Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_06317_v3 Cicer arietinum L. HOM05D006489 ORTHO05D007556 1.8e-279 965.3 502 100.0
TPR.G1166 Trifolium pratense HOM05D006489 ORTHO05D007556 2.0e-206 722.6 508 74.6
Ca_25386_v3 Cicer arietinum L. HOM05D006489 ORTHO05D007556 8.1e-187 657.5 505 72.9
Medtr5g092580 Medicago truncatula HOM05D006489 ORTHO05D007556 4.0e-186 655.2 587 63.0
Psat2g011040 Pisum sativum HOM05D006489 ORTHO05D007556 2.3e-173 612.8 515 67.6
LjContig00272g0011286 Lotus japonicus HOM05D006489 ORTHO05D007556 1.1e-154 550.8 516 61.2
TPR.G36685 Trifolium pratense HOM05D006489 ORTHO05D007556 5.0e-144 515.4 575 57.4
Medtr6g033325 Medicago truncatula HOM05D006489 ORTHO05D007556 1.4e-135 487.3 610 53.4
VMungo0647G1504 Vigna mungo HOM05D006489 ORTHO05D007556 2.0e-129 466.8 541 52.7
Glyma.02G290600 Glycine max HOM05D006489 ORTHO05D007556 1.9e-127 460.3 551 52.3
Phvul.008G267300 Phaseolus vulgaris HOM05D006489 ORTHO05D007556 4.0e-125 452.6 550 50.5
Psat1g097920 Pisum sativum HOM05D006489 ORTHO05D007556 4.8e-123 445.7 671 46.6
arahy.Tifrunner.gnm1.ann1.I0Q6ZZ Arachis hypogaea HOM05D006489 ORTHO05D007556 1.5e-116 424.1 566 48.4
Lalb_Chr17g0348451 Lupinus albus HOM05D006489 ORTHO05D007556 3.4e-116 422.9 640 44.7
arahy.Tifrunner.gnm1.ann1.X6VDEX Arachis hypogaea HOM05D006489 ORTHO05D007556 6.6e-112 408.7 576 48.3
Lalb_Chr10g0106941 Lupinus albus HOM05D006489 ORTHO05D007556 3.7e-107 392.9 380 57.9
Haze_09673 Corylus avellana HOM05D006489 ORTHO05D007556 8.3e-107 391.7 527 46.9
Cfa020351 Carpinus fangiana HOM05D006489 ORTHO05D007556 3.0e-96 356.7 558 43.4
CiPaw.12G129400 Carya illinoinensis HOM05D006489 ORTHO05D007556 5.0e-96 355.9 532 46.2
QL08p010454 Quercus lobata HOM05D006489 ORTHO05D007556 1.9e-95 354.0 512 46.1
Glyma.14G024100 Glycine max HOM05D006489 ORTHO05D007556 5.8e-92 342.4 310 59.7
Ciclev10008166m.g Citrus clementina HOM05D006489 ORTHO05D007556 1.0e-88 331.6 535 41.5
Duzib213G0414 Durio zibethinus HOM05D006489 ORTHO05D007556 3.1e-85 320.1 529 41.8
Actinidia35341 Actinidia chinensis HOM05D006489 ORTHO05D007556 1.6e-81 307.8 531 42.2
Sabra11G0125100 Salix brachista HOM05D006489 ORTHO05D007556 1.1e-79 301.6 537 40.2
TAR627G0165 Trochodendron aralioides HOM05D006489 ORTHO05D007556 7.3e-79 298.9 527 40.6
Prupe.4G212300 Prunus persica HOM05D006489 ORTHO05D007556 1.8e-77 294.3 522 42.1
Gorai.004G027700 Gossypium raimondii HOM05D006489 ORTHO05D007556 8.9e-77 292.0 525 40.0
TWI15G0832 Tripterygium wilfordii HOM05D006489 ORTHO05D007556 8.9e-77 292.0 535 40.2
