02t05351Z Brassica rapa HOM05D003663 ORTHO05D005327 1.8e-25 120.2 189 39.2
CSS0037566 Camellia sinensis var. sinensis HOM05D003663 ORTHO05D005327 1.8e-25 120.2 178 37.6
A02p03870 Brassica napus HOM05D003663 ORTHO05D005327 2.4e-25 119.8 191 38.7
ECA233G1163 Erigeron canadensis HOM05D003663 ORTHO05D005327 3.1e-25 119.4 151 40.4
ATR0829G139 Amborella trichopoda HOM05D003663 ORTHO05D005327 5.3e-25 118.6 168 38.7
PGSC0003DMG400027034 Solanum tuberosum HOM05D003663 ORTHO05D005327 6.9e-25 118.2 175 40.0
HanXRQChr14g0462981 Helianthus annuus HOM05D003663 ORTHO05D005327 9.0e-25 117.9 162 38.3
BcaC03g18525 Brassica carinata HOM05D003663 ORTHO05D005327 1.5e-24 117.1 191 37.2
C02p08670 Brassica napus HOM05D003663 ORTHO05D005327 1.5e-24 117.1 191 37.2
Cpa.g.sc504.5 Carica papaya HOM05D003663 ORTHO05D005327 1.5e-24 117.1 153 44.4
Lsat_1_v5_gn_2_136720 Lactuca sativa HOM05D003663 ORTHO05D005327 1.5e-24 117.1 167 38.3
TPR.G17125 Trifolium pratense HOM05D003663 ORTHO05D005327 2.0e-24 116.7 192 39.6
Medtr4g099150 Medicago truncatula HOM05D003663 ORTHO05D005327 2.6e-24 116.3 131 45.8
TAR374G1477 Trochodendron aralioides HOM05D003663 ORTHO05D005327 2.6e-24 116.3 185 38.9
Aqoxy3G02161 Aquilegia oxysepala HOM05D003663 ORTHO05D005327 3.4e-24 115.9 174 36.8
Duzib177G0557 Durio zibethinus HOM05D003663 ORTHO05D005327 4.5e-24 115.5 158 42.4
Lj4g0026545 Lotus japonicus HOM05D003663 ORTHO05D005327 4.5e-24 115.5 169 37.9
Duzib106G1874 Durio zibethinus HOM05D003663 ORTHO05D005327 5.8e-24 115.2 195 37.9
TWI34G0428 Tripterygium wilfordii HOM05D003663 ORTHO05D005327 5.8e-24 115.2 179 39.7
Carub.0006s1513 Capsella rubella HOM05D003663 ORTHO05D005327 7.6e-24 114.8 158 39.9
QL09p023778 Quercus lobata HOM05D003663 ORTHO05D005327 7.6e-24 114.8 151 42.4
EL10Ac3g05074 Beta vulgaris HOM05D003663 ORTHO05D005327 9.9e-24 114.4 171 37.4
Migut.F00942 Erythranthe guttata HOM05D003663 ORTHO05D005327 9.9e-24 114.4 154 41.6
DCAR_010543 Daucus carota HOM05D003663 ORTHO05D005327 1.3e-23 114.0 181 36.5
Lalb_Chr05g0220821 Lupinus albus HOM05D003663 ORTHO05D005327 1.3e-23 114.0 185 35.7
MBI04_g20973_MAGBIO Magnolia biondii HOM05D003663 ORTHO05D005327 1.3e-23 114.0 163 39.3
Sc13g0010870 Simmondsia chinensis HOM05D003663 ORTHO05D005327 1.3e-23 114.0 150 44.0
Gorai.007G348900 Gossypium raimondii HOM05D003663 ORTHO05D005327 1.7e-23 113.6 135 45.2
AL6G27920 Arabidopsis lyrata HOM05D003663 ORTHO05D005327 2.2e-23 113.2 164 39.0
Gohir.D11G318900 Gossypium hirsutum HOM05D003663 ORTHO05D005327 2.2e-23 113.2 162 42.0
Nn3g19378 Nelumbo nucifera HOM05D003663 ORTHO05D005327 2.2e-23 113.2 172 37.8
SGA_v2.0_scaffold50G18444 Striga asiatica HOM05D003663 ORTHO05D005327 2.9e-23 112.8 179 38.0
AT5G16920 Arabidopsis thaliana HOM05D003663 ORTHO05D005327 4.9e-23 112.1 164 39.6
Lj3P887T57 Lonicera japonica HOM05D003663 ORTHO05D005327 4.9e-23 112.1 159 37.7
Psat4g076520 Pisum sativum HOM05D003663 ORTHO05D005327 4.9e-23 112.1 193 39.4
Gohir.A11G303600 Gossypium hirsutum HOM05D003663 ORTHO05D005327 6.4e-23 111.7 161 41.0
vmacro22176 Vaccinium macrocarpon HOM05D003663 ORTHO05D005327 6.4e-23 111.7 150 39.3
Cfa016035 Carpinus fangiana HOM05D003663 ORTHO05D005327 8.4e-23 111.3 192 39.6
Thhalv10014405m.g Eutrema salsugineum HOM05D003663 ORTHO05D005327 8.4e-23 111.3 191 35.1
PGR142G2930 Punica granatum HOM05D003663 ORTHO05D005327 8.4e-23 111.3 130 42.3
Rhsim03G0221600 Rhododendron simsii HOM05D003663 ORTHO05D005327 8.4e-23 111.3 167 38.3
CARHR196240 Cardamine hirsuta HOM05D003663 ORTHO05D005327 1.1e-22 110.9 186 38.2
