Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_06238_v3 Cicer arietinum L. HOM05D003667 ORTHO05D004397 1.0e-109 400.2 224 100.0
TPR.G8769 Trifolium pratense HOM05D003667 ORTHO05D004397 7.5e-100 367.5 224 87.5
Psat2g018160 Pisum sativum HOM05D003667 ORTHO05D004397 2.8e-99 365.5 224 90.6
Medtr5g090520 Medicago truncatula HOM05D003667 ORTHO05D004397 6.5e-96 354.4 224 85.3
Glyma.08G304700 Glycine max HOM05D003667 ORTHO05D004397 7.5e-92 340.9 229 79.5
Phvul.006G027100 Phaseolus vulgaris HOM05D003667 ORTHO05D004397 9.8e-92 340.5 226 80.5
Glyma.18G114700 Glycine max HOM05D003667 ORTHO05D004397 1.4e-90 336.7 226 80.1
Ca_13917_v3 Cicer arietinum L. HOM05D003667 ORTHO05D004397 7.7e-89 330.9 227 77.5
arahy.Tifrunner.gnm1.ann1.7QGR70 Arachis hypogaea HOM05D003667 ORTHO05D004397 1.3e-88 330.1 224 78.1
arahy.Tifrunner.gnm1.ann1.FV18MX Arachis hypogaea HOM05D003667 ORTHO05D004397 1.3e-88 330.1 224 78.1
Medtr3g450200 Medicago truncatula HOM05D003667 ORTHO05D004397 1.5e-87 326.6 227 76.2
Lj2g0005685 Lotus japonicus HOM05D003667 ORTHO05D004397 3.3e-87 325.5 224 77.7
arahy.Tifrunner.gnm1.ann1.VNW58P Arachis hypogaea HOM05D003667 ORTHO05D004397 5.6e-87 324.7 224 77.2
Psat5g209680 Pisum sativum HOM05D003667 ORTHO05D004397 6.1e-86 321.2 225 76.0
VMungo0540G2144 Vigna mungo HOM05D003667 ORTHO05D004397 2.3e-85 319.3 229 76.0
Lalb_Chr17g0348151 Lupinus albus HOM05D003667 ORTHO05D004397 5.2e-85 318.2 224 76.3
TPR.G14738 Trifolium pratense HOM05D003667 ORTHO05D004397 2.2e-83 312.8 223 75.8
CsaV3_4G012110 Cucumis sativus L. HOM05D003667 ORTHO05D004397 4.7e-78 295.0 223 70.9
ClCG04G005470 Citrullus lanatus HOM05D003667 ORTHO05D004397 8.9e-77 290.8 223 69.1
MELO3C008823.2 Cucumis melo HOM05D003667 ORTHO05D004397 1.2e-76 290.4 223 70.0
RcHm_v2.0_Chr5g0045181 Rosa chinensis HOM05D003667 ORTHO05D004397 1.2e-76 290.4 223 68.6
Hma1.2p1_0106F.1_g051140 Hydrangea macrophylla HOM05D003667 ORTHO05D004397 2.0e-76 289.7 220 69.5
FAN25G1089 Fragaria x ananassa HOM05D003667 ORTHO05D004397 7.5e-76 287.7 222 68.0
MD02G1195300 Malus domestica HOM05D003667 ORTHO05D004397 7.5e-76 287.7 224 68.3
COL.COLO4_28620 Corchorus olitorius HOM05D003667 ORTHO05D004397 1.3e-75 287.0 224 70.1
ClCG02G007830 Citrullus lanatus HOM05D003667 ORTHO05D004397 4.9e-75 285.0 224 66.5
Thecc.05G244000 Theobroma cacao HOM05D003667 ORTHO05D004397 8.3e-75 284.3 224 69.6
Actinidia06203 Actinidia chinensis HOM05D003667 ORTHO05D004397 1.1e-74 283.9 230 67.8
Duzib106G0749 Durio zibethinus HOM05D003667 ORTHO05D004397 1.1e-74 283.9 224 68.8
FAN21G0540 Fragaria x ananassa HOM05D003667 ORTHO05D004397 1.1e-74 283.9 222 67.6
