Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_06427_v3 Cicer arietinum L. HOM05D004114 ORTHO05D004667 0.0e+00 1248.0 653 100.0
TPR.G1262 Trifolium pratense HOM05D004114 ORTHO05D004667 0.0e+00 1139.8 653 91.4
Medtr5g096860 Medicago truncatula HOM05D004114 ORTHO05D004667 0.0e+00 1131.7 653 90.5
Psat2g005360 Pisum sativum HOM05D004114 ORTHO05D004667 1.9e-308 1062.0 683 82.7
Glyma.02G304000 Glycine max HOM05D004114 ORTHO05D004667 2.7e-307 1058.1 651 85.3
LjContig00081g0000990 Lotus japonicus HOM05D004114 ORTHO05D004667 2.5e-305 1051.6 656 83.5
Phvul.008G283500 Phaseolus vulgaris HOM05D004114 ORTHO05D004667 3.5e-299 1031.2 653 82.5
arahy.Tifrunner.gnm1.ann1.Q5U408 Arachis hypogaea HOM05D004114 ORTHO05D004667 1.1e-297 1026.2 653 82.2
arahy.Tifrunner.gnm1.ann1.49TU8N Arachis hypogaea HOM05D004114 ORTHO05D004667 9.5e-297 1023.1 653 81.9
VMungo0647G1293 Vigna mungo HOM05D004114 ORTHO05D004667 1.2e-296 1022.7 653 81.9
Glyma.18G070400 Glycine max HOM05D004114 ORTHO05D004667 1.5e-289 999.2 652 80.8
Glyma.08G335400 Glycine max HOM05D004114 ORTHO05D004667 3.1e-287 991.5 653 80.6
Phvul.006G062700 Phaseolus vulgaris HOM05D004114 ORTHO05D004667 3.1e-287 991.5 647 80.7
Lalb_Chr15g0082581 Lupinus albus HOM05D004114 ORTHO05D004667 1.6e-275 952.6 646 77.4
arahy.Tifrunner.gnm1.ann1.V027MD Arachis hypogaea HOM05D004114 ORTHO05D004667 9.0e-271 936.8 651 75.7
arahy.Tifrunner.gnm1.ann1.JLH2AW Arachis hypogaea HOM05D004114 ORTHO05D004667 1.2e-270 936.4 651 75.7
arahy.Tifrunner.gnm1.ann1.4V7EDQ Arachis hypogaea HOM05D004114 ORTHO05D004667 2.9e-269 931.8 587 81.9
Lalb_Chr18g0050571 Lupinus albus HOM05D004114 ORTHO05D004667 7.4e-265 917.1 646 75.4
Cfa009771 Carpinus fangiana HOM05D004114 ORTHO05D004667 2.3e-250 869.0 640 70.6
Manes.06G164400 Manihot esculenta HOM05D004114 ORTHO05D004667 1.7e-248 862.8 663 66.5
QL01p004694 Quercus lobata HOM05D004114 ORTHO05D004667 6.9e-247 857.4 666 68.5
Prupe.4G249300 Prunus persica HOM05D004114 ORTHO05D004667 9.1e-247 857.1 652 67.9
RcHm_v2.0_Chr5g0052041 Rosa chinensis HOM05D004114 ORTHO05D004667 2.6e-246 855.5 652 68.3
Potri.009G053400 Populus trichocarpa HOM05D004114 ORTHO05D004667 4.5e-246 854.7 687 66.1
MD11G1193200 Malus domestica HOM05D004114 ORTHO05D004667 7.7e-246 854.0 644 68.5
GSVIVG01025259001 Vitis vinifera HOM05D004114 ORTHO05D004667 3.8e-245 851.7 647 68.2
Thecc.09G233600 Theobroma cacao HOM05D004114 ORTHO05D004667 8.5e-245 850.5 661 67.9
FvH4_3g28860 Fragaria vesca HOM05D004114 ORTHO05D004667 1.4e-244 849.7 651 68.8
Duzib150G0789 Durio zibethinus HOM05D004114 ORTHO05D004667 1.2e-243 846.7 651 67.6
MD03G1175100 Malus domestica HOM05D004114 ORTHO05D004667 1.8e-242 842.8 644 67.7
FAN16G1351 Fragaria x ananassa HOM05D004114 ORTHO05D004667 2.3e-242 842.4 651 68.2
COL.COLO4_07585 Corchorus olitorius HOM05D004114 ORTHO05D004667 3.0e-242 842.0 648 68.2
