Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_06247_v3 Cicer arietinum L. HOM05D001775 ORTHO05D009111 2.5e-33 144.8 70 100.0
Ca_29626_v3 Cicer arietinum L. HOM05D002588 ORTHO05D002979 3.2e-17 91.3 48 89.6
Psat5g008920 Pisum sativum HOM05D001775 ORTHO05D009111 2.7e-16 88.2 48 85.4
Medtr3g115970 Medicago truncatula HOM05D001775 ORTHO05D009111 4.7e-16 87.4 48 85.4
arahy.Tifrunner.gnm1.ann1.F3SGCQ Arachis hypogaea HOM05D001775 ORTHO05D009111 6.1e-16 87.0 48 85.4
arahy.Tifrunner.gnm1.ann1.LVT2R8 Arachis hypogaea HOM05D001775 ORTHO05D009111 6.1e-16 87.0 48 85.4
Phvul.009G007100 Phaseolus vulgaris HOM05D001775 ORTHO05D009111 8.0e-16 86.7 48 85.4
VMungo1309G0131 Vigna mungo HOM05D001775 ORTHO05D009111 8.0e-16 86.7 48 85.4
MSTRG.998 Avicennia marina HOM05D001775 ORTHO05D009111 1.4e-15 85.9 48 83.3
Cc10_g00360 Coffea canephora HOM05D001775 ORTHO05D009111 1.4e-15 85.9 48 83.3
Lsat_1_v5_gn_2_1300 Lactuca sativa HOM05D001775 ORTHO05D009111 1.4e-15 85.9 49 79.6
Oeu016875.3 Olea europaea HOM05D001775 ORTHO05D009111 1.4e-15 85.9 48 83.3
CAN.G2106.1 Capsicum annuum HOM05D001775 ORTHO05D009111 2.3e-15 85.1 48 81.2
Nitab4.5_0001756g0210 Nicotiana tabacum HOM05D001775 ORTHO05D009111 2.3e-15 85.1 48 81.2
Solyc04g082660.2 Solanum lycopersicum HOM05D001775 ORTHO05D009111 2.3e-15 85.1 48 81.2
Sopen04g036290 Solanum pennellii HOM05D001775 ORTHO05D009111 2.3e-15 85.1 48 81.2
PGSC0003DMG400009916 Solanum tuberosum HOM05D001775 ORTHO05D009111 2.3e-15 85.1 48 81.2
Cfa014122 Carpinus fangiana HOM05D001775 ORTHO05D009111 3.0e-15 84.7 48 81.2
Haze_22843 Corylus avellana HOM05D001775 ORTHO05D009111 3.0e-15 84.7 48 81.2
HanXRQChr06g0185251 Helianthus annuus HOM05D001775 ORTHO05D009111 3.9e-15 84.3 48 79.2
Lj1g0018680 Lotus japonicus HOM05D001775 ORTHO05D009111 3.9e-15 84.3 48 79.2
Lalb_Chr11g0061421 Lupinus albus HOM05D001775 ORTHO05D009111 3.9e-15 84.3 48 79.2
Actinidia37910 Actinidia chinensis HOM05D001775 ORTHO05D009111 5.2e-15 84.0 48 79.2
Cpa.g.sc26.153 Carica papaya HOM05D001775 ORTHO05D009111 5.2e-15 84.0 48 81.2
Peaxi162Scf00680g00417 Petunia axillaris HOM05D001775 ORTHO05D009111 6.7e-15 83.6 48 77.1
Potri.005G254900 Populus trichocarpa HOM05D001775 ORTHO05D009111 6.7e-15 83.6 48 79.2
TPR.G38162 Trifolium pratense HOM05D001775 ORTHO05D009111 6.7e-15 83.6 46 87.0
TAR628G0795 Trochodendron aralioides HOM05D002588 ORTHO05D002979 6.7e-15 83.6 48 79.2
CSS0014569 Camellia sinensis var. sinensis HOM05D001775 ORTHO05D009111 8.8e-15 83.2 48 77.1
Migut.C00375 Erythranthe guttata HOM05D001775 ORTHO05D009111 8.8e-15 83.2 48 81.2
Glyma.04G015400 Glycine max HOM05D001775 ORTHO05D009111 8.8e-15 83.2 48 81.2
Nn5g27670 Nelumbo nucifera HOM05D001775 ORTHO05D009111 8.8e-15 83.2 48 79.2
PGR083G0637 Punica granatum HOM05D001775 ORTHO05D009111 8.8e-15 83.2 48 81.2
Sabra05G0197400 Salix brachista HOM05D001775 ORTHO05D009111 8.8e-15 83.2 46 82.6
