Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_06224_v3 Cicer arietinum L. HOM05D004400 ORTHO05D005479 9.2e-234 813.1 402 100.0
Medtr5g090070 Medicago truncatula HOM05D004400 ORTHO05D005479 1.1e-207 726.5 402 87.3
TPR.G19354 Trifolium pratense HOM05D004400 ORTHO05D005479 5.1e-200 701.0 402 84.3
Psat2g019120 Pisum sativum HOM05D004400 ORTHO05D005479 3.3e-199 698.4 402 84.3
MSTRG.17628 Avicennia marina HOM05D004400 ORTHO05D005479 8.4e-195 683.7 402 81.6
Lalb_Chr17g0348031 Lupinus albus HOM05D004400 ORTHO05D005479 1.1e-194 683.3 402 82.1
Oeu025899.1 Olea europaea HOM05D004400 ORTHO05D005479 1.1e-194 683.3 402 81.8
Nitab4.5_0011805g0020 Nicotiana tabacum HOM05D004400 ORTHO05D005479 7.2e-194 680.6 402 81.6
CAN.G484.7 Capsicum annuum HOM05D004400 ORTHO05D005479 1.2e-193 679.9 402 81.3
Nn2g14932 Nelumbo nucifera HOM05D004400 ORTHO05D005479 1.2e-193 679.9 402 81.6
unitig_8.g2992 Utricularia gibba HOM05D004400 ORTHO05D005479 1.6e-193 679.5 402 81.6
CiPaw.13G152600 Carya illinoinensis HOM05D004400 ORTHO05D005479 3.5e-193 678.3 402 81.1
Ca_13793_v3 Cicer arietinum L. HOM05D004400 ORTHO05D005479 6.1e-193 677.6 402 82.1
Lj6g0016070 Lotus japonicus HOM05D004400 ORTHO05D005479 1.3e-192 676.4 402 80.8
Glyma.18G116900 Glycine max HOM05D004400 ORTHO05D005479 2.3e-192 675.6 402 81.3
Solyc12g099930.2 Solanum lycopersicum HOM05D004400 ORTHO05D005479 2.3e-192 675.6 402 80.3
Sopen12g034550 Solanum pennellii HOM05D004400 ORTHO05D005479 2.3e-192 675.6 402 80.3
TWI75G1130 Tripterygium wilfordii HOM05D004400 ORTHO05D005479 2.3e-192 675.6 402 81.1
Glyma.08G302600 Glycine max HOM05D004400 ORTHO05D005479 3.9e-192 674.9 402 81.3
QL01p017697 Quercus lobata HOM05D004400 ORTHO05D005479 3.9e-192 674.9 401 81.0
ClCG02G022970 Citrullus lanatus HOM05D004400 ORTHO05D005479 5.1e-192 674.5 411 79.6
CsaV3_6G039090 Cucumis sativus L. HOM05D004400 ORTHO05D005479 6.7e-192 674.1 402 79.9
Lalb_Chr14g0365141 Lupinus albus HOM05D004400 ORTHO05D005479 6.7e-192 674.1 402 81.3
THA.LOC104826484 Tarenaya hassleriana HOM05D004400 ORTHO05D005479 6.7e-192 674.1 402 80.6
Thecc.09G244100 Theobroma cacao HOM05D004400 ORTHO05D005479 6.7e-192 674.1 402 80.1
HPP92_001014 Vanilla planifolia HOM05D004400 ORTHO05D005479 6.7e-192 674.1 402 80.8
CiPaw.14G115100 Carya illinoinensis HOM05D004400 ORTHO05D005479 8.7e-192 673.7 402 80.8
Cc01_g05790 Coffea canephora HOM05D004400 ORTHO05D005479 8.7e-192 673.7 402 80.8
PGSC0003DMG400004652 Solanum tuberosum HOM05D004400 ORTHO05D005479 8.7e-192 673.7 402 80.1
ATR0721G062 Amborella trichopoda HOM05D004400 ORTHO05D005479 1.1e-191 673.3 402 80.3
MELO3C015151.2 Cucumis melo HOM05D004400 ORTHO05D005479 1.9e-191 672.5 402 79.9