Cpa.g.sc97.9 Carica papaya HOM05D006489 ORTHO05D007556 2.0e-76 290.8 524 40.6
Gohir.D08G030200 Gossypium hirsutum HOM05D006489 ORTHO05D007556 2.0e-76 290.8 525 41.1
MD03G1201600 Malus domestica HOM05D006489 ORTHO05D007556 5.8e-76 289.3 532 43.4
vmacro09717 Vaccinium macrocarpon HOM05D006489 ORTHO05D007556 7.6e-76 288.9 520 41.9
COL.COLO4_19762 Corchorus olitorius HOM05D006489 ORTHO05D007556 1.7e-75 287.7 469 40.9
Dinv22265 Davidia involucrata HOM05D006489 ORTHO05D007556 6.4e-75 285.8 508 41.3
Gohir.A08G019600 Gossypium hirsutum HOM05D006489 ORTHO05D007556 1.7e-72 277.7 525 40.8
Potri.011G139200 Populus trichocarpa HOM05D006489 ORTHO05D007556 3.0e-72 276.9 538 37.9
Manes.03G129000 Manihot esculenta HOM05D006489 ORTHO05D007556 1.1e-71 275.0 543 40.5
MBI02_g07154_MAGBIO Magnolia biondii HOM05D006489 ORTHO05D007556 1.2e-70 271.6 498 40.6
Peaxi162Scf00964g00023 Petunia axillaris HOM05D006489 ORTHO05D007556 3.1e-69 266.9 515 39.4
Hma1.2p1_1162F.1_g262610 Hydrangea macrophylla HOM05D006489 ORTHO05D007556 1.3e-67 261.5 532 38.3
MBI18_g45561_MAGBIO Magnolia biondii HOM05D006489 ORTHO05D007556 1.3e-67 261.5 539 37.7
Oeu062694.1 Olea europaea HOM05D006489 ORTHO05D007556 1.7e-67 261.2 516 40.3
MELO3C013233.2 Cucumis melo HOM05D006489 ORTHO05D007556 2.4e-66 257.3 523 39.0
AL3G34270 Arabidopsis lyrata HOM05D006489 ORTHO05D007556 2.1e-65 254.2 519 38.2
CSS0036232 Camellia sinensis var. sinensis HOM05D006489 ORTHO05D007556 7.8e-65 252.3 554 39.5
FAN25G3282 Fragaria x ananassa HOM05D006489 ORTHO05D007556 7.8e-65 252.3 430 41.9
CSS0017234 Camellia sinensis var. sinensis HOM05D006489 ORTHO05D007556 3.0e-64 250.4 554 39.4
DCAR_022559 Daucus carota HOM05D006489 ORTHO05D007556 1.9e-63 247.7 539 37.7
Sed0018772 Sechium edule HOM05D006489 ORTHO05D007556 4.8e-62 243.0 531 37.3
Aa31LG8G7280 Aethionema arabicum HOM05D006489 ORTHO05D007556 6.2e-62 242.7 525 35.6
RhsimUnG0250900 Rhododendron simsii HOM05D006489 ORTHO05D007556 6.2e-62 242.7 654 32.6
Carub.0003s2045 Capsella rubella HOM05D006489 ORTHO05D007556 1.4e-61 241.5 506 36.4
FAN21G0022 Fragaria x ananassa HOM05D006489 ORTHO05D007556 5.3e-61 239.6 459 38.8
GSVIVG01037644001 Vitis vinifera HOM05D006489 ORTHO05D007556 9.0e-61 238.8 522 37.2
AT3G20490 Arabidopsis thaliana HOM05D006489 ORTHO05D007556 1.5e-60 238.0 523 36.7
Solyc07g064570.3 Solanum lycopersicum HOM05D006489 ORTHO05D007556 1.5e-60 238.0 533 36.8
ClCG05G014300 Citrullus lanatus HOM05D006489 ORTHO05D007556 2.0e-60 237.7 522 37.5
