Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_06271_v3 Cicer arietinum L. HOM05D005394 ORTHO05D006909 0.0e+00 1541.2 831 100.0
Psat0s1569g0040 Pisum sativum HOM05D005394 ORTHO05D006909 0.0e+00 1469.1 831 93.3
Medtr5g091250 Medicago truncatula HOM05D005394 ORTHO05D006909 0.0e+00 1459.5 831 92.3
arahy.Tifrunner.gnm1.ann1.3I6JR3 Arachis hypogaea HOM05D005394 ORTHO05D006909 0.0e+00 1349.0 842 85.2
arahy.Tifrunner.gnm1.ann1.C2BK4Q Arachis hypogaea HOM05D005394 ORTHO05D006909 0.0e+00 1340.9 855 84.0
VMungo0647G2040 Vigna mungo HOM05D005394 ORTHO05D006909 0.0e+00 1340.9 833 85.7
Glyma.14G029500 Glycine max HOM05D005394 ORTHO05D006909 0.0e+00 1332.0 836 85.5
Phvul.008G193314 Phaseolus vulgaris HOM05D005394 ORTHO05D006909 0.0e+00 1330.9 833 85.1
LjContig00049g0014840 Lotus japonicus HOM05D005394 ORTHO05D006909 0.0e+00 1324.3 830 86.3
Lalb_Chr17g0348211 Lupinus albus HOM05D005394 ORTHO05D006909 0.0e+00 1324.3 823 85.4
Glyma.02G286300 Glycine max HOM05D005394 ORTHO05D006909 0.0e+00 1305.0 834 85.0
Prupe.3G175300 Prunus persica HOM05D005394 ORTHO05D006909 0.0e+00 1273.1 831 80.0
MD09G1149900 Malus domestica HOM05D005394 ORTHO05D006909 0.0e+00 1250.3 828 78.5
ClCG02G018460 Citrullus lanatus HOM05D005394 ORTHO05D006909 0.0e+00 1243.4 857 77.7
Ciclev10030699m.g Citrus clementina HOM05D005394 ORTHO05D006909 0.0e+00 1241.1 852 76.6
RcHm_v2.0_Chr2g0151781 Rosa chinensis HOM05D005394 ORTHO05D006909 0.0e+00 1239.6 817 79.4
FAN14G2062 Fragaria x ananassa HOM05D005394 ORTHO05D006909 0.0e+00 1238.0 816 78.9
FvH4_6g38530 Fragaria vesca HOM05D005394 ORTHO05D006909 0.0e+00 1236.5 816 78.8
FAN05G5751 Fragaria x ananassa HOM05D005394 ORTHO05D006909 0.0e+00 1235.3 816 78.9
FAN09G4660 Fragaria x ananassa HOM05D005394 ORTHO05D006909 0.0e+00 1231.1 816 78.7
FAN02G2503 Fragaria x ananassa HOM05D005394 ORTHO05D006909 0.0e+00 1229.9 816 78.6
Atru.BG.36.p Acer truncatum HOM05D005394 ORTHO05D006909 0.0e+00 1222.6 787 80.4
Thecc.04G175300 Theobroma cacao HOM05D005394 ORTHO05D006909 0.0e+00 1221.5 839 78.7
Sabra05G0154700 Salix brachista HOM05D005394 ORTHO05D006909 0.0e+00 1219.9 850 76.5
CsaV3_6G013780 Cucumis sativus L. HOM05D005394 ORTHO05D006909 0.0e+00 1212.6 846 75.5
Sed0020842 Sechium edule HOM05D005394 ORTHO05D006909 0.0e+00 1211.8 823 77.2
MD17G1137000 Malus domestica HOM05D005394 ORTHO05D006909 0.0e+00 1204.5 830 77.5
COL.COLO4_10088 Corchorus olitorius HOM05D005394 ORTHO05D006909 0.0e+00 1201.4 837 77.4
Potri.005G203900 Populus trichocarpa HOM05D005394 ORTHO05D006909 0.0e+00 1199.9 829 76.5
TWI14G0801 Tripterygium wilfordii HOM05D005394 ORTHO05D006909 0.0e+00 1199.5 830 75.8
Cfa023066 Carpinus fangiana HOM05D005394 ORTHO05D006909 0.0e+00 1196.4 829 77.0
Manes.01G130300 Manihot esculenta HOM05D005394 ORTHO05D006909 0.0e+00 1196.0 848 76.1
CANSAT64G3008 Cannabis sativa HOM05D005394 ORTHO05D006909 0.0e+00 1191.4 832 77.2
MELO3C019674.2 Cucumis melo HOM05D005394 ORTHO05D006909 0.0e+00 1191.4 846 75.4