MD11G1194500 Malus domestica HOM05D004400 ORTHO05D005479 1.9e-191 672.5 402 80.3
Sed0009312 Sechium edule HOM05D004400 ORTHO05D005479 1.9e-191 672.5 402 80.1
Prupe.4G258800 Prunus persica HOM05D004400 ORTHO05D005479 3.3e-191 671.8 402 80.3
PGR102G2835 Punica granatum HOM05D004400 ORTHO05D005479 3.3e-191 671.8 402 80.3
RcHm_v2.0_Chr5g0050781 Rosa chinensis HOM05D004400 ORTHO05D005479 3.3e-191 671.8 402 80.1
Duzib170G1108 Durio zibethinus HOM05D004400 ORTHO05D005479 4.3e-191 671.4 402 79.9
Gorai.009G074800 Gossypium raimondii HOM05D004400 ORTHO05D005479 4.3e-191 671.4 402 79.6
Hma1.2p1_0115F.1_g056060 Hydrangea macrophylla HOM05D004400 ORTHO05D005479 4.3e-191 671.4 402 80.6
MD03G1168700 Malus domestica HOM05D004400 ORTHO05D005479 4.3e-191 671.4 402 80.1
Dinv36191 Davidia involucrata HOM05D004400 ORTHO05D005479 5.7e-191 671.0 402 80.6
Gohir.A05G070800 Gossypium hirsutum HOM05D004400 ORTHO05D005479 5.7e-191 671.0 402 79.6
Hma1.2p1_0922F.1_g236910 Hydrangea macrophylla HOM05D004400 ORTHO05D005479 5.7e-191 671.0 402 80.3
SalBow6G1637 Salvia bowleyana HOM05D004400 ORTHO05D005479 5.7e-191 671.0 402 80.6
CSS0001177 Camellia sinensis var. sinensis HOM05D004400 ORTHO05D005479 7.4e-191 670.6 402 80.6
CSS0007609 Camellia sinensis var. sinensis HOM05D004400 ORTHO05D005479 7.4e-191 670.6 402 79.9
CSS0015379 Camellia sinensis var. sinensis HOM05D004400 ORTHO05D005479 7.4e-191 670.6 402 80.6
FAN11G2969 Fragaria x ananassa HOM05D004400 ORTHO05D005479 7.4e-191 670.6 402 80.1
FAN21G0985 Fragaria x ananassa HOM05D004400 ORTHO05D005479 7.4e-191 670.6 402 80.3
SGA_v2.0_scaffold3G01468 Striga asiatica HOM05D004400 ORTHO05D005479 7.4e-191 670.6 402 80.3
Ciclev10015490m.g Citrus clementina HOM05D004400 ORTHO05D005479 9.7e-191 670.2 402 79.1
MELO3C014568.2 Cucumis melo HOM05D004400 ORTHO05D005479 1.3e-190 669.8 417 77.9
FAN25G1578 Fragaria x ananassa HOM05D004400 ORTHO05D005479 1.3e-190 669.8 402 80.1
Gohir.D05G073700 Gossypium hirsutum HOM05D004400 ORTHO05D005479 1.3e-190 669.8 402 79.6
TPR.G8487 Trifolium pratense HOM05D004400 ORTHO05D005479 1.3e-190 669.8 402 80.6
CANSAT64G2455 Cannabis sativa HOM05D004400 ORTHO05D005479 1.6e-190 669.5 402 79.9
Cpa.g.sc892.2 Carica papaya HOM05D004400 ORTHO05D005479 1.6e-190 669.5 402 80.6
CsaV3_1G043170 Cucumis sativus L. HOM05D004400 ORTHO05D005479 1.6e-190 669.5 402 79.6
FvH4_3g28090 Fragaria vesca HOM05D004400 ORTHO05D005479 1.6e-190 669.5 402 79.9
Gohir.D13G221100 Gossypium hirsutum HOM05D004400 ORTHO05D005479 1.6e-190 669.5 402 79.4
Gorai.013G252200 Gossypium raimondii HOM05D004400 ORTHO05D005479 1.6e-190 669.5 402 79.4
BcaC04g23083 Brassica carinata HOM05D004400 ORTHO05D005479 2.2e-190 669.1 402 80.6