TWI34G1345 Tripterygium wilfordii HOM05D004114 ORTHO05D004667 2.0e-241 839.3 666 64.7
Sabra09G0038900 Salix brachista HOM05D004114 ORTHO05D004667 3.3e-241 838.6 686 64.3
Dinv22178 Davidia involucrata HOM05D004114 ORTHO05D004667 9.7e-241 837.0 658 67.5
Dinv36259 Davidia involucrata HOM05D004114 ORTHO05D004667 2.8e-240 835.5 650 67.8
Atru.chr3.2717 Acer truncatum HOM05D004114 ORTHO05D004667 8.2e-240 833.9 641 66.8
Gorai.006G128700 Gossypium raimondii HOM05D004114 ORTHO05D004667 1.1e-239 833.6 656 67.2
FAN11G0384 Fragaria x ananassa HOM05D004114 ORTHO05D004667 1.8e-239 832.8 638 68.7
Gohir.D09G111100 Gossypium hirsutum HOM05D004114 ORTHO05D004667 7.0e-239 830.9 656 67.2
CANSAT54G0770 Cannabis sativa HOM05D004114 ORTHO05D004667 2.0e-238 829.3 651 66.7
vmacro12717 Vaccinium macrocarpon HOM05D004114 ORTHO05D004667 1.7e-237 826.2 662 65.0
Gohir.A09G114400 Gossypium hirsutum HOM05D004114 ORTHO05D004667 2.9e-237 825.5 660 66.8
FAN21G1677 Fragaria x ananassa HOM05D004114 ORTHO05D004667 6.1e-235 817.8 636 68.2
Actinidia23972 Actinidia chinensis HOM05D004114 ORTHO05D004667 1.4e-234 816.6 655 64.9
Oeu015664.1 Olea europaea HOM05D004114 ORTHO05D004667 1.5e-233 813.1 659 63.3
CSS0048735 Camellia sinensis var. sinensis HOM05D004114 ORTHO05D004667 4.8e-232 808.1 652 65.2
MELO3C015192.2 Cucumis melo HOM05D004114 ORTHO05D004667 3.5e-230 802.0 647 63.7
CsaV3_1G042830 Cucumis sativus L. HOM05D004114 ORTHO05D004667 3.5e-230 802.0 649 63.8
TAR633G1524 Trochodendron aralioides HOM05D004114 ORTHO05D004667 2.2e-229 799.3 623 66.3
Duzib168G0105 Durio zibethinus HOM05D004114 ORTHO05D004667 8.8e-226 787.3 651 64.4
PGR119G0430 Punica granatum HOM05D004114 ORTHO05D004667 1.3e-224 783.5 654 62.1
Cc00_g05950 Coffea canephora HOM05D004114 ORTHO05D004667 1.7e-224 783.1 657 61.6
Nn7g36204 Nelumbo nucifera HOM05D004114 ORTHO05D004667 2.8e-224 782.3 645 62.8
Thhalv10011291m.g Eutrema salsugineum HOM05D004114 ORTHO05D004667 1.6e-222 776.5 644 62.3
Sp1g38010 Schrenkiella parvula HOM05D004114 ORTHO05D004667 1.6e-222 776.5 644 62.6
PSO339G0497 Papaver somniferum HOM05D004114 ORTHO05D004667 4.5e-222 775.0 656 62.0
THA.LOC104817907 Tarenaya hassleriana HOM05D004114 ORTHO05D004667 5.0e-221 771.5 649 60.4
ClCG03G013250 Citrullus lanatus HOM05D004114 ORTHO05D004667 1.6e-219 766.5 649 61.9
BraA06t23464Z Brassica rapa HOM05D004114 ORTHO05D004667 2.7e-219 765.8 644 61.0
DCAR_029951 Daucus carota HOM05D004114 ORTHO05D004667 2.7e-219 765.8 646 61.1
CSS0035176 Camellia sinensis var. sinensis HOM05D004114 ORTHO05D004667 1.0e-218 763.8 652 62.7
Aa31LG10G3520 Aethionema arabicum HOM05D004114 ORTHO05D004667 2.3e-218 762.7 646 59.9
BcaB07g33582 Brassica carinata HOM05D004114 ORTHO05D004667 5.2e-218 761.5 644 60.7
Aqoxy2G00130 Aquilegia oxysepala HOM05D004114 ORTHO05D004667 1.2e-217 760.4 638 62.2
BcaC08g43302 Brassica carinata HOM05D004114 ORTHO05D004667 1.2e-217 760.4 644 60.6