CANSAT11G2482 Cannabis sativa HOM05D006489 ORTHO05D007556 3.4e-60 236.9 564 37.1
FvH4_3g22630 Fragaria vesca HOM05D006489 ORTHO05D007556 9.9e-60 235.3 459 38.3
RcHm_v2.0_Chr5g0039401 Rosa chinensis HOM05D006489 ORTHO05D007556 9.9e-60 235.3 459 39.0
Sopen07g032750 Solanum pennellii HOM05D006489 ORTHO05D007556 2.9e-59 233.8 531 36.9
HanXRQChr03g0076541 Helianthus annuus HOM05D006489 ORTHO05D007556 6.4e-59 232.6 531 37.1
Cc09_g09720 Coffea canephora HOM05D006489 ORTHO05D007556 8.4e-59 232.3 541 34.0
CARHR096250 Cardamine hirsuta HOM05D006489 ORTHO05D007556 1.1e-58 231.9 523 36.1
Atru.chr2.3342 Acer truncatum HOM05D006489 ORTHO05D007556 7.1e-58 229.2 355 41.1
Lsat_1_v5_gn_9_94040 Lactuca sativa HOM05D006489 ORTHO05D007556 9.3e-58 228.8 533 37.0
Hund23251 Selenicereus undatus HOM05D006489 ORTHO05D007556 1.6e-57 228.0 483 34.8
BcaB06g27045 Brassica carinata HOM05D006489 ORTHO05D007556 3.0e-56 223.8 556 33.5
AUR62015766 Chenopodium quinoa HOM05D006489 ORTHO05D007556 3.0e-56 223.8 614 33.4
CAN.G337.129 Capsicum annuum HOM05D006489 ORTHO05D007556 3.9e-56 223.4 585 32.5
Aqoxy1G03602 Aquilegia oxysepala HOM05D006489 ORTHO05D007556 5.1e-56 223.0 534 35.0
PGSC0003DMG400022321 Solanum tuberosum HOM05D006489 ORTHO05D007556 6.7e-56 222.6 531 35.8
BraA04t16706Z Brassica rapa HOM05D006489 ORTHO05D007556 1.1e-55 221.9 517 34.6
PGR083G1541 Punica granatum HOM05D006489 ORTHO05D007556 2.5e-55 220.7 506 36.0
Hma1.2p1_1162F.1_g262600 Hydrangea macrophylla HOM05D006489 ORTHO05D007556 5.6e-55 219.5 414 40.1
Sc03g0008610 Simmondsia chinensis HOM05D006489 ORTHO05D007556 7.4e-55 219.2 412 37.4
HanXRQChr08g0220561 Helianthus annuus HOM05D006489 ORTHO05D007556 8.1e-54 215.7 535 36.1
SGA_v2.0_scaffold80G25948 Striga asiatica HOM05D006489 ORTHO05D007556 1.1e-53 215.3 514 36.4
Thecc.07G037900 Theobroma cacao HOM05D006489 ORTHO05D007556 4.0e-53 213.4 360 42.5
ECA240G0124 Erigeron canadensis HOM05D006489 ORTHO05D007556 4.5e-52 209.9 549 35.5
Migut.M01768 Erythranthe guttata HOM05D006489 ORTHO05D007556 5.8e-52 209.5 523 35.8
THA.LOC104817868 Tarenaya hassleriana HOM05D006489 ORTHO05D007556 9.9e-52 208.8 506 35.2
CsaV3_7G021220 Cucumis sativus L. HOM05D006489 ORTHO05D007556 1.3e-51 208.4 507 36.5
Nitab4.5_0011175g0010 Nicotiana tabacum HOM05D006489 ORTHO05D007556 6.4e-51 206.1 469 35.2
Nitab4.5_0001913g0140 Nicotiana tabacum HOM05D006489 ORTHO05D007556 1.4e-50 204.9 471 35.0
ATR0752G219 Amborella trichopoda HOM05D006489 ORTHO05D007556 2.5e-50 204.1 519 32.9
