Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_06262_v3 Cicer arietinum L. HOM05D004710 ORTHO05D005445 3.3e-262 907.9 485 100.0
Medtr5g091000 Medicago truncatula HOM05D004710 ORTHO05D005445 2.2e-245 852.0 493 92.7
TPR.G10151 Trifolium pratense HOM05D004710 ORTHO05D005445 5.0e-242 840.9 493 91.3
Glyma.02G284400 Glycine max HOM05D004710 ORTHO05D005445 1.4e-239 832.8 492 90.9
Glyma.14G030600 Glycine max HOM05D004710 ORTHO05D005445 1.2e-238 829.7 492 90.7
Psat2g017280 Pisum sativum HOM05D004710 ORTHO05D005445 2.2e-237 825.5 489 90.6
Phvul.008G194500 Phaseolus vulgaris HOM05D004710 ORTHO05D005445 8.2e-237 823.5 492 90.2
arahy.Tifrunner.gnm1.ann1.3YJ1U6 Arachis hypogaea HOM05D004710 ORTHO05D005445 1.8e-228 795.8 491 87.6
VMungo0647G1334 Vigna mungo HOM05D004710 ORTHO05D005445 2.4e-228 795.4 479 89.8
arahy.Tifrunner.gnm1.ann1.BVM079 Arachis hypogaea HOM05D004710 ORTHO05D005445 4.5e-227 791.2 491 87.2
Lalb_Chr10g0106551 Lupinus albus HOM05D004710 ORTHO05D005445 6.1e-224 780.8 490 86.1
LjContig00049g0017244 Lotus japonicus HOM05D004710 ORTHO05D005445 2.8e-221 771.9 492 86.0
Lalb_Chr04g0248931 Lupinus albus HOM05D004710 ORTHO05D005445 7.3e-217 757.3 490 84.7
QL08p045042 Quercus lobata HOM05D004710 ORTHO05D005445 3.1e-207 725.3 491 80.0
QL93p2016_0028 Quercus lobata HOM05D004710 ORTHO05D005445 3.1e-207 725.3 491 80.0
Cfa023545 Carpinus fangiana HOM05D004710 ORTHO05D005445 5.8e-206 721.1 498 79.5
GSVIVG01020835001 Vitis vinifera HOM05D004710 ORTHO05D005445 4.1e-204 714.9 497 79.1
COL.COLO4_38396 Corchorus olitorius HOM05D004710 ORTHO05D005445 1.0e-202 710.3 499 78.6
Ciclev10031314m.g Citrus clementina HOM05D004710 ORTHO05D005445 3.9e-202 708.4 493 79.7
Thecc.01G168300 Theobroma cacao HOM05D004710 ORTHO05D005445 9.5e-201 703.7 490 79.0
CANSAT64G1857 Cannabis sativa HOM05D004710 ORTHO05D005445 2.3e-199 699.1 499 77.6
Prupe.3G177900 Prunus persica HOM05D004710 ORTHO05D005445 4.0e-199 698.4 494 78.5
Lj6g0021308 Lotus japonicus HOM05D004710 ORTHO05D005445 5.2e-199 698.0 488 79.9
Potri.005G205300 Populus trichocarpa HOM05D004710 ORTHO05D005445 1.2e-198 696.8 494 77.5
CiPaw.04G137800 Carya illinoinensis HOM05D004710 ORTHO05D005445 1.5e-198 696.4 500 76.6
Lj6g0000252 Lotus japonicus HOM05D004710 ORTHO05D005445 2.6e-198 695.7 475 81.3
Potri.002G057300 Populus trichocarpa HOM05D004710 ORTHO05D005445 7.5e-198 694.1 499 76.6
FvH4_6g38730 Fragaria vesca HOM05D004710 ORTHO05D005445 2.2e-197 692.6 497 75.3
Atru.chr6.2043 Acer truncatum HOM05D004710 ORTHO05D005445 6.4e-197 691.0 493 76.7
PGR042G2540 Punica granatum HOM05D004710 ORTHO05D005445 2.4e-196 689.1 494 77.3
