Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_06263_v3 Cicer arietinum L. HOM05D004564 ORTHO05D006106 0.0e+00 1849.7 962 100.0
Medtr5g091020 Medicago truncatula HOM05D004564 ORTHO05D006106 0.0e+00 1598.2 962 87.1
TPR.G10155 Trifolium pratense HOM05D004564 ORTHO05D006106 0.0e+00 1580.1 962 84.9
Glyma.14G030500 Glycine max HOM05D004564 ORTHO05D006106 0.0e+00 1570.1 962 85.7
arahy.Tifrunner.gnm1.ann1.PNUX2Z Arachis hypogaea HOM05D004564 ORTHO05D006106 0.0e+00 1568.1 961 84.9
arahy.Tifrunner.gnm1.ann1.THQ3DC Arachis hypogaea HOM05D004564 ORTHO05D006106 0.0e+00 1562.7 957 85.0
LjContig00049g0003012 Lotus japonicus HOM05D004564 ORTHO05D006106 0.0e+00 1547.7 973 82.1
VMungo0647G1349 Vigna mungo HOM05D004564 ORTHO05D006106 0.0e+00 1538.5 958 83.7
Phvul.008G194400 Phaseolus vulgaris HOM05D004564 ORTHO05D006106 0.0e+00 1531.2 960 83.4
Lj1g0025808 Lotus japonicus HOM05D004564 ORTHO05D006106 0.0e+00 1477.2 973 79.0
Prupe.3G177800 Prunus persica HOM05D004564 ORTHO05D006106 0.0e+00 1342.8 963 73.6
CiPaw.04G137200 Carya illinoinensis HOM05D004564 ORTHO05D006106 0.0e+00 1333.9 961 71.9
CANSAT25G1027 Cannabis sativa HOM05D004564 ORTHO05D006106 0.0e+00 1321.2 961 71.8
QL08p045017 Quercus lobata HOM05D004564 ORTHO05D006106 0.0e+00 1311.2 1036 67.2
Thecc.01G168400 Theobroma cacao HOM05D004564 ORTHO05D006106 0.0e+00 1311.2 960 72.0
MD09G1148300 Malus domestica HOM05D004564 ORTHO05D006106 0.0e+00 1310.4 963 72.1
TWI59G1136 Tripterygium wilfordii HOM05D004564 ORTHO05D006106 0.0e+00 1301.6 962 69.8
CsaV3_4G007910 Cucumis sativus L. HOM05D004564 ORTHO05D006106 0.0e+00 1293.5 961 69.6
Gorai.007G175000 Gossypium raimondii HOM05D004564 ORTHO05D006106 0.0e+00 1293.1 959 71.0
RcHm_v2.0_Chr2g0152251 Rosa chinensis HOM05D004564 ORTHO05D006106 0.0e+00 1290.4 963 69.4
CSS0004840 Camellia sinensis var. sinensis HOM05D004564 ORTHO05D006106 0.0e+00 1287.3 950 70.1
GSVIVG01020836001 Vitis vinifera HOM05D004564 ORTHO05D006106 0.0e+00 1286.6 966 69.2
Gohir.D11G164200 Gossypium hirsutum HOM05D004564 ORTHO05D006106 0.0e+00 1273.5 959 70.3
FvH4_6g38720 Fragaria vesca HOM05D004564 ORTHO05D006106 0.0e+00 1271.9 963 68.6
Gohir.A11G157200 Gossypium hirsutum HOM05D004564 ORTHO05D006106 0.0e+00 1271.5 959 70.1
FAN09G3866 Fragaria x ananassa HOM05D004564 ORTHO05D006106 0.0e+00 1260.4 977 67.3
Actinidia32511 Actinidia chinensis HOM05D004564 ORTHO05D006106 0.0e+00 1260.0 961 68.7
TAR369G0268 Trochodendron aralioides HOM05D004564 ORTHO05D006106 0.0e+00 1258.8 960 70.1
Potri.004G081200 Populus trichocarpa HOM05D004564 ORTHO05D006106 0.0e+00 1255.7 952 68.6
FAN14G4455 Fragaria x ananassa HOM05D004564 ORTHO05D006106 0.0e+00 1250.7 977 67.3