FvH4_3g25040 Fragaria vesca HOM05D003667 ORTHO05D004397 1.4e-74 283.5 219 67.6
FAN11G0144 Fragaria x ananassa HOM05D003667 ORTHO05D004397 1.4e-74 283.5 219 67.6
Gohir.A11G231200 Gossypium hirsutum HOM05D003667 ORTHO05D004397 2.4e-74 282.7 221 67.9
Gohir.D11G242600 Gossypium hirsutum HOM05D003667 ORTHO05D004397 2.4e-74 282.7 221 68.3
Gorai.007G256800 Gossypium raimondii HOM05D003667 ORTHO05D004397 3.2e-74 282.3 221 67.9
Lj2A112G40 Lonicera japonica HOM05D003667 ORTHO05D004397 3.2e-74 282.3 221 67.4
Actinidia07960 Actinidia chinensis HOM05D003667 ORTHO05D004397 9.2e-74 280.8 230 66.5
Sed0010728 Sechium edule HOM05D003667 ORTHO05D004397 1.2e-73 280.4 225 66.7
CANSAT78G1932 Cannabis sativa HOM05D003667 ORTHO05D004397 3.5e-73 278.9 225 68.0
Ciclev10022078m.g Citrus clementina HOM05D003667 ORTHO05D004397 6.0e-73 278.1 223 68.2
GSVIVG01029952001 Vitis vinifera HOM05D003667 ORTHO05D004397 6.0e-73 278.1 222 67.1
Manes.09G137700 Manihot esculenta HOM05D003667 ORTHO05D004397 1.7e-72 276.6 223 67.7
Atru.chr2.1481 Acer truncatum HOM05D003667 ORTHO05D004397 2.3e-72 276.2 219 70.3
Eucgr.K01520 Eucalyptus grandis HOM05D003667 ORTHO05D004397 5.0e-72 275.0 229 65.9
Sed0016620 Sechium edule HOM05D003667 ORTHO05D004397 8.6e-72 274.2 225 66.7
Rhsim13G0206500 Rhododendron simsii HOM05D003667 ORTHO05D004397 4.3e-71 271.9 222 68.5
TWI38G1994 Tripterygium wilfordii HOM05D003667 ORTHO05D004397 5.6e-71 271.6 223 66.4
CSS0004374 Camellia sinensis var. sinensis HOM05D003667 ORTHO05D004397 1.6e-70 270.0 226 65.0
CSS0013214 Camellia sinensis var. sinensis HOM05D003667 ORTHO05D004397 2.8e-70 269.2 226 64.6
Haze_14026 Corylus avellana HOM05D003667 ORTHO05D004397 1.4e-69 266.9 219 67.1
Prupe.2G153200 Prunus persica HOM05D003667 ORTHO05D004397 1.8e-69 266.5 222 66.2
TWI38G1198 Tripterygium wilfordii HOM05D003667 ORTHO05D004397 3.1e-69 265.8 222 65.3
CiPaw.03G011100 Carya illinoinensis HOM05D003667 ORTHO05D004397 6.8e-69 264.6 220 65.0
Sopen07g024170 Solanum pennellii HOM05D003667 ORTHO05D004397 4.4e-68 261.9 230 63.0
Potri.013G062900 Populus trichocarpa HOM05D003667 ORTHO05D004397 5.8e-68 261.5 221 63.8
Solyc07g047720.3 Solanum lycopersicum HOM05D003667 ORTHO05D004397 5.8e-68 261.5 232 62.5
Sabra13G0056100 Salix brachista HOM05D003667 ORTHO05D004397 2.2e-67 259.6 216 65.3
TAR623G0153 Trochodendron aralioides HOM05D003667 ORTHO05D004397 2.9e-67 259.2 220 63.2
PGSC0003DMG400006127 Solanum tuberosum HOM05D003667 ORTHO05D004397 4.9e-67 258.5 239 60.3
Oeu035461.1 Olea europaea HOM05D003667 ORTHO05D004397 1.1e-66 257.3 233 60.1