Gohir.D08G061300 Gossypium hirsutum HOM05D004710 ORTHO05D005445 4.1e-196 688.3 490 77.8
MD17G1134500 Malus domestica HOM05D004710 ORTHO05D005445 4.1e-196 688.3 495 77.6
Gohir.A08G051500 Gossypium hirsutum HOM05D004710 ORTHO05D005445 1.2e-195 686.8 490 77.6
Cc05_g01390 Coffea canephora HOM05D004710 ORTHO05D005445 4.6e-195 684.9 497 75.3
TWI59G0681 Tripterygium wilfordii HOM05D004710 ORTHO05D005445 6.0e-195 684.5 495 75.4
Gorai.004G063400 Gossypium raimondii HOM05D004710 ORTHO05D005445 1.0e-194 683.7 490 77.3
Duzib133G0803 Durio zibethinus HOM05D004710 ORTHO05D005445 3.9e-194 681.8 490 76.7
FAN05G2509 Fragaria x ananassa HOM05D004710 ORTHO05D005445 3.9e-194 681.8 517 72.7
Duzib211G0680 Durio zibethinus HOM05D004710 ORTHO05D005445 1.2e-192 676.8 480 77.7
Cpa.g.sc50.115 Carica papaya HOM05D004710 ORTHO05D005445 1.6e-192 676.4 493 75.3
FAN02G0505 Fragaria x ananassa HOM05D004710 ORTHO05D005445 2.8e-192 675.6 527 71.0
MD09G1148200 Malus domestica HOM05D004710 ORTHO05D005445 2.8e-192 675.6 465 79.1
CSS0019642 Camellia sinensis var. sinensis HOM05D004710 ORTHO05D005445 4.0e-191 671.8 497 75.5
Gorai.001G211100 Gossypium raimondii HOM05D004710 ORTHO05D005445 6.8e-191 671.0 489 75.5
Eucgr.A02027 Eucalyptus grandis HOM05D004710 ORTHO05D005445 8.9e-191 670.6 497 74.0
Gohir.A07G182700 Gossypium hirsutum HOM05D004710 ORTHO05D005445 2.6e-190 669.1 490 76.1
FAN14G4495 Fragaria x ananassa HOM05D004710 ORTHO05D005445 3.4e-190 668.7 506 72.7
Rhsim12G0010700 Rhododendron simsii HOM05D004710 ORTHO05D005445 1.7e-189 666.4 499 74.7
vmacro08738 Vaccinium macrocarpon HOM05D004710 ORTHO05D005445 1.6e-187 659.8 499 73.9
RcHm_v2.0_Chr2g0152261 Rosa chinensis HOM05D004710 ORTHO05D005445 4.6e-187 658.3 498 73.3
Sabra05G0156000 Salix brachista HOM05D004710 ORTHO05D005445 1.0e-186 657.1 515 74.0
ClCG07G010740 Citrullus lanatus HOM05D004710 ORTHO05D005445 1.3e-186 656.8 497 73.4
CsaV3_4G007580 Cucumis sativus L. HOM05D004710 ORTHO05D005445 3.0e-186 655.6 497 73.4
Sopen05g017300 Solanum pennellii HOM05D004710 ORTHO05D005445 8.6e-186 654.1 498 74.1
MSTRG.14902 Avicennia marina HOM05D004710 ORTHO05D005445 3.3e-185 652.1 492 71.7
MELO3C016183.2 Cucumis melo HOM05D004710 ORTHO05D005445 5.6e-185 651.4 492 73.2
Nn7g38035 Nelumbo nucifera HOM05D004710 ORTHO05D005445 4.0e-183 645.2 495 71.7
Sed0010176 Sechium edule HOM05D004710 ORTHO05D005445 4.0e-183 645.2 497 72.6
Hma1.2p1_0073F.1_g038510 Hydrangea macrophylla HOM05D004710 ORTHO05D005445 1.5e-182 643.3 496 73.8
Sabra02G0046700 Salix brachista HOM05D004710 ORTHO05D005445 1.5e-182 643.3 488 74.2