BolC6t35762H Brassica oleracea HOM05D004114 ORTHO05D004667 1.2e-217 760.4 644 60.6
AT1G51350 Arabidopsis thaliana HOM05D004114 ORTHO05D004667 3.4e-217 758.8 643 60.0
FAN25G0168 Fragaria x ananassa HOM05D004114 ORTHO05D004667 7.5e-217 757.7 649 63.0
TWI60G1569 Tripterygium wilfordii HOM05D004114 ORTHO05D004667 1.7e-216 756.5 654 60.9
Hund07507 Selenicereus undatus HOM05D004114 ORTHO05D004667 2.8e-216 755.7 638 61.4
Sed0020827 Sechium edule HOM05D004114 ORTHO05D004667 6.3e-216 754.6 613 64.1
AL1G59170 Arabidopsis lyrata HOM05D004114 ORTHO05D004667 8.3e-216 754.2 643 59.9
Ah.06g194200 Amaranthus hybridus HOM05D004114 ORTHO05D004667 1.4e-215 753.4 648 58.8
Peaxi162Scf00004g00237 Petunia axillaris HOM05D004114 ORTHO05D004667 1.8e-215 753.1 660 59.8
A06p02560 Brassica napus HOM05D004114 ORTHO05D004667 2.0e-214 749.6 631 60.9
CARHR041420 Cardamine hirsuta HOM05D004114 ORTHO05D004667 3.5e-214 748.8 644 59.3
CiPaw.13G160800 Carya illinoinensis HOM05D004114 ORTHO05D004667 4.5e-214 748.4 558 70.4
Sc16g0011490 Simmondsia chinensis HOM05D004114 ORTHO05D004667 5.9e-214 748.0 641 61.2
Carub.0001s4022 Capsella rubella HOM05D004114 ORTHO05D004667 2.9e-213 745.7 640 59.5
C06p06490 Brassica napus HOM05D004114 ORTHO05D004667 3.8e-213 745.3 631 60.5
Solyc11g065750.2 Solanum lycopersicum HOM05D004114 ORTHO05D004667 3.8e-213 745.3 662 59.5
Sopen11g025510 Solanum pennellii HOM05D004114 ORTHO05D004667 8.6e-213 744.2 662 59.5
HanXRQChr07g0197461 Helianthus annuus HOM05D004114 ORTHO05D004667 9.5e-212 740.7 635 59.8
AUR62000120 Chenopodium quinoa HOM05D004114 ORTHO05D004667 8.0e-211 737.6 645 59.2
Migut.D00601 Erythranthe guttata HOM05D004114 ORTHO05D004667 1.3e-208 730.3 651 57.6
Nitab4.5_0001587g0080 Nicotiana tabacum HOM05D004114 ORTHO05D004667 4.9e-208 728.4 655 58.9
MSTRG.12468 Avicennia marina HOM05D004114 ORTHO05D004667 6.3e-208 728.0 665 57.1
Ciclev10014795m.g Citrus clementina HOM05D004114 ORTHO05D004667 3.8e-205 718.8 542 67.9
SalBow6G3263 Salvia bowleyana HOM05D004114 ORTHO05D004667 7.3e-204 714.5 710 53.8
SGA_v2.0_scaffold42G16101 Striga asiatica HOM05D004114 ORTHO05D004667 9.5e-204 714.1 674 56.4
Lsat_1_v5_gn_2_97760 Lactuca sativa HOM05D004114 ORTHO05D004667 4.0e-202 708.8 636 58.6
Haze_23137 Corylus avellana HOM05D004114 ORTHO05D004667 8.9e-202 707.6 592 64.5
unitig_699.g19135 Utricularia gibba HOM05D004114 ORTHO05D004667 4.9e-200 701.8 664 56.0
EL10Ac4g10249 Beta vulgaris HOM05D004114 ORTHO05D004667 1.6e-195 686.8 651 56.1
EL10Ac4g10252 Beta vulgaris HOM05D004114 ORTHO05D004667 1.1e-194 684.1 651 55.9
Nn2g15370 Nelumbo nucifera HOM05D004114 ORTHO05D004667 3.4e-193 679.1 536 64.2
Oeu063322.2 Olea europaea HOM05D004114 ORTHO05D004667 1.3e-192 677.2 652 55.4
CDE05G0618 Ceratophyllum demersum HOM05D004114 ORTHO05D004667 2.2e-192 676.4 646 55.4
Oeu043295.1 Olea europaea HOM05D004114 ORTHO05D004667 1.3e-189 667.2 574 61.8