Sed0021471 Sechium edule HOM05D006489 ORTHO05D007556 7.1e-50 202.6 411 36.3
Eucgr.F00766 Eucalyptus grandis HOM05D006489 ORTHO05D007556 9.3e-50 202.2 400 35.0
Atru.BG.151.p Acer truncatum HOM05D006489 ORTHO05D007556 2.7e-49 200.7 408 36.0
EL10Ac4g07823 Beta vulgaris HOM05D006489 ORTHO05D007556 6.7e-48 196.1 591 31.6
CDE02G1695 Ceratophyllum demersum HOM05D006489 ORTHO05D007556 8.2e-46 189.1 556 32.6
A04p10340 Brassica napus HOM05D006489 ORTHO05D007556 4.0e-45 186.8 615 30.4
BcaC02g09533 Brassica carinata HOM05D006489 ORTHO05D007556 1.2e-44 185.3 614 30.1
BolC4t25966H Brassica oleracea HOM05D006489 ORTHO05D007556 1.2e-44 185.3 614 30.1
C04p43850 Brassica napus HOM05D006489 ORTHO05D007556 2.6e-44 184.1 612 29.9
Nn1g03547 Nelumbo nucifera HOM05D006489 ORTHO05D007556 1.0e-43 182.2 528 31.2
Lj1A872T56 Lonicera japonica HOM05D006489 ORTHO05D007556 2.9e-43 180.6 372 36.3
HPP92_013323 Vanilla planifolia HOM05D006489 ORTHO05D007556 1.9e-42 177.9 565 31.0
PSO541G0970 Papaver somniferum HOM05D006489 ORTHO05D007556 7.1e-42 176.0 486 31.1
CDE05G3553 Ceratophyllum demersum HOM05D006489 ORTHO05D007556 2.1e-41 174.5 553 31.3
AUR62020449 Chenopodium quinoa HOM05D006489 ORTHO05D007556 8.7e-40 169.1 575 30.3
PSO675G7358 Papaver somniferum HOM05D006489 ORTHO05D007556 8.7e-40 169.1 381 33.3
Thhalv10028177m.g Eutrema salsugineum HOM05D006489 ORTHO05D007556 1.0e-35 155.6 513 31.0
FAN16G1490 Fragaria x ananassa HOM05D006489 ORTHO05D007556 1.1e-34 152.1 254 42.1
Lsat_1_v5_gn_7_108561 Lactuca sativa HOM05D006489 ORTHO05D007556 2.2e-30 137.9 516 31.0
Sp7g05570 Schrenkiella parvula HOM05D006489 ORTHO05D007556 2.2e-30 137.9 673 26.4
HanXRQChr11g0337701 Helianthus annuus HOM05D006489 ORTHO05D007556 6.9e-29 132.9 526 30.2
unitig_62.g23281 Utricularia gibba HOM05D008272 ORTHO05D010429 6.9e-29 132.9 489 29.2
Zm00001eb431300 Zea mays HOM05D006489 ORTHO05D007556 2.0e-28 131.3 541 28.7
SEGI_05401 Sequoiadendron giganteum HOM05D006489 ORTHO05D007556 5.9e-28 129.8 556 29.0
Os04g0625100 Oryza sativa ssp. japonica HOM05D006489 ORTHO05D007556 1.7e-27 128.3 494 28.5
ECA236G1547 Erigeron canadensis HOM05D006489 ORTHO05D007556 2.0e-23 114.8 214 37.9
Psat0s2568g0040 Pisum sativum HOM05D006489 ORTHO05D007556 7.0e-21 106.3 81 69.1
Actinidia10733 Actinidia chinensis HOM05D006489 ORTHO05D007556 2.9e-19 100.9 239 34.7
Lj8A169G92 Lonicera japonica HOM05D006489 ORTHO05D007556 3.7e-14 84.0 72 55.6


User provided reference genes

Program Settings