Gohir.A10G140600 Gossypium hirsutum HOM05D005394 ORTHO05D006909 0.0e+00 1188.7 839 76.3
Gorai.011G139100 Gossypium raimondii HOM05D005394 ORTHO05D006909 0.0e+00 1187.6 839 76.4
Sed0013102 Sechium edule HOM05D005394 ORTHO05D006909 0.0e+00 1183.7 848 74.9
GSVIVG01020852001 Vitis vinifera HOM05D005394 ORTHO05D006909 0.0e+00 1180.6 828 74.5
TAR626G0164 Trochodendron aralioides HOM05D005394 ORTHO05D006909 0.0e+00 1179.1 846 73.4
Gohir.D10G126100 Gossypium hirsutum HOM05D005394 ORTHO05D006909 0.0e+00 1178.7 839 76.0
Manes.02G088100 Manihot esculenta HOM05D005394 ORTHO05D006909 0.0e+00 1174.8 842 75.5
Dinv07076 Davidia involucrata HOM05D005394 ORTHO05D006909 0.0e+00 1174.1 795 78.0
Haze_13523 Corylus avellana HOM05D005394 ORTHO05D006909 0.0e+00 1170.2 938 68.8
PGR042G0197 Punica granatum HOM05D005394 ORTHO05D006909 0.0e+00 1164.1 832 75.4
CiPaw.03G191600 Carya illinoinensis HOM05D005394 ORTHO05D006909 0.0e+00 1156.4 828 75.2
Nn8g41245 Nelumbo nucifera HOM05D005394 ORTHO05D006909 0.0e+00 1156.4 835 72.9
QL08p044839 Quercus lobata HOM05D005394 ORTHO05D006909 0.0e+00 1151.0 871 73.6
Potri.002G058300 Populus trichocarpa HOM05D005394 ORTHO05D006909 0.0e+00 1148.3 820 74.6
Solyc10g007720.4 Solanum lycopersicum HOM05D005394 ORTHO05D006909 0.0e+00 1148.3 845 72.0
Duzib212G0967 Durio zibethinus HOM05D005394 ORTHO05D006909 0.0e+00 1146.3 842 75.3
THA.LOC104825567 Tarenaya hassleriana HOM05D005394 ORTHO05D006909 0.0e+00 1146.0 785 75.2
Aqoxy1G01759 Aquilegia oxysepala HOM05D005394 ORTHO05D006909 0.0e+00 1144.4 837 71.8
Sopen10g003630 Solanum pennellii HOM05D005394 ORTHO05D006909 0.0e+00 1143.3 845 71.7
Sc06g0007690 Simmondsia chinensis HOM05D005394 ORTHO05D006909 0.0e+00 1140.6 820 71.5
Peaxi162Scf00035g02520 Petunia axillaris HOM05D005394 ORTHO05D006909 0.0e+00 1140.2 831 73.5
PGSC0003DMG400021243 Solanum tuberosum HOM05D005394 ORTHO05D006909 0.0e+00 1139.0 844 71.4
CSS0015023 Camellia sinensis var. sinensis HOM05D005394 ORTHO05D006909 0.0e+00 1136.7 843 73.9
CSS0042292 Camellia sinensis var. sinensis HOM05D005394 ORTHO05D006909 0.0e+00 1133.6 843 73.7
Nitab4.5_0003104g0050 Nicotiana tabacum HOM05D005394 ORTHO05D006909 0.0e+00 1129.8 836 72.1
MSTRG.15035 Avicennia marina HOM05D005394 ORTHO05D006909 0.0e+00 1126.3 838 70.8
HanXRQChr16g0503181 Helianthus annuus HOM05D005394 ORTHO05D006909 0.0e+00 1126.3 841 71.2
MBI16_g26174_MAGBIO Magnolia biondii HOM05D005394 ORTHO05D006909 0.0e+00 1125.5 836 70.3
EL10Ac9g22847 Beta vulgaris HOM05D005394 ORTHO05D006909 0.0e+00 1120.9 832 70.7
HanXRQChr09g0276121 Helianthus annuus HOM05D005394 ORTHO05D006909 0.0e+00 1119.0 833 71.4
HanXRQChr17g0559821 Helianthus annuus HOM05D005394 ORTHO05D006909 0.0e+00 1118.2 841 71.5
Nitab4.5_0002209g0020 Nicotiana tabacum HOM05D005394 ORTHO05D006909 0.0e+00 1115.5 836 72.2
PSO675G3098 Papaver somniferum HOM05D005394 ORTHO05D006909 0.0e+00 1114.0 855 68.4
AL2G26730 Arabidopsis lyrata HOM05D005394 ORTHO05D006909 0.0e+00 1113.6 828 71.4
Aa31sc829G10 Aethionema arabicum HOM05D005394 ORTHO05D006909 0.0e+00 1112.1 826 69.6