Ciclev10021912m.g Citrus clementina HOM05D003663 ORTHO05D005327 1.4e-22 110.5 153 37.9
Potri.019G049600 Populus trichocarpa HOM05D003663 ORTHO05D005327 1.4e-22 110.5 158 39.2
BcaB07g29963 Brassica carinata HOM05D003663 ORTHO05D005327 3.2e-22 109.4 94 54.3
Rhsim09G0213000 Rhododendron simsii HOM05D003663 ORTHO05D005327 3.2e-22 109.4 179 37.4
CANSAT21G0248 Cannabis sativa HOM05D003663 ORTHO05D005327 4.2e-22 109.0 152 40.1
Potri.006G016700 Populus trichocarpa HOM05D003663 ORTHO05D005327 4.2e-22 109.0 128 41.4
ClCG01G010650 Citrullus lanatus HOM05D003663 ORTHO05D005327 5.4e-22 108.6 124 46.0
Sed0020467 Sechium edule HOM05D003663 ORTHO05D005327 5.4e-22 108.6 126 44.4
Phvul.003G226500 Phaseolus vulgaris HOM05D003663 ORTHO05D005327 7.1e-22 108.2 155 38.1
VMungo0251G1526 Vigna mungo HOM05D003663 ORTHO05D005327 7.1e-22 108.2 151 38.4
Sabra19G0059300 Salix brachista HOM05D003663 ORTHO05D005327 1.2e-21 107.5 151 39.7
SalBow2G0094 Salvia bowleyana HOM05D003663 ORTHO05D005327 1.6e-21 107.1 154 39.6
AUR62002065 Chenopodium quinoa HOM05D003663 ORTHO05D005327 3.5e-21 105.9 152 40.1
COL.COLO4_06064 Corchorus olitorius HOM05D003663 ORTHO05D005327 3.5e-21 105.9 172 40.7
Hma1.2p1_1680F.1_g297170 Hydrangea macrophylla HOM05D003663 ORTHO05D005327 6.0e-21 105.1 194 34.0
Medtr2g026520 Medicago truncatula HOM05D003663 ORTHO05D005327 7.9e-21 104.8 117 46.2
BcaB04g19726 Brassica carinata HOM05D003663 ORTHO05D005327 1.0e-20 104.4 159 39.6
Glyma.17G149700 Glycine max HOM05D003663 ORTHO05D005327 1.0e-20 104.4 189 33.9
PSO782G5365 Papaver somniferum HOM05D003663 ORTHO05D005327 1.0e-20 104.4 154 38.3
Cc00_g28240 Coffea canephora HOM05D003663 ORTHO05D005327 1.3e-20 104.0 152 38.8
Sed0002316 Sechium edule HOM05D003663 ORTHO05D005327 1.3e-20 104.0 126 45.2
Duzib128G0448 Durio zibethinus HOM05D003663 ORTHO05D005327 2.3e-20 103.2 192 36.5
PSO063G6858 Papaver somniferum HOM05D003663 ORTHO05D005327 2.3e-20 103.2 154 36.4
Haze_00422 Corylus avellana HOM05D003663 ORTHO05D005327 3.0e-20 102.8 192 37.5
Ah.13g072750 Amaranthus hybridus HOM05D003663 ORTHO05D005327 5.1e-20 102.1 197 35.0
CiPaw.06G032900 Carya illinoinensis HOM05D003663 ORTHO05D005327 8.7e-20 101.3 193 35.2
Eucgr.K00086 Eucalyptus grandis HOM05D003663 ORTHO05D005327 3.3e-19 99.4 178 36.0
A02p39370 Brassica napus HOM05D003663 ORTHO05D010021 5.6e-19 98.6 162 38.9
Prupe.2G326500 Prunus persica HOM05D003663 ORTHO05D005327 1.6e-18 97.1 142 38.7
Os12g0233900 Oryza sativa ssp. japonica HOM05D003663 ORTHO05D005327 5.8e-16 88.6 155 31.6
Actinidia33794 Actinidia chinensis HOM05D003663 ORTHO05D005327 1.3e-15 87.4 130 39.2
FAN05G2299 Fragaria x ananassa HOM05D003663 ORTHO05D005327 3.2e-14 82.8 72 62.5
Lalb_Chr16g0386341 Lupinus albus HOM05D003663 ORTHO05D005327 4.6e-13 79.0 87 41.4
Nn1g01862 Nelumbo nucifera HOM05D003663 ORTHO05D005327 4.6e-13 79.0 120 39.2
FAN02G2952 Fragaria x ananassa HOM05D000062 ORTHO05D000043 8.7e-12 74.7 66 60.6
Thecc.05G213800 Theobroma cacao HOM05D003663 ORTHO05D005327 5.3e-09 65.5 197 30.5
Potri.016G009000 Populus trichocarpa HOM05D003663 ORTHO05D005327 9.0e-09 64.7 58 46.6
Actinidia34308 Actinidia chinensis HOM05D003663 ORTHO05D005327 1.7e-07 60.5 73 42.5
Glyma.15G116750 Glycine max HOM05D003663 ORTHO05D005327 3.2e-06 56.2 61 44.3
BcaC03g17870 Brassica carinata HOM05D011290 ORTHO05D010021 4.2e-06 55.8 115 32.2
AUR62028667 Chenopodium quinoa HOM05D005423 ORTHO05D006223 7.1e-06 55.1 88 35.2


User provided reference genes

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