A09p10380 Brassica napus HOM05D004400 ORTHO05D005479 2.2e-190 669.1 402 80.6
BraA09t36682Z Brassica rapa HOM05D004400 ORTHO05D005479 2.2e-190 669.1 402 80.6
CARHR105160 Cardamine hirsuta HOM05D004400 ORTHO05D005479 2.2e-190 669.1 402 80.1
LjContig00049g0014500 Lotus japonicus HOM05D004400 ORTHO05D005479 2.2e-190 669.1 396 81.6
Rhsim13G0215900 Rhododendron simsii HOM05D004400 ORTHO05D005479 2.2e-190 669.1 402 79.4
C09p12320 Brassica napus HOM05D004400 ORTHO05D005479 2.8e-190 668.7 402 80.3
BolC9t54125H Brassica oleracea HOM05D004400 ORTHO05D005479 2.8e-190 668.7 402 80.3
DCAR_002094 Daucus carota HOM05D004400 ORTHO05D005479 2.8e-190 668.7 402 79.1
MBI13_g29527_MAGBIO Magnolia biondii HOM05D004400 ORTHO05D005479 2.8e-190 668.7 402 79.6
FAN16G1059 Fragaria x ananassa HOM05D004400 ORTHO05D005479 3.7e-190 668.3 402 80.1
Manes.02G141600 Manihot esculenta HOM05D004400 ORTHO05D005479 3.7e-190 668.3 402 80.1
Psat4g095360 Pisum sativum HOM05D004400 ORTHO05D005479 3.7e-190 668.3 402 80.1
Actinidia16361 Actinidia chinensis HOM05D004400 ORTHO05D005479 8.2e-190 667.2 400 79.5
Haze_23202 Corylus avellana HOM05D004400 ORTHO05D005479 8.2e-190 667.2 402 80.1
Manes.01G181700 Manihot esculenta HOM05D004400 ORTHO05D005479 8.2e-190 667.2 402 79.6
Sp3g26830 Schrenkiella parvula HOM05D004400 ORTHO05D005479 1.1e-189 666.8 402 79.9
Aa31sc61G60 Aethionema arabicum HOM05D004400 ORTHO05D005479 1.4e-189 666.4 402 80.1
Thhalv10022711m.g Eutrema salsugineum HOM05D004400 ORTHO05D005479 1.4e-189 666.4 402 79.9
HanXRQChr12g0381201 Helianthus annuus HOM05D004400 ORTHO05D005479 1.4e-189 666.4 402 79.6
Phvul.006G029100 Phaseolus vulgaris HOM05D004400 ORTHO05D005479 1.4e-189 666.4 402 80.3
Duzib150G0360 Durio zibethinus HOM05D004400 ORTHO05D005479 1.8e-189 666.0 402 79.4
COL.COLO4_07229 Corchorus olitorius HOM05D004400 ORTHO05D005479 3.1e-189 665.2 402 79.4
Eucgr.B03720 Eucalyptus grandis HOM05D004400 ORTHO05D005479 3.1e-189 665.2 402 79.9
Potri.009G047700 Populus trichocarpa HOM05D004400 ORTHO05D005479 4.1e-189 664.8 402 79.9
AL3G45260 Arabidopsis lyrata HOM05D004400 ORTHO05D005479 5.3e-189 664.5 402 79.4
AT2G13360 Arabidopsis thaliana HOM05D004400 ORTHO05D005479 5.3e-189 664.5 402 79.1
Cfa009835 Carpinus fangiana HOM05D004400 ORTHO05D005479 5.3e-189 664.5 402 79.9
Gohir.A13G217500 Gossypium hirsutum HOM05D004400 ORTHO05D005479 5.3e-189 664.5 402 79.1
Atru.chr3.2806 Acer truncatum HOM05D004400 ORTHO05D005479 9.0e-189 663.7 402 79.4
BcaC01g03126 Brassica carinata HOM05D004400 ORTHO05D005479 9.0e-189 663.7 402 79.4
C03p55800 Brassica napus HOM05D004400 ORTHO05D005479 9.0e-189 663.7 402 79.4
BolC3t17861H Brassica oleracea HOM05D004400 ORTHO05D005479 9.0e-189 663.7 402 79.4