TAR624G0695 Trochodendron aralioides HOM05D004710 ORTHO05D005445 1.5e-182 643.3 496 72.6
THA.LOC104800818 Tarenaya hassleriana HOM05D004710 ORTHO05D005445 9.9e-182 640.6 502 70.7
Aqoxy4G00042 Aquilegia oxysepala HOM05D004710 ORTHO05D005445 3.8e-181 638.6 494 70.2
SGA_v2.0_scaffold73G24477 Striga asiatica HOM05D004710 ORTHO05D005445 8.4e-181 637.5 492 71.5
AT2G30880 Arabidopsis thaliana HOM05D004710 ORTHO05D005445 9.3e-180 634.0 501 71.7
Actinidia11220 Actinidia chinensis HOM05D004710 ORTHO05D005445 6.0e-179 631.3 485 72.6
TAR625G1186 Trochodendron aralioides HOM05D004710 ORTHO05D005445 1.7e-178 629.8 496 71.4
CARHR124360 Cardamine hirsuta HOM05D004710 ORTHO05D005445 2.3e-178 629.4 501 70.5
Sed0002024 Sechium edule HOM05D004710 ORTHO05D005445 3.0e-178 629.0 498 71.5
BcaB06g28390 Brassica carinata HOM05D004710 ORTHO05D005445 5.1e-178 628.2 504 70.4
Sp4g13350 Schrenkiella parvula HOM05D004710 ORTHO05D005445 5.1e-178 628.2 500 71.0
A04p23580 Brassica napus HOM05D004710 ORTHO05D005445 1.9e-177 626.3 500 70.0
Carub.0004s1208 Capsella rubella HOM05D004710 ORTHO05D005445 1.9e-177 626.3 502 70.5
Gohir.D07G189500 Gossypium hirsutum HOM05D004710 ORTHO05D005445 3.3e-177 625.5 464 74.4
Thhalv10016548m.g Eutrema salsugineum HOM05D004710 ORTHO05D005445 4.3e-177 625.2 500 71.0
Peaxi162Scf00416g00116 Petunia axillaris HOM05D004710 ORTHO05D005445 5.6e-177 624.8 492 73.6
AL4G25830 Arabidopsis lyrata HOM05D004710 ORTHO05D005445 9.6e-177 624.0 501 70.3
EL10Ac9g22830 Beta vulgaris HOM05D004710 ORTHO05D005445 2.1e-176 622.9 509 67.8
Aa31LG5G6040 Aethionema arabicum HOM05D004710 ORTHO05D005445 4.0e-175 618.6 509 69.4
Migut.M00073 Erythranthe guttata HOM05D004710 ORTHO05D005445 9.0e-175 617.5 498 69.7
Sc15g0002190 Simmondsia chinensis HOM05D004710 ORTHO05D005445 5.8e-174 614.8 491 68.8
Hund08425 Selenicereus undatus HOM05D004710 ORTHO05D005445 9.9e-174 614.0 485 69.7
BcaB06g28457 Brassica carinata HOM05D004710 ORTHO05D005445 4.9e-173 611.7 498 68.9
Eucgr.K01227 Eucalyptus grandis HOM05D004710 ORTHO05D005445 1.6e-171 606.7 481 70.5
Manes.01G130800 Manihot esculenta HOM05D004710 ORTHO05D005445 2.1e-171 606.3 442 75.1
BolC4t27504H Brassica oleracea HOM05D004710 ORTHO05D005445 6.0e-171 604.7 498 68.3
BraA04t17884Z Brassica rapa HOM05D004710 ORTHO05D005445 1.0e-170 604.0 500 68.2
ECA246G2799 Erigeron canadensis HOM05D004710 ORTHO05D005445 6.7e-170 601.3 510 66.3
DCAR_013324 Daucus carota HOM05D004710 ORTHO05D005445 1.9e-169 599.7 492 69.5
C04p60020 Brassica napus HOM05D004710 ORTHO05D005445 2.5e-169 599.4 495 68.1
