Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_06401_v3 Cicer arietinum L. HOM05D005549 ORTHO05D006771 7.0e-198 693.7 347 100.0
Medtr5g096040 Medicago truncatula HOM05D005549 ORTHO05D006771 1.5e-171 606.3 346 87.0
TPR.G8611 Trifolium pratense HOM05D005549 ORTHO05D006771 1.3e-170 603.2 347 87.6
Psat2g007040 Pisum sativum HOM05D005549 ORTHO05D006771 2.4e-166 589.0 347 85.9
Glyma.09G077900 Glycine max HOM05D005549 ORTHO05D006771 1.6e-162 576.2 347 83.9
Glyma.15G218700 Glycine max HOM05D005549 ORTHO05D006771 3.1e-161 572.0 347 83.6
LjContig00081g0017630 Lotus japonicus HOM05D005549 ORTHO05D006771 2.9e-159 565.5 347 81.8
Lalb_Chr04g0247841 Lupinus albus HOM05D005549 ORTHO05D006771 3.5e-157 558.5 347 83.3
VMungo1127G1558 Vigna mungo HOM05D005549 ORTHO05D006771 6.0e-157 557.8 347 81.0
Phvul.011G182066 Phaseolus vulgaris HOM05D005549 ORTHO05D006771 3.2e-150 535.4 347 79.3
Phvul.011G182000 Phaseolus vulgaris HOM05D005549 ORTHO05D006771 6.0e-149 531.2 347 79.0
arahy.Tifrunner.gnm1.ann1.7VTX70 Arachis hypogaea HOM05D005549 ORTHO05D006771 1.3e-146 523.5 352 75.6
arahy.Tifrunner.gnm1.ann1.386HL4 Arachis hypogaea HOM05D005549 ORTHO05D006771 1.6e-146 523.1 352 75.6
arahy.Tifrunner.gnm1.ann1.BH3JLW Arachis hypogaea HOM05D005549 ORTHO05D006771 5.5e-142 508.1 341 76.0
Haze_07531 Corylus avellana HOM05D005549 ORTHO05D006771 4.5e-136 488.4 340 66.2
Dinv38568 Davidia involucrata HOM05D005549 ORTHO05D006771 4.2e-134 481.9 346 64.2
QL10p009538 Quercus lobata HOM05D005549 ORTHO05D006771 3.6e-133 478.8 346 65.3
Thecc.03G015300 Theobroma cacao HOM05D005549 ORTHO05D006771 6.1e-133 478.0 347 63.7
FAN08G3612 Fragaria x ananassa HOM05D005549 ORTHO05D006771 1.4e-132 476.9 347 64.8
Prupe.5G171000 Prunus persica HOM05D005549 ORTHO05D006771 1.4e-132 476.9 341 64.5
Actinidia19108 Actinidia chinensis HOM05D005549 ORTHO05D006771 1.8e-132 476.5 358 62.3
RcHm_v2.0_Chr7g0193241 Rosa chinensis HOM05D005549 ORTHO05D006771 1.8e-132 476.5 346 64.5
MD06G1171600 Malus domestica HOM05D005549 ORTHO05D006771 8.8e-132 474.2 344 63.4
Duzib205G0052 Durio zibethinus HOM05D005549 ORTHO05D006771 1.5e-131 473.4 346 62.7
FvH4_5g05540 Fragaria vesca HOM05D005549 ORTHO05D006771 3.3e-131 472.2 347 64.6
FAN18G0652 Fragaria x ananassa HOM05D005549 ORTHO05D006771 3.3e-131 472.2 347 64.6
Sabra14G0003300 Salix brachista HOM05D005549 ORTHO05D006771 2.2e-130 469.5 344 61.0
FAN18G1717 Fragaria x ananassa HOM05D005549 ORTHO05D006771 3.7e-130 468.8 347 64.3
Manes.06G106600 Manihot esculenta HOM05D005549 ORTHO05D006771 4.8e-130 468.4 344 64.2
vmacro16625 Vaccinium macrocarpon HOM05D005549 ORTHO05D006771 6.3e-130 468.0 359 61.3
Gorai.006G188700 Gossypium raimondii HOM05D005549 ORTHO05D006771 1.4e-129 466.8 345 63.5
Atru.chr9.2502 Acer truncatum HOM05D005549 ORTHO05D006771 2.4e-129 466.1 346 61.6
COL.COLO4_30080 Corchorus olitorius HOM05D005549 ORTHO05D006771 2.4e-129 466.1 346 67.3
Gohir.A09G171200 Gossypium hirsutum HOM05D005549 ORTHO05D006771 5.3e-129 464.9 345 63.8