PGSC0003DMG400018832 Solanum tuberosum HOM05D003667 ORTHO05D004397 1.1e-66 257.3 233 63.5
Hund10761 Selenicereus undatus HOM05D003667 ORTHO05D004397 1.9e-66 256.5 228 62.3
HanXRQChr07g0197181 Helianthus annuus HOM05D003667 ORTHO05D004397 2.4e-66 256.1 221 62.4
Nitab4.5_0001774g0040 Nicotiana tabacum HOM05D003667 ORTHO05D004397 2.4e-66 256.1 236 61.0
THA.LOC104823778 Tarenaya hassleriana HOM05D003667 ORTHO05D004397 2.4e-66 256.1 228 64.0
AL4G33130 Arabidopsis lyrata HOM05D003667 ORTHO05D004397 4.1e-66 255.4 222 60.4
MBI17_g12494_MAGBIO Magnolia biondii HOM05D003667 ORTHO05D004397 4.1e-66 255.4 222 63.1
Nn7g37255 Nelumbo nucifera HOM05D003667 ORTHO05D004397 5.4e-66 255.0 219 63.9
Cpa.g.sc28.13 Carica papaya HOM05D003667 ORTHO05D004397 1.2e-65 253.8 223 62.3
Nitab4.5_0001741g0020 Nicotiana tabacum HOM05D003667 ORTHO05D004397 1.2e-65 253.8 231 63.6
A05p08960 Brassica napus HOM05D003667 ORTHO05D004397 7.8e-65 251.1 222 60.4
CAN.G992.19 Capsicum annuum HOM05D003667 ORTHO05D004397 1.0e-64 250.8 236 60.2
Nn6g34578 Nelumbo nucifera HOM05D003667 ORTHO05D004397 1.0e-64 250.8 219 61.2
Carub.0004s1876 Capsella rubella HOM05D003667 ORTHO05D004397 1.3e-64 250.4 222 59.5
MBI05_g12099_MAGBIO Magnolia biondii HOM05D003667 ORTHO05D004397 1.3e-64 250.4 210 64.3
AT2G36900 Arabidopsis thaliana HOM05D003667 ORTHO05D004397 2.3e-64 249.6 221 59.7
C04p11070 Brassica napus HOM05D003667 ORTHO05D004397 3.0e-64 249.2 222 59.5
BolC4t22755H Brassica oleracea HOM05D003667 ORTHO05D004397 3.0e-64 249.2 222 59.5
BraA05t19858Z Brassica rapa HOM05D003667 ORTHO05D004397 3.0e-64 249.2 222 59.9
CARHR131380 Cardamine hirsuta HOM05D003667 ORTHO05D004397 6.6e-64 248.1 222 59.5
Sp4g19200 Schrenkiella parvula HOM05D003667 ORTHO05D004397 6.6e-64 248.1 222 59.0
Thhalv10017208m.g Eutrema salsugineum HOM05D003667 ORTHO05D004397 1.1e-63 247.3 222 59.5
BcaB02g09321 Brassica carinata HOM05D003667 ORTHO05D004397 2.5e-63 246.1 222 59.0
MSTRG.26557 Avicennia marina HOM05D003667 ORTHO05D004397 5.6e-63 245.0 235 58.7
PSO170G5262 Papaver somniferum HOM05D003667 ORTHO05D004397 5.6e-63 245.0 219 59.4
PSO357G0141 Papaver somniferum HOM05D003667 ORTHO05D004397 7.3e-63 244.6 219 59.8
PSO675G2224 Papaver somniferum HOM05D003667 ORTHO05D004397 7.3e-63 244.6 217 59.4
Thhalv10014611m.g Eutrema salsugineum HOM05D003667 ORTHO05D004397 1.6e-62 243.4 222 58.6
Aqoxy1G00535 Aquilegia oxysepala HOM05D003667 ORTHO05D004397 6.2e-62 241.5 219 58.4
PSO541G6155 Papaver somniferum HOM05D003667 ORTHO05D004397 8.1e-62 241.1 217 58.5
HanXRQChr14g0453611 Helianthus annuus HOM05D003667 ORTHO05D004397 1.4e-61 240.4 221 60.6