HanXRQChr17g0541191 Helianthus annuus HOM05D004710 ORTHO05D005445 4.3e-169 598.6 494 68.0
FAN09G1050 Fragaria x ananassa HOM05D004710 ORTHO05D005445 7.4e-169 597.8 519 66.1
HanXRQChr06g0171641 Helianthus annuus HOM05D004710 ORTHO05D005445 2.4e-167 592.8 493 67.3
Actinidia06121 Actinidia chinensis HOM05D004710 ORTHO05D005445 7.6e-166 587.8 409 79.5
Zm00001eb065510 Zea mays HOM05D004710 ORTHO05D005445 1.4e-164 583.6 498 64.3
ATR0763G198 Amborella trichopoda HOM05D004710 ORTHO05D005445 4.2e-164 582.0 495 65.7
PSO675G4395 Papaver somniferum HOM05D004710 ORTHO05D005445 7.1e-164 581.3 499 66.5
PSO675G5558 Papaver somniferum HOM05D004710 ORTHO05D005445 1.0e-162 577.4 500 66.2
Os03g0666200 Oryza sativa ssp. japonica HOM05D004710 ORTHO05D005445 1.8e-162 576.6 494 64.2
Solyc05g021100.2 Solanum lycopersicum HOM05D004710 ORTHO05D005445 5.6e-161 571.6 443 73.6
Lsat_1_v5_gn_3_35160 Lactuca sativa HOM05D004710 ORTHO05D005445 9.6e-161 570.9 498 64.9
HPP92_018652 Vanilla planifolia HOM05D004710 ORTHO05D005445 7.1e-156 554.7 492 63.4
Nitab4.5_0003177g0030 Nicotiana tabacum HOM05D004710 ORTHO05D005445 2.8e-152 542.7 375 79.2
Lj1C589T0 Lonicera japonica HOM05D004710 ORTHO05D005445 5.5e-148 528.5 534 60.9
Gohir.1Z049561 Gossypium hirsutum HOM05D004710 ORTHO05D005445 1.9e-145 520.0 356 79.5
AUR62015127 Chenopodium quinoa HOM05D004710 ORTHO05D005445 2.6e-142 509.6 477 62.3
Ah.01g013580 Amaranthus hybridus HOM05D004710 ORTHO05D005445 1.6e-139 500.4 475 60.2
Zm00001eb117740 Zea mays HOM05D004710 ORTHO05D005445 3.0e-138 496.1 470 58.3
BcaB01g04076 Brassica carinata HOM05D004710 ORTHO05D005445 3.4e-134 482.6 492 59.8
PGR142G3117 Punica granatum HOM05D004710 ORTHO05D005445 7.7e-134 481.5 486 57.4
SGA_v2.0_scaffold181G39713 Striga asiatica HOM05D004710 ORTHO05D005445 1.8e-130 470.3 487 59.3
MBI18_g07571_MAGBIO Magnolia biondii HOM05D004710 ORTHO05D005445 1.6e-123 447.2 455 59.8
CAN.G237.1 Capsicum annuum HOM05D004710 ORTHO05D005445 8.8e-122 441.4 376 70.2
Nitab4.5_0000019g0200 Nicotiana tabacum HOM05D004710 ORTHO05D005445 1.3e-120 437.6 388 67.8
Zm00001eb217790 Zea mays HOM05D004710 ORTHO05D005445 1.7e-120 437.2 405 61.0
SEGI_28206 Sequoiadendron giganteum HOM05D004710 ORTHO05D005445 6.3e-120 435.3 378 62.4
BcaC01g06018 Brassica carinata HOM05D004710 ORTHO05D005445 3.5e-110 402.9 483 55.3
C03p20350 Brassica napus HOM05D004710 ORTHO05D005445 6.6e-101 372.1 380 61.1
BolC3t14413H Brassica oleracea HOM05D004710 ORTHO05D005445 6.6e-101 372.1 380 61.1
Dinv09874 Davidia involucrata HOM05D004710 ORTHO05D005445 2.9e-96 356.7 195 90.3