Aa31LG7G4970 Aethionema arabicum HOM05D001775 ORTHO05D009111 1.1e-14 82.8 48 79.2
ClCG11G018910 Citrullus lanatus HOM05D001775 ORTHO05D009111 1.1e-14 82.8 52 75.0
MELO3C017046.2 Cucumis melo HOM05D001775 ORTHO05D009111 1.1e-14 82.8 48 79.2
CsaV3_4G037510 Cucumis sativus L. HOM05D001775 ORTHO05D009111 1.1e-14 82.8 48 79.2
DCAR_016791 Daucus carota HOM05D000190 ORTHO05D000113 1.1e-14 82.8 48 77.1
Lj4C811T3 Lonicera japonica HOM05D001775 ORTHO05D009111 1.1e-14 82.8 48 79.2
Sed0011537 Sechium edule HOM05D001775 ORTHO05D009111 1.1e-14 82.8 48 79.2
Thecc.08G063800 Theobroma cacao HOM05D001775 ORTHO05D009111 1.1e-14 82.8 48 79.2
CiPaw.07G135100 Carya illinoinensis HOM05D001775 ORTHO05D009111 1.5e-14 82.4 48 79.2
CiPaw.08G076300 Carya illinoinensis HOM05D001775 ORTHO05D009111 1.5e-14 82.4 48 79.2
COL.COLO4_37860 Corchorus olitorius HOM05D001775 ORTHO05D009111 1.5e-14 82.4 48 77.1
TPR.G35796 Trifolium pratense HOM05D001775 ORTHO05D009111 1.5e-14 82.4 44 88.6
AUR62035158 Chenopodium quinoa HOM05D001775 ORTHO05D009111 2.0e-14 82.0 47 78.7
Ciclev10002424m.g Citrus clementina HOM05D001775 ORTHO05D009111 2.0e-14 82.0 48 77.1
Duzib116G0437 Durio zibethinus HOM05D001775 ORTHO05D009111 2.0e-14 82.0 48 77.1
Manes.05G125700 Manihot esculenta HOM05D001775 ORTHO05D009111 2.0e-14 82.0 48 77.1
GSVIVG01013409001 Vitis vinifera HOM05D001775 ORTHO05D009111 2.0e-14 82.0 46 82.6
AL1G33810 Arabidopsis lyrata HOM05D001775 ORTHO05D009111 2.6e-14 81.6 48 79.2
AT1G20810 Arabidopsis thaliana HOM05D001775 ORTHO05D009111 2.6e-14 81.6 48 79.2
BcaB07g32073 Brassica carinata HOM05D001775 ORTHO05D009111 2.6e-14 81.6 48 79.2
BcaC05g25982 Brassica carinata HOM05D001775 ORTHO05D009111 2.6e-14 81.6 48 79.2
A06p16800 Brassica napus HOM05D001775 ORTHO05D009111 2.6e-14 81.6 48 79.2
C05p19360 Brassica napus HOM05D001775 ORTHO05D009111 2.6e-14 81.6 48 79.2
BraA06t24787Z Brassica rapa HOM05D001775 ORTHO05D009111 2.6e-14 81.6 48 79.2
Gohir.A01G102700 Gossypium hirsutum HOM05D001775 ORTHO05D009111 2.6e-14 81.6 48 79.2
Gohir.D01G088000 Gossypium hirsutum HOM05D001775 ORTHO05D009111 2.6e-14 81.6 48 79.2
Gorai.002G113700 Gossypium raimondii HOM05D001775 ORTHO05D009111 2.6e-14 81.6 48 79.2
QL01p024803 Quercus lobata HOM05D001775 ORTHO05D009111 2.6e-14 81.6 50 72.0
THA.LOC104813746 Tarenaya hassleriana HOM05D001775 ORTHO05D009111 2.6e-14 81.6 48 79.2
vmacro04420 Vaccinium macrocarpon HOM05D001775 ORTHO05D009111 2.6e-14 81.6 49 73.5
Aqoxy5G00975 Aquilegia oxysepala HOM05D001775 ORTHO05D009111 3.3e-14 81.3 48 75.0
TWI12G0704 Tripterygium wilfordii HOM05D001775 ORTHO05D009111 3.3e-14 81.3 48 77.1
MBI05_g05759_MAGBIO Magnolia biondii HOM05D001775 ORTHO05D009111 4.4e-14 80.9 45 82.2
TAR376G0612 Trochodendron aralioides HOM05D001775 ORTHO05D009111 4.4e-14 80.9 48 79.2
Carub.0001s2026 Capsella rubella HOM05D001775 ORTHO05D009111 5.7e-14 80.5 48 77.1
CARHR021230 Cardamine hirsuta HOM05D001775 ORTHO05D009111 5.7e-14 80.5 48 77.1