Manes.01G123700 Manihot esculenta HOM05D004564 ORTHO05D006106 0.0e+00 1231.1 952 67.5
Sabra04G0053900 Salix brachista HOM05D004564 ORTHO05D006106 0.0e+00 1229.5 971 66.4
FAN05G0785 Fragaria x ananassa HOM05D004564 ORTHO05D006106 0.0e+00 1228.0 1088 61.0
Haze_13558 Corylus avellana HOM05D004564 ORTHO05D006106 0.0e+00 1224.2 1117 60.6
Duzib133G1099 Durio zibethinus HOM05D004564 ORTHO05D006106 0.0e+00 1224.2 957 68.3
Dinv03683 Davidia involucrata HOM05D004564 ORTHO05D006106 0.0e+00 1222.6 887 71.0
PGR042G1847 Punica granatum HOM05D004564 ORTHO05D006106 0.0e+00 1211.4 952 66.0
COL.COLO4_38399 Corchorus olitorius HOM05D004564 ORTHO05D006106 0.0e+00 1202.6 979 65.9
ClCG07G010420 Citrullus lanatus HOM05D004564 ORTHO05D006106 0.0e+00 1191.8 912 68.0
Cc05_g01430 Coffea canephora HOM05D004564 ORTHO05D006106 0.0e+00 1174.8 958 63.2
Cpa.g.sc119.28 Carica papaya HOM05D004564 ORTHO05D006106 0.0e+00 1173.7 973 65.0
DCAR_016941 Daucus carota HOM05D004564 ORTHO05D006106 0.0e+00 1167.9 953 64.0
THA.LOC104800817 Tarenaya hassleriana HOM05D004564 ORTHO05D006106 0.0e+00 1166.4 952 64.9
MSTRG.6616 Avicennia marina HOM05D004564 ORTHO05D006106 0.0e+00 1162.9 962 62.4
BraA10t42789Z Brassica rapa HOM05D004564 ORTHO05D006106 0.0e+00 1159.1 959 64.2
PSO170G0418 Papaver somniferum HOM05D004564 ORTHO05D006106 0.0e+00 1158.3 949 63.9
A10p05220 Brassica napus HOM05D004564 ORTHO05D006106 0.0e+00 1156.4 953 64.4
Sopen08g021130 Solanum pennellii HOM05D004564 ORTHO05D006106 0.0e+00 1156.0 951 62.6
BcaB02g06779 Brassica carinata HOM05D004564 ORTHO05D006106 0.0e+00 1155.6 957 64.3
Nn7g37923 Nelumbo nucifera HOM05D004564 ORTHO05D006106 0.0e+00 1154.8 913 65.7
PSO782G0424 Papaver somniferum HOM05D004564 ORTHO05D006106 0.0e+00 1153.3 949 63.2
C05p04820 Brassica napus HOM05D004564 ORTHO05D006106 0.0e+00 1151.3 959 64.1
Aa31LG1G7670 Aethionema arabicum HOM05D004564 ORTHO05D006106 0.0e+00 1150.2 953 63.8
Migut.M00072 Erythranthe guttata HOM05D004564 ORTHO05D006106 0.0e+00 1148.3 961 63.9
BolC5t29255H Brassica oleracea HOM05D004564 ORTHO05D006106 0.0e+00 1142.5 959 63.6
Sp1g05350 Schrenkiella parvula HOM05D004564 ORTHO05D006106 0.0e+00 1141.7 957 63.8
SalBow7G3717 Salvia bowleyana HOM05D004564 ORTHO05D006106 0.0e+00 1139.8 962 61.3
AL1G16620 Arabidopsis lyrata HOM05D004564 ORTHO05D006106 0.0e+00 1137.1 955 64.1
AT1G06590 Arabidopsis thaliana HOM05D004564 ORTHO05D006106 0.0e+00 1129.4 955 63.5
Solyc08g067190.4 Solanum lycopersicum HOM05D004564 ORTHO05D006106 0.0e+00 1126.7 1001 59.4
Carub.0001s0595 Capsella rubella HOM05D004564 ORTHO05D006106 0.0e+00 1124.4 955 63.1