Mapoly0039s0099 Marchantia polymorpha HOM05D004710 ORTHO05D005445 1.5e-89 334.3 363 53.2
Haze_13560 Corylus avellana HOM05D004710 ORTHO05D005445 2.0e-89 334.0 253 76.7
Oeu040170.3 Olea europaea HOM05D004710 ORTHO05D005445 4.6e-86 322.8 425 49.2
Pp3c23_16670 Physcomitrium patens HOM05D004710 ORTHO05D005445 8.1e-83 312.0 434 45.4
SMO169G0289 Selaginella moellendorffii HOM05D004710 ORTHO05D005445 2.3e-82 310.5 317 52.7
FAN06G4649 Fragaria x ananassa HOM05D004710 ORTHO05D005445 2.2e-80 303.9 215 76.3
Aa31LG1G7230 Aethionema arabicum HOM05D004710 ORTHO05D005445 3.1e-74 283.5 220 70.9
AagrBONN_evm.TU.Sc2ySwM_228.2862 Anthoceros agrestis HOM05D004710 ORTHO05D005445 6.8e-74 282.3 396 43.4
Pp3c13_22640 Physcomitrium patens HOM05D004710 ORTHO05D005445 4.0e-58 229.9 400 39.0
AUR62017588 Chenopodium quinoa HOM05D004710 ORTHO05D005445 2.9e-56 223.8 202 63.9
MBI18_g48251_MAGBIO Magnolia biondii HOM05D004710 ORTHO05D005445 2.9e-56 223.8 264 54.9
CBR_g48423 Chara braunii HOM05D004710 ORTHO05D005445 3.0e-53 213.8 396 37.9
FAN18G0865 Fragaria x ananassa HOM05D004710 ORTHO05D005445 5.3e-50 203.0 164 68.3
Pp3c26_520 Physcomitrium patens HOM05D004710 ORTHO05D005445 3.2e-47 193.7 393 34.1
A03p17240 Brassica napus HOM05D004710 ORTHO05D005445 2.4e-42 177.6 279 46.6
Dinv09873 Davidia involucrata HOM05D004710 ORTHO05D005445 6.9e-42 176.0 133 72.2
FAN08G2380 Fragaria x ananassa HOM05D004710 ORTHO05D005445 6.7e-37 159.5 92 85.9
Haze_13559 Corylus avellana HOM05D004710 ORTHO05D005445 8.2e-35 152.5 86 87.2
Os07g0138100 Oryza sativa ssp. japonica HOM05D004710 ORTHO05D005445 2.6e-33 147.5 101 66.3
HPP92_018658 Vanilla planifolia HOM05D004710 ORTHO05D005445 5.7e-28 129.8 76 81.6
Aa31LG1G7240 Aethionema arabicum HOM05D004710 ORTHO05D005445 2.5e-23 114.4 145 54.5
SHI10530 Sapria himalayana HOM05D000906 ORTHO05D000713 2.1e-22 111.3 185 41.6
BraA03t10998Z Brassica rapa HOM05D004710 ORTHO05D005445 4.7e-22 110.2 122 53.3
AUR62017587 Chenopodium quinoa HOM05D004710 ORTHO05D005445 9.1e-18 95.9 93 54.8
Lj6g0000199 Lotus japonicus HOM05D004710 ORTHO05D005445 2.5e-15 87.8 67 73.1
Os05g0128700 Oryza sativa ssp. japonica HOM05D004710 ORTHO05D005445 1.1e-10 72.4 62 59.7
Os12g0505950 Oryza sativa ssp. japonica HOM05D004710 ORTHO05D005445 1.1e-10 72.4 62 59.7
BraA03t10997Z Brassica rapa HOM05D004710 ORTHO05D005445 2.4e-10 71.2 71 62.0
Os05g0153901 Oryza sativa ssp. japonica HOM05D004710 ORTHO05D005445 1.0e-08 65.9 62 54.8
Zm00001eb299690 Zea mays HOM05D004710 ORTHO05D005445 1.1e-07 62.4 62 59.7


User provided reference genes

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