Potri.014G000900 Populus trichocarpa HOM05D005549 ORTHO05D006771 5.3e-129 464.9 340 62.1
Rhsim12G0166100 Rhododendron simsii HOM05D005549 ORTHO05D006771 5.3e-129 464.9 350 61.7
Cc04_g12210 Coffea canephora HOM05D005549 ORTHO05D006771 2.6e-128 462.6 346 62.7
CiPaw.11G024000 Carya illinoinensis HOM05D005549 ORTHO05D006771 4.5e-128 461.8 345 62.6
Ciclev10020953m.g Citrus clementina HOM05D005549 ORTHO05D006771 4.5e-128 461.8 343 62.4
Gohir.D09G166900 Gossypium hirsutum HOM05D005549 ORTHO05D006771 1.3e-127 460.3 344 63.7
Aqoxy3G02864 Aquilegia oxysepala HOM05D005549 ORTHO05D006771 4.2e-126 455.3 342 65.5
Peaxi162Scf00075g00159 Petunia axillaris HOM05D005549 ORTHO05D006771 7.2e-126 454.5 346 61.0
TWI14G0382 Tripterygium wilfordii HOM05D005549 ORTHO05D006771 2.1e-125 453.0 343 60.9
PGSC0003DMG400028373 Solanum tuberosum HOM05D005549 ORTHO05D006771 4.7e-125 451.8 348 60.3
Hma1.2p1_0046F.1_g026660 Hydrangea macrophylla HOM05D005549 ORTHO05D006771 1.8e-124 449.9 395 54.9
TAR622G1114 Trochodendron aralioides HOM05D005549 ORTHO05D006771 3.0e-124 449.1 347 58.2
Sopen05g007130 Solanum pennellii HOM05D005549 ORTHO05D006771 5.2e-124 448.4 348 58.9
GSVIVG01007718001 Vitis vinifera HOM05D002875 ORTHO05D003215 6.7e-124 448.0 315 71.1
Nn4g25809 Nelumbo nucifera HOM05D005549 ORTHO05D006771 2.2e-122 443.0 348 57.8
Sopen05g007150 Solanum pennellii HOM05D005549 ORTHO05D006771 4.8e-122 441.8 344 59.0
CANSAT25G1426 Cannabis sativa HOM05D005549 ORTHO05D006771 1.1e-121 440.7 347 65.1
PGR031G3229 Punica granatum HOM05D005549 ORTHO05D006771 7.0e-121 438.0 348 61.5
CsaV3_1G001440 Cucumis sativus L. HOM05D005549 ORTHO05D006771 9.1e-121 437.6 345 66.1
PSO478G4565 Papaver somniferum HOM05D005549 ORTHO05D006771 1.3e-119 433.7 350 63.7
Aa31LG11G650 Aethionema arabicum HOM05D005549 ORTHO05D006771 1.5e-118 430.3 347 59.1
Eucgr.H00383 Eucalyptus grandis HOM05D005549 ORTHO05D006771 1.5e-118 430.3 349 62.2
Sc12g0005230 Simmondsia chinensis HOM05D005549 ORTHO05D006771 1.9e-118 429.9 343 60.9
AL8G40040 Arabidopsis lyrata HOM05D005549 ORTHO05D006771 1.6e-117 426.8 343 63.8
Lj3C19G0 Lonicera japonica HOM05D005549 ORTHO05D006771 1.6e-117 426.8 347 63.4
Nitab4.5_0002265g0110 Nicotiana tabacum HOM05D005549 ORTHO05D006771 4.7e-117 425.2 340 57.9
FAN13G1520 Fragaria x ananassa HOM05D005549 ORTHO05D006771 6.1e-117 424.9 345 59.7
Peaxi162Scf00141g00210 Petunia axillaris HOM05D005549 ORTHO05D006771 5.2e-116 421.8 344 57.6
MBI16_g05472_MAGBIO Magnolia biondii HOM05D005549 ORTHO05D006771 2.6e-115 419.5 343 58.6
MSTRG.26261 Avicennia marina HOM05D005549 ORTHO05D006771 3.4e-115 419.1 346 58.7
DCAR_016476 Daucus carota HOM05D005549 ORTHO05D006771 3.4e-115 419.1 346 62.7
ClCG06G017070 Citrullus lanatus HOM05D005549 ORTHO05D006771 4.4e-115 418.7 344 62.8
MELO3C017092.2 Cucumis melo HOM05D005549 ORTHO05D006771 1.7e-114 416.8 344 63.4
CARHR276820 Cardamine hirsuta HOM05D005549 ORTHO05D006771 2.2e-114 416.4 347 56.2