Lsat_1_v5_gn_9_29980 Lactuca sativa HOM05D004564 ORTHO05D006106 0.0e+00 1116.7 961 61.8
Thhalv10006743m.g Eutrema salsugineum HOM05D004564 ORTHO05D006106 0.0e+00 1102.4 953 62.4
A09p66910 Brassica napus HOM05D004564 ORTHO05D006106 0.0e+00 1098.2 953 62.3
HanXRQChr10g0292821 Helianthus annuus HOM05D004564 ORTHO05D006106 0.0e+00 1097.4 948 61.4
CAN.G348.3 Capsicum annuum HOM05D004564 ORTHO05D006106 0.0e+00 1096.3 910 62.6
SGA_v2.0_scaffold181G39711 Striga asiatica HOM05D004564 ORTHO05D006106 0.0e+00 1095.9 1023 58.7
ECA247G1853 Erigeron canadensis HOM05D004564 ORTHO05D006106 0.0e+00 1091.3 950 60.7
BraA09t42026Z Brassica rapa HOM05D004564 ORTHO05D006106 0.0e+00 1084.7 981 60.7
Ciclev10030760m.g Citrus clementina HOM05D004564 ORTHO05D006106 0.0e+00 1081.2 811 69.8
EL10Ac1g01740 Beta vulgaris HOM05D004564 ORTHO05D006106 0.0e+00 1078.5 958 59.0
Rhsim12G0010800 Rhododendron simsii HOM05D004564 ORTHO05D006106 0.0e+00 1075.5 950 61.1
Cfa023356 Carpinus fangiana HOM05D004564 ORTHO05D006106 5.2e-307 1057.7 969 61.8
Aqoxy1G01488 Aquilegia oxysepala HOM05D004564 ORTHO05D006106 3.3e-306 1055.0 957 61.5
Sed0025117 Sechium edule HOM05D004564 ORTHO05D006106 4.1e-304 1048.1 800 68.2
C08p51140 Brassica napus HOM05D004564 ORTHO05D006106 1.6e-303 1046.2 958 59.7
BolC8t52640H Brassica oleracea HOM05D004564 ORTHO05D006106 3.2e-301 1038.5 975 58.6
Nitab4.5_0004346g0010 Nicotiana tabacum HOM05D004564 ORTHO05D006106 6.1e-300 1034.2 911 59.9
Sc06g0007580 Simmondsia chinensis HOM05D004564 ORTHO05D006106 3.1e-296 1021.9 953 57.6
AUR62022316 Chenopodium quinoa HOM05D004564 ORTHO05D006106 2.6e-290 1002.3 958 55.9
AUR62034940 Chenopodium quinoa HOM05D004564 ORTHO05D006106 7.7e-287 990.7 906 57.8
Hund26665 Selenicereus undatus HOM05D004564 ORTHO05D006106 6.1e-284 981.1 1058 52.5
Nitab4.5_0000508g0020 Nicotiana tabacum HOM05D004564 ORTHO05D006106 1.4e-283 979.9 961 56.5
Oeu022916.1 Olea europaea HOM05D004564 ORTHO05D006106 1.3e-281 973.4 1199 47.5
Lalb_Chr10g0106571 Lupinus albus HOM05D004564 ORTHO05D006106 1.3e-278 963.4 609 80.0
Ah.05g168440 Amaranthus hybridus HOM05D004564 ORTHO05D006106 4.7e-276 954.9 949 55.8
Eucgr.A02026 Eucalyptus grandis HOM05D004564 ORTHO05D006106 6.1e-276 954.5 775 67.5
Lj1A591G26 Lonicera japonica HOM05D004564 ORTHO05D006106 1.2e-271 940.3 755 65.8
unitig_37.g12587 Utricularia gibba HOM05D004564 ORTHO05D006106 3.1e-267 925.6 985 51.7
Peaxi162Scf00922g00319 Petunia axillaris HOM05D004564 ORTHO05D006106 5.8e-266 921.4 773 62.4
Os12g0626300 Oryza sativa ssp. japonica HOM05D004564 ORTHO05D006106 2.8e-260 902.5 956 52.8
Atru.chr6.2044 Acer truncatum HOM05D004564 ORTHO05D006106 8.1e-260 901.0 680 72.5