Psat3g081440 Pisum sativum HOM05D004114 ORTHO05D004667 2.1e-179 633.3 405 83.2
ATR0332G053 Amborella trichopoda HOM05D004114 ORTHO05D004667 1.3e-176 624.0 629 53.1
AUR62019301 Chenopodium quinoa HOM05D004114 ORTHO05D004667 3.5e-174 615.9 537 59.0
Eucgr.J00767 Eucalyptus grandis HOM05D004114 ORTHO05D004667 2.3e-173 613.2 531 58.8
Nitab4.5_0002741g0170 Nicotiana tabacum HOM05D004114 ORTHO05D004667 2.3e-173 613.2 554 58.7
ECA238G2774 Erigeron canadensis HOM05D004114 ORTHO05D004667 3.9e-173 612.5 641 53.0
CAN.G599.3 Capsicum annuum HOM05D004114 ORTHO05D004667 5.8e-169 598.6 512 60.7
CDE05G0406 Ceratophyllum demersum HOM05D004114 ORTHO05D004667 1.4e-167 594.0 652 50.6
HPP92_020382 Vanilla planifolia HOM05D004114 ORTHO05D004667 5.4e-167 592.0 629 50.4
Zm00001eb115370 Zea mays HOM05D004114 ORTHO05D004667 4.6e-166 589.0 630 50.3
SEGI_01130 Sequoiadendron giganteum HOM05D004114 ORTHO05D004667 2.6e-153 546.6 640 47.2
Mapoly0179s0020 Marchantia polymorpha HOM05D004114 ORTHO05D004667 1.3e-144 517.7 652 44.3
TAR636G2716 Trochodendron aralioides HOM05D004114 ORTHO05D004667 1.3e-144 517.7 402 65.2
Zm00001eb166150 Zea mays HOM05D004114 ORTHO05D004667 1.3e-141 507.7 630 46.0
Cpa.g.sc84.54 Carica papaya HOM05D004114 ORTHO05D004667 2.5e-140 503.4 435 59.8
Pp3c15_7590 Physcomitrium patens HOM05D004114 ORTHO05D004667 6.5e-136 488.8 643 43.2
Pp3c9_10010 Physcomitrium patens HOM05D004114 ORTHO05D004667 3.6e-134 483.0 643 42.6
SMO347G0278 Selaginella moellendorffii HOM05D004114 ORTHO05D004667 8.8e-133 478.4 654 43.7
AagrBONN_evm.TU.Sc2ySwM_340.1837 Anthoceros agrestis HOM05D004114 ORTHO05D004667 9.7e-132 474.9 640 41.1
Lj1A330G26 Lonicera japonica HOM05D004114 ORTHO05D004667 4.7e-126 456.1 398 63.6
Psat4g064240 Pisum sativum HOM05D004114 ORTHO05D004667 6.3e-123 445.7 430 60.2
Psat3g081480 Pisum sativum HOM05D003675 ORTHO05D004318 4.9e-99 366.3 234 82.1
BcaC01g01258 Brassica carinata HOM05D004114 ORTHO05D004667 8.3e-91 339.0 611 37.0
Actinidia06341 Actinidia chinensis HOM05D004114 ORTHO05D004667 6.8e-85 319.3 245 65.3
Lj1A330G24 Lonicera japonica HOM05D004114 ORTHO05D004667 1.0e-80 305.4 251 61.4
Psat5g252640 Pisum sativum HOM05D004114 ORTHO05D004667 4.7e-78 296.6 252 67.1
CBR_g56096 Chara braunii HOM05D004114 ORTHO05D004667 1.7e-67 261.5 436 38.3
C03p89880 Brassica napus HOM05D004114 ORTHO05D004667 1.2e-65 255.4 381 43.6
TAR636G0924 Trochodendron aralioides HOM05D004114 ORTHO05D004667 6.6e-64 249.6 211 63.0
BolC3t21309H Brassica oleracea HOM05D004114 ORTHO05D004667 1.1e-63 248.8 607 32.6
arahy.Tifrunner.gnm1.ann1.MJQJ0M Arachis hypogaea HOM05D004114 ORTHO05D004667 1.7e-59 235.0 203 63.1
Cpa.g.sc84.55 Carica papaya HOM05D004114 ORTHO05D004667 4.8e-54 216.9 182 63.2
C03p89900 Brassica napus HOM05D004114 ORTHO05D004667 5.1e-48 196.8 307 43.0
BcaC08g43303 Brassica carinata HOM05D004114 ORTHO05D004667 4.0e-45 187.2 292 40.4