CARHR257860 Cardamine hirsuta HOM05D003667 ORTHO05D004397 4.0e-61 238.8 222 57.2
Migut.L01870 Erythranthe guttata HOM05D003667 ORTHO05D004397 6.8e-61 238.0 234 57.3
AL8G24670 Arabidopsis lyrata HOM05D003667 ORTHO05D004397 1.5e-60 236.9 222 57.7
arahy.Tifrunner.gnm1.ann1.B982CP Arachis hypogaea HOM05D003667 ORTHO05D004397 2.0e-60 236.5 224 62.1
Aa31LG6G14320 Aethionema arabicum HOM05D003667 ORTHO05D004397 2.6e-60 236.1 224 57.6
AT5G50440 Arabidopsis thaliana HOM05D003667 ORTHO05D004397 3.4e-60 235.7 222 57.2
Lj6g0022641 Lotus japonicus HOM05D003667 ORTHO05D004397 5.8e-60 235.0 159 79.2
Carub.0008s1055 Capsella rubella HOM05D003667 ORTHO05D004397 7.6e-60 234.6 222 55.9
Zm00001eb052810 Zea mays HOM05D003667 ORTHO05D004397 1.9e-58 229.9 232 54.7
CDE10G1021 Ceratophyllum demersum HOM05D003667 ORTHO05D004397 9.2e-58 227.6 218 58.3
Lsat_1_v5_gn_2_103600 Lactuca sativa HOM05D003667 ORTHO05D004397 2.1e-57 226.5 218 58.3
Cc03_g11050 Coffea canephora HOM05D003667 ORTHO05D004397 2.7e-57 226.1 224 57.6
Lsat_1_v5_gn_6_31701 Lactuca sativa HOM05D003667 ORTHO05D004397 1.0e-56 224.2 222 57.2
Os03g0655200 Oryza sativa ssp. japonica HOM05D003667 ORTHO05D004397 8.6e-56 221.1 228 53.5
unitig_8.g4943 Utricularia gibba HOM05D003667 ORTHO05D004397 1.5e-55 220.3 223 54.7
Peaxi162Scf00776g00027 Petunia axillaris HOM05D003667 ORTHO05D004397 1.9e-55 219.9 223 57.0
SGA_v2.0_scaffold41G15803 Striga asiatica HOM05D003667 ORTHO05D004397 2.1e-54 216.5 277 47.3
HPP92_027259 Vanilla planifolia HOM05D003667 ORTHO05D004397 4.7e-54 215.3 180 63.3
SGA_v2.0_scaffold392G50657 Striga asiatica HOM05D003667 ORTHO05D004397 1.4e-53 213.8 255 50.2
CiPaw.04G007600 Carya illinoinensis HOM05D003667 ORTHO05D004397 3.1e-53 212.6 162 69.8
Mapoly0001s0234 Marchantia polymorpha HOM05D003667 ORTHO05D004397 4.0e-53 212.2 226 52.7
DCAR_013483 Daucus carota HOM05D003667 ORTHO05D004397 5.2e-53 211.8 163 71.2
Dinv05568 Davidia involucrata HOM05D003667 ORTHO05D004397 8.9e-53 211.1 169 67.5
SEGI_40073 Sequoiadendron giganteum HOM05D003667 ORTHO05D004397 9.9e-52 207.6 230 49.1
EL10Ac7g17477 Beta vulgaris HOM05D003667 ORTHO05D004397 4.9e-51 205.3 222 57.7
AUR62008662 Chenopodium quinoa HOM05D003667 ORTHO05D004397 1.4e-50 203.8 220 55.0
Prupe.7G022400 Prunus persica HOM05D003667 ORTHO05D004397 1.9e-50 203.4 161 67.7
SMO358G0442 Selaginella moellendorffii HOM05D003667 ORTHO05D004397 4.2e-50 202.2 229 49.8
ECA238G3478 Erigeron canadensis HOM05D003667 ORTHO05D004397 7.8e-49 198.0 222 52.7
Lalb_Chr10g0106501 Lupinus albus HOM05D003667 ORTHO05D004397 3.0e-48 196.1 116 87.9