Hund09451 Selenicereus undatus HOM05D005549 ORTHO05D006771 2.2e-114 416.4 346 56.1
Sp2g26140 Schrenkiella parvula HOM05D005549 ORTHO05D006771 2.8e-114 416.0 348 57.5
AT5G63010 Arabidopsis thaliana HOM05D005549 ORTHO05D006771 4.8e-114 415.2 347 57.6
Nitab4.5_0001239g0020 Nicotiana tabacum HOM05D005549 ORTHO05D006771 4.8e-114 415.2 337 58.2
Thhalv10004522m.g Eutrema salsugineum HOM05D005549 ORTHO05D006771 8.3e-114 414.5 343 57.1
BraA06t25926Z Brassica rapa HOM05D005549 ORTHO05D006771 2.4e-113 412.9 341 62.8
Carub.0008s2372 Capsella rubella HOM05D005549 ORTHO05D006771 3.1e-113 412.5 343 56.9
AUR62008189 Chenopodium quinoa HOM05D005549 ORTHO05D006771 3.1e-113 412.5 342 57.0
Oeu024700.1 Olea europaea HOM05D005549 ORTHO05D006771 1.6e-112 410.2 351 62.4
Sed0023293 Sechium edule HOM05D005549 ORTHO05D006771 2.7e-112 409.5 346 61.6
EL10Ac5g10725 Beta vulgaris HOM05D005549 ORTHO05D006771 5.9e-112 408.3 346 56.6
Migut.K00304 Erythranthe guttata HOM05D005549 ORTHO05D006771 7.7e-112 407.9 357 56.0
BcaC01g02548 Brassica carinata HOM05D005549 ORTHO05D006771 1.0e-111 407.5 341 62.2
C03p63600 Brassica napus HOM05D005549 ORTHO05D006771 1.0e-111 407.5 341 62.2
BolC3t18618H Brassica oleracea HOM05D005549 ORTHO05D006771 1.0e-111 407.5 341 62.2
FAN04G2905 Fragaria x ananassa HOM05D005549 ORTHO05D006771 1.7e-111 406.8 349 57.6
ECA232G3151 Erigeron canadensis HOM05D005549 ORTHO05D006771 6.5e-111 404.8 345 61.7
A06p29790 Brassica napus HOM05D005549 ORTHO05D006771 3.2e-110 402.5 341 62.2
Ah.02g110600 Amaranthus hybridus HOM05D005549 ORTHO05D006771 1.6e-109 400.2 346 61.3
BcaB02g09715 Brassica carinata HOM05D005549 ORTHO05D006771 3.0e-108 396.0 349 60.5
unitig_37.g12682 Utricularia gibba HOM05D005549 ORTHO05D006771 5.7e-107 391.7 346 55.8
THA.LOC104818503 Tarenaya hassleriana HOM05D005549 ORTHO05D006771 1.7e-103 380.2 331 61.3
Lsat_1_v5_gn_4_75780 Lactuca sativa HOM05D005549 ORTHO05D006771 2.3e-103 379.8 349 59.0
Zm00001eb426250 Zea mays HOM05D005549 ORTHO05D006771 2.9e-103 379.4 346 53.8
Glyma.08G230900 Glycine max HOM05D005549 ORTHO05D006771 5.0e-103 378.6 225 88.9
SGA_v2.0_scaffold293G47425 Striga asiatica HOM05D005549 ORTHO05D006771 3.6e-101 372.5 346 58.4
SHI17110 Sapria himalayana HOM05D005549 ORTHO05D006771 3.4e-99 365.9 345 52.8
Os04g0507900 Oryza sativa ssp. japonica HOM05D005549 ORTHO05D006771 2.4e-97 359.8 348 50.0
arahy.Tifrunner.gnm1.ann1.BVT45G Arachis hypogaea HOM05D005549 ORTHO05D006771 1.5e-94 350.5 232 79.7
Eucgr.C01244 Eucalyptus grandis HOM05D005549 ORTHO05D006771 1.2e-93 347.4 345 49.3
HPP92_021890 Vanilla planifolia HOM05D005549 ORTHO05D006771 2.3e-92 343.2 349 53.9
arahy.Tifrunner.gnm1.ann1.8228C9 Arachis hypogaea HOM05D005549 ORTHO05D006771 6.4e-90 335.1 211 82.9
arahy.Tifrunner.gnm1.ann1.DCL1V8 Arachis hypogaea HOM05D005549 ORTHO05D006771 6.4e-90 335.1 211 82.9
Cpa.g.c31519.1 Carica papaya HOM05D005549 ORTHO05D006771 3.4e-83 312.8 239 60.3
HanXRQChr09g0272091 Helianthus annuus HOM05D005549 ORTHO05D006771 1.7e-82 310.5 274 62.0