DCAR_009812 Daucus carota HOM05D005394 ORTHO05D006909 0.0e+00 1111.7 829 70.8
PSO541G2917 Papaver somniferum HOM05D005394 ORTHO05D006909 0.0e+00 1109.7 855 68.4
C06p42040 Brassica napus HOM05D005394 ORTHO05D006909 0.0e+00 1103.6 822 70.2
Sabra02G0047500 Salix brachista HOM05D005394 ORTHO05D006909 0.0e+00 1102.8 838 71.4
BcaC08g46216 Brassica carinata HOM05D005394 ORTHO05D006909 0.0e+00 1102.0 819 70.3
A07p34470 Brassica napus HOM05D005394 ORTHO05D006909 0.0e+00 1101.3 822 70.2
Sp5g22930 Schrenkiella parvula HOM05D005394 ORTHO05D006909 0.0e+00 1099.7 830 69.9
BolC6t39222H Brassica oleracea HOM05D005394 ORTHO05D006909 0.0e+00 1099.3 821 70.0
AT1G67930 Arabidopsis thaliana HOM05D005394 ORTHO05D006909 0.0e+00 1095.9 835 69.9
Carub.0002s1442 Capsella rubella HOM05D005394 ORTHO05D006909 0.0e+00 1095.1 828 69.8
BolC6t38908H Brassica oleracea HOM05D005394 ORTHO05D006909 0.0e+00 1094.0 807 71.0
Cc05_g09680 Coffea canephora HOM05D005394 ORTHO05D006909 0.0e+00 1094.0 844 70.5
Lsat_1_v5_gn_8_142320 Lactuca sativa HOM05D005394 ORTHO05D006909 0.0e+00 1093.6 847 69.9
C06p38110 Brassica napus HOM05D005394 ORTHO05D006909 0.0e+00 1091.3 807 71.1
BcaC08g46016 Brassica carinata HOM05D005394 ORTHO05D006909 0.0e+00 1090.1 807 71.0
CARHR060570 Cardamine hirsuta HOM05D005394 ORTHO05D006909 0.0e+00 1083.9 834 68.7
Oeu020932.1 Olea europaea HOM05D005394 ORTHO05D006909 0.0e+00 1082.8 894 65.7
Ah.01g001930 Amaranthus hybridus HOM05D005394 ORTHO05D006909 0.0e+00 1075.8 825 68.7
unitig_46.g18287 Utricularia gibba HOM05D005394 ORTHO05D006909 1.9e-310 1068.9 833 67.9
CDE02G3161 Ceratophyllum demersum HOM05D005394 ORTHO05D006909 1.4e-308 1062.8 827 68.1
BcaB03g15386 Brassica carinata HOM05D005394 ORTHO05D006909 4.2e-305 1051.2 757 70.9
BraA07t31074Z Brassica rapa HOM05D005394 ORTHO05D006909 7.9e-304 1047.0 731 72.5
SGA_v2.0_scaffold4G02121 Striga asiatica HOM05D005394 ORTHO05D006909 7.9e-304 1047.0 908 62.9
Eucgr.A02013 Eucalyptus grandis HOM05D005394 ORTHO05D006909 1.3e-301 1039.6 670 76.3
Migut.E01770 Erythranthe guttata HOM05D005394 ORTHO05D006909 6.9e-300 1033.9 834 66.4
SHI02103 Sapria himalayana HOM05D005394 ORTHO05D006909 1.0e-290 1003.4 842 64.4
HPP92_002195 Vanilla planifolia HOM05D005394 ORTHO05D006909 1.3e-290 1003.0 817 63.5
BcaB03g15148 Brassica carinata HOM05D005394 ORTHO05D006909 8.4e-290 1000.3 668 74.1
ECA233G4606 Erigeron canadensis HOM05D005394 ORTHO05D006909 1.9e-289 999.2 751 71.4
AUR62015139 Chenopodium quinoa HOM05D005394 ORTHO05D006909 1.0e-287 993.4 655 75.9
AUR62017599 Chenopodium quinoa HOM05D005394 ORTHO05D006909 1.3e-285 986.5 655 75.4
SEGI_12117 Sequoiadendron giganteum HOM05D005394 ORTHO05D006909 1.6e-285 986.1 822 63.5
vmacro00998 Vaccinium macrocarpon HOM05D005394 ORTHO05D006909 1.8e-284 982.6 928 61.0
ATR0605G001 Amborella trichopoda HOM05D005394 ORTHO05D006909 1.3e-282 976.5 758 67.8
Thhalv10018283m.g Eutrema salsugineum HOM05D005394 ORTHO05D006909 1.3e-274 949.9 625 74.9