MELO3C016147.2 Cucumis melo HOM05D004564 ORTHO05D006106 3.4e-258 895.6 682 67.7
SalBow1G3587 Salvia bowleyana HOM05D004564 ORTHO05D006106 1.2e-255 887.1 763 61.1
QL93p2016_0008 Quercus lobata HOM05D004564 ORTHO05D006106 8.1e-252 874.4 639 70.9
Psat2g017160 Pisum sativum HOM05D004564 ORTHO05D006106 1.7e-249 866.7 525 84.2
Zm00001eb128180 Zea mays HOM05D004564 ORTHO05D006106 2.3e-246 856.3 956 50.8
CARHR006200 Cardamine hirsuta HOM05D004564 ORTHO05D006106 2.9e-217 759.6 563 71.8
Psat2g017120 Pisum sativum HOM05D004564 ORTHO05D006106 6.7e-214 748.4 432 89.6
vmacro08736 Vaccinium macrocarpon HOM05D004564 ORTHO05D006106 1.2e-207 727.6 529 71.5
ATR0763G133 Amborella trichopoda HOM05D004564 ORTHO05D006106 4.8e-172 609.4 512 64.1
BcaNung07074 Brassica carinata HOM05D004564 ORTHO05D006106 9.1e-171 605.1 434 74.2
Pp3c3_33140 Physcomitrium patens HOM05D004564 ORTHO05D006106 2.3e-161 573.9 962 39.3
MBI18_g13604_MAGBIO Magnolia biondii HOM05D004564 ORTHO05D006106 8.9e-158 562.0 948 41.1
FAN02G2671 Fragaria x ananassa HOM05D004564 ORTHO05D006106 2.4e-155 553.9 473 63.0
arahy.Tifrunner.gnm1.ann1.UKG9X7 Arachis hypogaea HOM05D004564 ORTHO05D006106 1.4e-150 538.1 349 76.8
Hma1.2p1_0539F.1_g174590 Hydrangea macrophylla HOM05D004564 ORTHO05D006106 3.6e-143 513.5 451 61.0
AagrBONN_evm.TU.Sc2ySwM_228.5505 Anthoceros agrestis HOM05D004564 ORTHO05D006106 1.0e-137 495.4 952 35.3
SHI30099 Sapria himalayana HOM05D004564 ORTHO05D006106 4.3e-136 490.0 703 43.8
Lalb_Chr10g0106581 Lupinus albus HOM05D004564 ORTHO05D006106 2.4e-134 484.2 305 85.2
SMO174G0184 Selaginella moellendorffii HOM05D004564 ORTHO05D006106 1.1e-131 475.3 944 35.4
vmacro08737 Vaccinium macrocarpon HOM05D004564 ORTHO05D006106 1.7e-121 441.4 673 41.8
Mapoly0007s0190 Marchantia polymorpha HOM05D004564 ORTHO05D006106 1.6e-119 434.9 965 32.7
HPP92_001899 Vanilla planifolia HOM05D004564 ORTHO05D006106 2.8e-95 354.4 728 36.0
CBR_g44342 Chara braunii HOM05D000019 ORTHO05D000353 1.1e-94 352.4 567 39.7
GSVIVG01013077001 Vitis vinifera HOM05D004564 ORTHO05D006106 4.5e-93 347.1 246 75.2
Glyma.02G284500 Glycine max HOM05D004564 ORTHO05D006106 1.5e-88 332.0 221 84.2
CAN.G3149.1 Capsicum annuum HOM05D004564 ORTHO05D006106 5.9e-85 320.1 228 70.6
SEGI_14916 Sequoiadendron giganteum HOM05D004564 ORTHO05D006106 7.9e-82 309.7 280 58.2
MD17G1134700 Malus domestica HOM05D004564 ORTHO05D006106 4.7e-74 283.9 283 58.0
HPP92_001867 Vanilla planifolia HOM05D004564 ORTHO05D006106 1.8e-73 282.0 602 35.7
arahy.Tifrunner.gnm1.ann1.RHC2N4 Arachis hypogaea HOM05D000056 ORTHO05D006106 3.3e-64 251.1 157 78.3