AUR62024106 Chenopodium quinoa HOM05D001775 ORTHO05D009111 5.7e-14 80.5 46 78.3
Thhalv10008601m.g Eutrema salsugineum HOM05D001775 ORTHO05D009111 5.7e-14 80.5 48 77.1
Sc26g0004700 Simmondsia chinensis HOM05D001775 ORTHO05D009111 5.7e-14 80.5 48 75.0
EL10Ac1g01883 Beta vulgaris HOM05D001775 ORTHO05D009111 7.4e-14 80.1 46 78.3
Hma1.2p1_0612F.1_g188980 Hydrangea macrophylla HOM05D001775 ORTHO05D009111 7.4e-14 80.1 48 72.9
MD06G1005700 Malus domestica HOM05D001775 ORTHO05D009111 7.4e-14 80.1 46 80.4
Prupe.5G007000 Prunus persica HOM05D001775 ORTHO05D009111 7.4e-14 80.1 46 80.4
Rhsim07G0257200 Rhododendron simsii HOM05D001775 ORTHO05D009111 7.4e-14 80.1 48 75.0
SEGI_26708 Sequoiadendron giganteum HOM05D001775 ORTHO05D009111 7.4e-14 80.1 49 75.5
RcHm_v2.0_Chr7g0216351 Rosa chinensis HOM05D001775 ORTHO05D009111 9.7e-14 79.7 46 80.4
Sp1g18500 Schrenkiella parvula HOM05D001775 ORTHO05D009111 1.3e-13 79.3 48 75.0
Hund05086 Selenicereus undatus HOM05D001775 ORTHO05D009111 1.3e-13 79.3 48 75.0
Ah.00g001110 Amaranthus hybridus HOM05D001775 ORTHO05D009111 1.7e-13 79.0 46 76.1
ATR0807G105 Amborella trichopoda HOM05D001775 ORTHO05D009111 1.7e-13 79.0 45 82.2
BcaB03g16041 Brassica carinata HOM05D001775 ORTHO05D009111 1.7e-13 79.0 45 82.2
ECA238G3840 Erigeron canadensis HOM05D001775 ORTHO05D009111 1.7e-13 79.0 46 76.1
Atru.chr13.83 Acer truncatum HOM05D001775 ORTHO05D009111 2.2e-13 78.6 46 78.3
FvH4_5g25880 Fragaria vesca HOM05D001775 ORTHO05D009111 2.2e-13 78.6 46 78.3
FAN08G0029 Fragaria x ananassa HOM05D001775 ORTHO05D009111 2.2e-13 78.6 46 78.3
FAN13G0876 Fragaria x ananassa HOM05D001775 ORTHO05D009111 2.2e-13 78.6 46 78.3
Pp3c25_1450 Physcomitrium patens HOM05D001775 ORTHO05D009111 2.2e-13 78.6 48 72.9
QL02p015424 Quercus lobata HOM05D001775 ORTHO05D009111 2.2e-13 78.6 48 72.9
PSO170G2582 Papaver somniferum HOM05D001775 ORTHO05D009111 3.7e-13 77.8 48 72.9
SMO347G0534 Selaginella moellendorffii HOM05D001775 ORTHO05D009111 3.7e-13 77.8 48 72.9
Eucgr.F01800 Eucalyptus grandis HOM05D001775 ORTHO05D009111 6.3e-13 77.0 48 75.0
Os02g0117600 Oryza sativa ssp. japonica HOM05D001775 ORTHO05D009111 6.3e-13 77.0 48 72.9
CDE04G0169 Ceratophyllum demersum HOM05D001775 ORTHO05D009111 8.2e-13 76.6 48 72.9
PSO210G1579 Papaver somniferum HOM05D001775 ORTHO05D009111 8.2e-13 76.6 48 70.8
SGA_v2.0_scaffold133G34596 Striga asiatica HOM05D001775 ORTHO05D009111 8.2e-13 76.6 44 79.5
Zm00001eb209360 Zea mays HOM05D001775 ORTHO05D009111 8.2e-13 76.6 45 77.8
FAN04G3097 Fragaria x ananassa HOM05D001775 ORTHO05D009111 1.2e-11 72.8 39 84.6
Oeu019571.1 Olea europaea HOM05D001775 ORTHO05D009111 7.7e-11 70.1 49 73.5
AagrBONN_evm.TU.Sc2ySwM_344.2743 Anthoceros agrestis HOM05D001775 ORTHO05D009111 1.3e-10 69.3 48 64.6
Gohir.A01G103050 Gossypium hirsutum HOM05D001775 ORTHO05D009111 5.2e-07 57.4 32 81.2


User provided reference genes

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