Solyc05g012300.1 Solanum lycopersicum HOM05D005549 ORTHO05D006771 1.7e-79 300.4 224 61.6
CDE02G3271 Ceratophyllum demersum HOM05D005549 ORTHO05D006771 3.0e-79 299.7 341 46.3
Solyc05g012320.1 Solanum lycopersicum HOM05D005549 ORTHO05D006771 1.9e-78 297.0 220 61.8
Pp3c9_15370 Physcomitrium patens HOM05D005549 ORTHO05D006771 2.8e-77 293.1 346 43.6
Atru.chr9.2510 Acer truncatum HOM05D005549 ORTHO05D006771 4.9e-74 282.3 209 62.2
Potri.012G087300 Populus trichocarpa HOM05D005549 ORTHO05D006771 1.1e-73 281.2 218 59.2
SMO367G1205 Selaginella moellendorffii HOM05D005549 ORTHO05D006771 9.2e-73 278.1 344 43.0
ECA232G2898 Erigeron canadensis HOM05D005549 ORTHO05D006771 1.5e-70 270.8 222 65.3
AUR62030941 Chenopodium quinoa HOM05D005549 ORTHO05D006771 2.5e-70 270.0 218 57.3
Mapoly0027s0008 Marchantia polymorpha HOM05D005549 ORTHO05D006771 4.3e-70 269.2 383 36.8
CSS0043757 Camellia sinensis var. sinensis HOM05D005549 ORTHO05D006771 1.2e-69 267.7 222 58.6
Peaxi162Scf00141g10027 Petunia axillaris HOM05D005549 ORTHO05D006771 2.2e-66 256.9 185 62.2
ATR0807G008 Amborella trichopoda HOM05D005549 ORTHO05D006771 8.4e-66 255.0 221 50.7
AagrBONN_evm.TU.Sc2ySwM_228.3282 Anthoceros agrestis HOM05D005549 ORTHO05D006771 3.5e-64 249.6 375 36.8
Gorai.001G151900 Gossypium raimondii HOM05D005549 ORTHO05D006771 1.3e-55 221.1 186 59.1
MD14G1177100 Malus domestica HOM05D005549 ORTHO05D006771 3.3e-54 216.5 221 51.6
Gohir.D07G139801 Gossypium hirsutum HOM05D005549 ORTHO05D006771 5.6e-54 215.7 186 58.1
HanXRQChr16g0506951 Helianthus annuus HOM05D005549 ORTHO05D006771 2.1e-53 213.8 195 53.3
HanXRQChr04g0107691 Helianthus annuus HOM05D005549 ORTHO05D006771 8.1e-53 211.8 182 67.6
MD06G1171300 Malus domestica HOM05D005549 ORTHO05D006771 5.3e-52 209.1 315 37.5
Eucgr.H00387 Eucalyptus grandis HOM05D005549 ORTHO05D006771 1.3e-50 204.5 201 50.7
CBR_g24288 Chara braunii HOM05D005549 ORTHO05D006771 9.0e-44 181.8 510 27.3
TPR.G8752 Trifolium pratense HOM05D005549 ORTHO05D006771 3.8e-42 176.4 87 92.0
Atru.chr9.2511 Acer truncatum HOM05D005549 ORTHO05D006771 6.5e-34 149.1 125 54.4
Cre10.g434300 Chlamydomonas reinhardtii HOM05D005549 ORTHO05D006771 1.0e-31 141.7 302 36.8
Sabra12G0062500 Salix brachista HOM05D005549 ORTHO05D006771 1.8e-28 131.0 101 60.4
MCO16G545 Micromonas commoda HOM05D005549 ORTHO05D006771 4.5e-27 126.3 427 26.7
Gohir.D12G085501 Gossypium hirsutum HOM05D005549 ORTHO05D006771 1.7e-26 124.4 140 48.6
ATR0807G036 Amborella trichopoda HOM05D005549 ORTHO05D006771 3.9e-23 113.2 99 53.5
Cpa.g.c31519.2 Carica papaya HOM05D005549 ORTHO05D006771 1.1e-22 111.7 85 58.8
Lj5C126T17 Lonicera japonica HOM05D005549 ORTHO05D006771 2.7e-16 90.5 96 46.9
MD14G1177000 Malus domestica HOM05D005549 ORTHO05D006771 6.1e-16 89.4 64 57.8
Nitab4.5_0003499g0020 Nicotiana tabacum HOM05D005549 ORTHO05D006771 1.5e-11 74.7 99 38.4


User provided reference genes

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