BcaC02g11814 Brassica carinata HOM05D003667 ORTHO05D004397 4.3e-47 192.2 163 62.6
Sc01g0006150 Simmondsia chinensis HOM05D003667 ORTHO05D004397 1.1e-45 187.6 172 59.3
Pp3c7_13000 Physcomitrium patens HOM05D003667 ORTHO05D004397 3.1e-45 186.0 245 42.9
Rhsim02G0195900 Rhododendron simsii HOM05D003667 ORTHO05D004397 3.1e-45 186.0 142 71.8
Ah.02g128310 Amaranthus hybridus HOM05D003667 ORTHO05D004397 9.9e-44 181.0 170 59.4
Pp3c11_11980 Physcomitrium patens HOM05D003667 ORTHO05D004397 1.3e-43 180.6 241 42.7
MSTRG.10431 Avicennia marina HOM05D003667 ORTHO05D004397 9.6e-39 164.5 146 63.0
Dinv25059 Davidia involucrata HOM05D003667 ORTHO05D004397 9.0e-37 157.9 122 68.9
Cre12.g554200 Chlamydomonas reinhardtii HOM05D003667 ORTHO05D004397 5.8e-36 155.2 221 43.4
unitig_578.g16057 Utricularia gibba HOM05D003667 ORTHO05D004397 4.9e-35 152.1 145 60.0
Haze_20440 Corylus avellana HOM05D003667 ORTHO05D004397 1.6e-33 147.1 116 69.0
Cfa017699 Carpinus fangiana HOM05D003667 ORTHO05D004397 2.7e-33 146.4 116 67.2
CDE10G1036 Ceratophyllum demersum HOM05D003667 ORTHO05D004397 6.0e-33 145.2 218 42.2
AagrBONN_evm.TU.Sc2ySwM_117.3822 Anthoceros agrestis HOM05D003667 ORTHO05D004397 1.5e-31 140.6 187 44.9
AagrBONN_evm.TU.Sc2ySwM_362.869 Anthoceros agrestis HOM05D003667 ORTHO05D004397 3.3e-31 139.4 193 44.6
Nitab4.5_0001701g0060 Nicotiana tabacum HOM05D003667 ORTHO05D004397 9.6e-31 137.9 221 41.6
Glyma.02G282800 Glycine max HOM05D003667 ORTHO05D004397 2.1e-30 136.7 225 45.3
CSS0044789 Camellia sinensis var. sinensis HOM05D003667 ORTHO05D004397 1.8e-29 133.7 143 57.3
Actinidia03933 Actinidia chinensis HOM05D003667 ORTHO05D004397 9.0e-29 131.3 138 56.5
Oeu063104.1 Olea europaea HOM05D003667 ORTHO05D004397 9.0e-29 131.3 234 39.3
Solyc05g040100.4 Solanum lycopersicum HOM05D003667 ORTHO05D004397 9.0e-29 131.3 191 45.5
arahy.Tifrunner.gnm1.ann1.K13S6W Arachis hypogaea HOM05D004599 ORTHO05D005564 2.0e-28 130.2 140 55.0
MCO05G601 Micromonas commoda HOM05D003667 ORTHO05D004397 5.8e-28 128.6 214 34.6
Oeu003870.1 Olea europaea HOM05D003667 ORTHO05D004397 2.9e-27 126.3 126 61.1
BcaC02g10601 Brassica carinata HOM05D003667 ORTHO05D004397 1.2e-25 120.9 181 43.1
PRCOL_00002098 Prasinoderma coloniale HOM05D003667 ORTHO05D004397 7.9e-25 118.2 222 36.5
QL07p048797 Quercus lobata HOM05D000002 ORTHO05D000001 1.8e-24 117.1 184 44.6
arahy.Tifrunner.gnm1.ann1.X6I371 Arachis hypogaea HOM05D003667 ORTHO05D004397 1.3e-22 110.9 75 77.3
arahy.Tifrunner.gnm1.ann1.835HL2 Arachis hypogaea HOM05D004313 ORTHO05D004397 6.3e-22 108.6 92 62.0
AUR62033108 Chenopodium quinoa HOM05D003667 ORTHO05D004397 1.1e-21 107.8 90 67.8