arahy.Tifrunner.gnm1.ann1.HDR10P Arachis hypogaea HOM05D004114 ORTHO05D004667 2.2e-43 181.4 187 55.6
FAN23G2589 Fragaria x ananassa HOM05D004114 ORTHO05D004667 4.9e-43 180.3 133 69.2
BraA08t32330Z Brassica rapa HOM05D004114 ORTHO05D004667 8.1e-38 162.9 258 39.5
Os11g0638900 Oryza sativa ssp. japonica HOM05D004114 ORTHO05D004667 7.6e-36 156.4 175 44.6
Actinidia39399 Actinidia chinensis HOM05D004114 ORTHO05D004667 2.9e-35 154.5 236 44.1
Cre16.g664750 Chlamydomonas reinhardtii HOM05D004114 ORTHO05D004667 2.3e-32 144.8 604 25.3
Oeu054838.1 Olea europaea HOM05D004114 ORTHO05D004667 9.0e-29 132.9 108 61.1
FvH4_1g30480 Fragaria vesca HOM05D001826 ORTHO05D015538 1.2e-28 132.5 96 70.8
Haze_23136 Corylus avellana HOM05D004114 ORTHO05D004667 9.3e-26 122.9 93 63.4
FAN06G1142 Fragaria x ananassa HOM05D004114 ORTHO05D004667 1.9e-23 115.2 132 52.3
FAN19G0092 Fragaria x ananassa HOM05D004114 ORTHO05D004667 3.3e-23 114.4 163 47.9
FvH4_1g27340 Fragaria vesca HOM05D004114 ORTHO05D004667 3.7e-22 110.9 148 49.3
Actinidia06340 Actinidia chinensis HOM05D004114 ORTHO05D004667 6.3e-22 110.2 111 53.2
FvH4_7g05120 Fragaria vesca HOM05D004114 ORTHO05D004667 1.1e-21 109.4 86 66.3
FAN26G0366 Fragaria x ananassa HOM05D004114 ORTHO05D004667 2.4e-21 108.2 206 40.8
FvH4_1g27570 Fragaria vesca HOM05D004114 ORTHO05D004667 3.1e-21 107.8 78 71.8
FAN28G1325 Fragaria x ananassa HOM05D004114 ORTHO05D004667 2.1e-17 95.1 69 71.0
FAN19G1745 Fragaria x ananassa HOM05D004114 ORTHO05D004667 2.7e-17 94.7 67 74.6
Psat1g158360 Pisum sativum HOM05D000344 ORTHO05D025701 6.1e-17 93.6 64 75.0
Sabra16G0157900 Salix brachista HOM05D004114 ORTHO05D004667 1.4e-16 92.4 75 60.0
arahy.Tifrunner.gnm1.ann1.LY7CXU Arachis hypogaea HOM05D004114 ORTHO05D004667 1.8e-16 92.0 70 68.6
arahy.Tifrunner.gnm1.ann1.WKB59G Arachis hypogaea HOM05D004114 ORTHO05D004667 1.5e-15 89.0 66 68.2
arahy.Tifrunner.gnm1.ann1.KKW1YJ Arachis hypogaea HOM05D004114 ORTHO05D004667 6.9e-13 80.1 67 62.7
A08p02990 Brassica napus HOM05D004114 ORTHO05D004667 1.0e-11 76.3 73 56.2
C03p89890 Brassica napus HOM05D004114 ORTHO05D004667 1.1e-10 72.8 68 52.9
Zm00001eb110990 Zea mays HOM05D000534 ORTHO05D000389 3.6e-09 67.8 68 52.9
BcaB04g17225 Brassica carinata HOM05D004114 ORTHO05D004667 3.0e-08 64.7 52 59.6
EL10Ac3g06409 Beta vulgaris HOM05D004114 ORTHO05D004667 2.6e-07 61.6 59 45.8
Dinv18208 Davidia involucrata HOM05D000103 ORTHO05D000049 3.3e-07 61.2 41 65.9
C05p12260 Brassica napus HOM05D004114 ORTHO05D024134 7.4e-07 60.1 67 52.2
BolC2t10474H Brassica oleracea HOM05D004114 ORTHO05D024134 7.4e-07 60.1 65 52.3
BolC2t10479H Brassica oleracea HOM05D004114 ORTHO05D024134 7.4e-07 60.1 65 52.3
Cfa026112 Carpinus fangiana HOM05D004114 ORTHO05D125150 1.7e-06 58.9 146 28.1
arahy.Tifrunner.gnm1.ann1.9BGN79 Arachis hypogaea HOM05D002219 ORTHO05D002713 2.8e-06 58.2 35 82.9


User provided reference genes

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