MD17G1134600 Malus domestica HOM05D004564 ORTHO05D006106 9.1e-62 243.0 260 50.0
TAR626G0359 Trochodendron aralioides HOM05D004564 ORTHO05D006106 8.8e-57 226.5 152 75.0
Phvul.001G172501 Phaseolus vulgaris HOM05D004564 ORTHO05D006106 2.9e-52 211.5 132 79.5
Lj5g0002046 Lotus japonicus HOM05D004564 ORTHO05D000491 1.4e-49 202.6 181 59.7
CDE02G3007 Ceratophyllum demersum HOM05D004564 ORTHO05D006106 5.9e-45 187.2 152 61.2
Peaxi162Scf00922g00318 Petunia axillaris HOM05D004564 ORTHO05D006106 6.1e-42 177.2 124 68.5
BcaNung07000 Brassica carinata HOM05D004564 ORTHO05D006106 7.0e-38 163.7 118 66.9
Lj5g0014248 Lotus japonicus HOM05D004564 ORTHO05D006106 1.9e-35 155.6 155 57.4
TAR626G0994 Trochodendron aralioides HOM05D004564 ORTHO05D006106 1.5e-32 146.0 103 65.0
ATR0763G243 Amborella trichopoda HOM05D004564 ORTHO05D006106 6.4e-31 140.6 187 42.8
SHI30097 Sapria himalayana HOM05D004564 ORTHO05D006106 1.9e-30 139.0 270 36.7
TPR.G10922 Trifolium pratense HOM05D004564 ORTHO05D006106 7.8e-29 133.7 84 86.9
Rhsim02G0232100 Rhododendron simsii HOM05D000252 ORTHO05D000307 2.1e-26 125.6 145 55.2
ATR0763G128 Amborella trichopoda HOM05D004564 ORTHO05D006106 1.5e-24 119.4 78 66.7
ATR0820G167 Amborella trichopoda HOM05D004564 ORTHO05D006106 1.7e-23 115.9 120 51.7
Rhsim12G0011200 Rhododendron simsii HOM05D004564 ORTHO05D000827 4.6e-21 107.8 100 64.0
ATR0598G245 Amborella trichopoda HOM05D004564 ORTHO05D006106 1.0e-20 106.7 105 55.2
Lalb_Chr10g0106561 Lupinus albus HOM05D004564 ORTHO05D006106 4.3e-19 101.3 58 82.8
TPR.G35705 Trifolium pratense HOM05D023930 ORTHO05D018030 3.5e-13 81.6 204 33.3
Rhsim12G0011100 Rhododendron simsii HOM05D004564 ORTHO05D006106 6.0e-13 80.9 69 55.1
TPR.G7402 Trifolium pratense HOM05D023930 ORTHO05D006106 6.0e-13 80.9 204 32.8
Rhsim12G0011600 Rhododendron simsii HOM05D004564 ORTHO05D000827 1.7e-12 79.3 66 68.2
Rhsim12G0011500 Rhododendron simsii HOM05D004564 ORTHO05D006106 8.7e-12 77.0 67 55.2
TPR.G8869 Trifolium pratense HOM05D020190 ORTHO05D018030 1.6e-10 72.8 74 51.4
Zm00001eb370760 Zea mays HOM05D004564 ORTHO05D006106 2.1e-10 72.4 65 56.9
SEGI_30840 Sequoiadendron giganteum HOM05D004564 ORTHO05D006106 5.3e-09 67.8 113 37.2
SHI30098 Sapria himalayana HOM05D004564 ORTHO05D006106 6.9e-09 67.4 257 25.7
TPR.G18659 Trifolium pratense HOM05D020190 ORTHO05D018030 1.5e-08 66.2 72 48.6
MCO11G813 Micromonas commoda HOM05D004564 ORTHO05D006106 2.6e-08 65.5 478 22.4
TPR.G10878 Trifolium pratense HOM05D020190 ORTHO05D018030 9.9e-08 63.5 75 46.7
TPR.G31053 Trifolium pratense HOM05D033735 ORTHO05D410983 1.3e-07 63.2 245 24.9


User provided reference genes

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