CAN.G1036.8 Capsicum annuum HOM05D003667 ORTHO05D004397 6.9e-21 105.1 139 48.9
Actinidia37807 Actinidia chinensis HOM05D003667 ORTHO05D004397 2.9e-19 99.8 171 40.9
TPR.G36075 Trifolium pratense HOM05D003667 ORTHO05D004397 4.2e-18 95.9 54 87.0
AagrBONN_evm.TU.Sc2ySwM_368.3326 Anthoceros agrestis HOM05D003667 ORTHO05D004397 2.7e-17 93.2 181 37.0
arahy.Tifrunner.gnm1.ann1.SJAT5A Arachis hypogaea HOM05D003667 ORTHO05D003672 2.7e-17 93.2 92 56.5
Rhsim02G0194700 Rhododendron simsii HOM05D003667 ORTHO05D004397 2.7e-17 93.2 78 62.8
Rhsim02G0195800 Rhododendron simsii HOM05D003667 ORTHO05D004397 2.7e-17 93.2 78 62.8
arahy.Tifrunner.gnm1.ann1.SS7A45 Arachis hypogaea HOM05D000726 ORTHO05D004397 1.3e-16 90.9 80 62.5
CBR_g20321 Chara braunii HOM05D003667 ORTHO05D004397 3.0e-16 89.7 86 53.5
BcaB06g28959 Brassica carinata HOM05D003667 ORTHO05D004397 3.9e-16 89.4 92 54.3
CSS0038188 Camellia sinensis var. sinensis HOM05D003667 ORTHO05D004397 4.3e-15 85.9 78 56.4
Lalb_Chr10g0106511 Lupinus albus HOM05D003667 ORTHO05D004397 1.3e-14 84.3 82 58.5
BraA04t18306Z Brassica rapa HOM05D003667 ORTHO05D004397 1.6e-14 84.0 52 76.9
BolC4t28047H Brassica oleracea HOM05D003667 ORTHO05D004397 6.3e-14 82.0 53 75.5
Nitab4.5_0002669g0010 Nicotiana tabacum HOM05D003667 ORTHO05D004397 1.4e-13 80.9 95 57.9
Ah.08g213160 Amaranthus hybridus HOM05D003667 ORTHO05D004397 5.3e-13 79.0 70 61.4
A04p28220 Brassica napus HOM05D003667 ORTHO05D004397 5.3e-13 79.0 53 73.6
C04p65580 Brassica napus HOM05D003667 ORTHO05D004397 5.3e-13 79.0 53 73.6
FAN16G1288 Fragaria x ananassa HOM05D003667 ORTHO05D004397 5.3e-13 79.0 55 70.9
AUR62033107 Chenopodium quinoa HOM05D003667 ORTHO05D004397 1.3e-11 74.3 83 54.2
FvH4_3g32534 Fragaria vesca HOM05D003667 ORTHO05D004397 8.5e-11 71.6 64 65.6
Ah.08g213170 Amaranthus hybridus HOM05D003667 ORTHO05D004397 1.4e-10 70.9 80 55.0
Solyc05g040090.1 Solanum lycopersicum HOM05D003667 ORTHO05D004397 6.7e-08 62.0 81 45.7
MD05G1212000 Malus domestica HOM05D003667 ORTHO05D246792 1.5e-07 60.8 43 67.4
VMungo0720G0063 Vigna mungo HOM05D003667 ORTHO05D004397 2.0e-07 60.5 103 40.8
C04p25660 Brassica napus HOM05D003667 ORTHO05D004397 2.6e-07 60.1 204 27.9
C05p50890 Brassica napus HOM05D003667 ORTHO05D004397 2.6e-07 60.1 204 27.9
FvH4_5g38702 Fragaria vesca HOM05D003667 ORTHO05D004397 2.2e-06 57.0 44 68.2
Medtr1g102820 Medicago truncatula HOM05D003667 ORTHO05D004397 2.8e-06 56.6 57 56.1
VMungo1383G0333 Vigna mungo HOM05D003667 ORTHO05D036049 6.3e-06 55.5 45 73.3


User provided reference genes

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