Lj1A601G23 Lonicera japonica HOM05D005394 ORTHO05D006909 8.5e-274 947.2 639 75.4
Mapoly0082s0010 Marchantia polymorpha HOM05D005394 ORTHO05D006909 4.1e-268 928.3 785 59.6
Zm00001eb286850 Zea mays HOM05D005394 ORTHO05D006909 1.0e-266 923.7 821 61.6
Pp3c10_16550 Physcomitrium patens HOM05D005394 ORTHO05D006909 1.3e-261 906.7 816 57.5
Pp3c14_13420 Physcomitrium patens HOM05D005394 ORTHO05D006909 1.4e-260 903.3 821 56.5
CAN.G2018.3 Capsicum annuum HOM05D005394 ORTHO05D006909 2.0e-259 899.4 568 78.2
SMO266G0070 Selaginella moellendorffii HOM05D005394 ORTHO05D006909 9.1e-252 874.0 787 56.8
CBR_g53704 Chara braunii HOM05D005394 ORTHO05D006909 1.5e-233 813.5 800 53.1
Actinidia25071 Actinidia chinensis HOM05D005394 ORTHO05D006909 1.0e-231 807.4 843 58.1
Rhsim12G0008000 Rhododendron simsii HOM05D005394 ORTHO05D006909 5.7e-230 801.6 834 57.6
Cpa.g.sc2.203 Carica papaya HOM05D005394 ORTHO05D006909 6.2e-200 701.8 430 81.6
Oeu033979.1 Olea europaea HOM05D005394 ORTHO05D006909 1.6e-168 597.4 477 67.1
Actinidia12539 Actinidia chinensis HOM05D005394 ORTHO05D006909 1.8e-162 577.4 441 70.1
Atru.chr6.2063 Acer truncatum HOM05D005394 ORTHO05D006909 3.5e-142 510.0 322 80.1
Cre17.g721900 Chlamydomonas reinhardtii HOM05D005394 ORTHO05D006909 3.8e-133 479.9 762 37.5
CDE09G0652 Ceratophyllum demersum HOM05D005394 ORTHO05D006909 4.1e-127 459.9 313 72.2
PRCOL_00001583 Prasinoderma coloniale HOM05D005394 ORTHO05D006909 2.9e-125 453.8 795 35.6
MBI10_g36389_MAGBIO Magnolia biondii HOM05D005394 ORTHO05D006909 2.2e-120 437.6 265 80.8
MBI10_g36386_MAGBIO Magnolia biondii HOM05D005394 ORTHO05D006909 2.3e-117 427.6 391 60.4
Cpa.g.sc2.200 Carica papaya HOM05D005394 ORTHO05D006909 6.8e-114 416.0 374 67.1
MCO08G047 Micromonas commoda HOM05D005394 ORTHO05D006909 9.5e-100 369.0 879 30.9
Actinidia12538 Actinidia chinensis HOM05D005394 ORTHO05D006909 1.2e-86 325.5 279 66.3
CSS0027861 Camellia sinensis var. sinensis HOM05D005394 ORTHO05D006909 2.5e-76 291.2 392 50.5
Haze_13526 Corylus avellana HOM05D005394 ORTHO05D006909 1.7e-64 251.9 225 63.6
BcaB01g03482 Brassica carinata HOM05D005394 ORTHO05D006909 1.2e-49 202.6 131 73.3
DCAR_032393 Daucus carota HOM05D005394 ORTHO05D011132 5.9e-49 200.3 180 59.4
HanXRQChr14g0428721 Helianthus annuus HOM05D005394 ORTHO05D006909 4.1e-42 177.6 125 70.4
CSS0006481 Camellia sinensis var. sinensis HOM05D005394 ORTHO05D006909 1.5e-41 175.6 142 68.3
CSS0047075 Camellia sinensis var. sinensis HOM05D005394 ORTHO05D006909 3.9e-37 161.0 151 58.9
CSS0003150 Camellia sinensis var. sinensis HOM05D005394 ORTHO05D006909 8.8e-37 159.8 151 57.6
unitig_748.g8066 Utricularia gibba HOM05D005394 ORTHO05D006909 9.1e-34 149.8 121 69.4
CSS0027532 Camellia sinensis var. sinensis HOM05D005394 ORTHO05D006909 3.5e-33 147.9 160 54.4
BcaB01g03481 Brassica carinata HOM05D005394 ORTHO05D006909 3.1e-18 98.2 70 70.0
Actinidia12535 Actinidia chinensis HOM05D005394 ORTHO05D055987 7.0e-10 70.5 130 41.5


User provided reference genes

Program Settings