BcaB08g34528 Brassica carinata HOM05D004400 ORTHO05D005479 1.2e-188 663.3 402 79.4
Carub.0003s2789 Capsella rubella HOM05D004400 ORTHO05D005479 1.2e-188 663.3 402 79.4
DCAR_029980 Daucus carota HOM05D004400 ORTHO05D005479 1.2e-188 663.3 402 79.1
Nitab4.5_0001925g0250 Nicotiana tabacum HOM05D004400 ORTHO05D005479 1.2e-188 663.3 438 74.9
A03p44920 Brassica napus HOM05D004400 ORTHO05D005479 2.0e-188 662.5 402 79.1
BraA03t13629Z Brassica rapa HOM05D004400 ORTHO05D005479 2.0e-188 662.5 402 79.1
VMungo0540G1800 Vigna mungo HOM05D004400 ORTHO05D005479 2.0e-188 662.5 402 80.3
Hund21989 Selenicereus undatus HOM05D004400 ORTHO05D005479 2.6e-188 662.1 402 78.4
Lsat_1_v5_gn_5_64980 Lactuca sativa HOM05D004400 ORTHO05D005479 3.4e-188 661.8 402 78.6
Potri.001G253300 Populus trichocarpa HOM05D004400 ORTHO05D005479 3.8e-187 658.3 402 78.4
TAR623G1228 Trochodendron aralioides HOM05D004400 ORTHO05D005479 5.0e-187 657.9 402 78.6
Aqoxy2G00323 Aquilegia oxysepala HOM05D004400 ORTHO05D005479 6.5e-187 657.5 402 78.4
Sed0026623 Sechium edule HOM05D004400 ORTHO05D005479 1.1e-186 656.8 429 74.8
ECA233G2606 Erigeron canadensis HOM05D004400 ORTHO05D005479 4.2e-186 654.8 402 78.1
Lj3C181G6 Lonicera japonica HOM05D004400 ORTHO05D005479 9.4e-186 653.7 416 76.2
PSO384G2058 Papaver somniferum HOM05D004400 ORTHO05D005479 9.4e-186 653.7 402 77.9
arahy.Tifrunner.gnm1.ann1.NTNX6Y Arachis hypogaea HOM05D004400 ORTHO05D005479 1.6e-185 652.9 402 80.1
AUR62000174 Chenopodium quinoa HOM05D004400 ORTHO05D004881 1.6e-185 652.9 402 77.1
Lj3A187G31 Lonicera japonica HOM05D004400 ORTHO05D005479 2.7e-185 652.1 416 76.0
AUR62039836 Chenopodium quinoa HOM05D004400 ORTHO05D005479 3.6e-185 651.7 402 76.6
PSO339G5023 Papaver somniferum HOM05D004400 ORTHO05D005479 6.1e-185 651.0 402 77.6
Os08g0502700 Oryza sativa ssp. japonica HOM05D004400 ORTHO05D005479 1.4e-184 649.8 401 77.8
arahy.Tifrunner.gnm1.ann1.U6ZXMA Arachis hypogaea HOM05D004400 ORTHO05D005479 2.3e-184 649.0 419 77.6
Zm00001eb034260 Zea mays HOM05D004400 ORTHO05D005479 2.2e-182 642.5 402 76.1
Hund07449 Selenicereus undatus HOM05D004400 ORTHO05D005479 6.9e-181 637.5 402 76.6
SEGI_24220 Sequoiadendron giganteum HOM05D004400 ORTHO05D005479 5.0e-179 631.3 402 73.9
vmacro04009 Vaccinium macrocarpon HOM05D004400 ORTHO05D005479 9.4e-178 627.1 441 70.7
EL10Ac4g10172 Beta vulgaris HOM05D004400 ORTHO05D005479 3.6e-177 625.2 402 74.4
Sabra09G0035000 Salix brachista HOM05D004400 ORTHO05D004881 4.4e-175 618.2 402 75.6
GSVIVG01037237001 Vitis vinifera HOM05D004400 ORTHO05D005479 2.4e-173 612.5 375 78.4
Migut.N02365 Erythranthe guttata HOM05D004400 ORTHO05D005479 7.2e-170 600.9 361 80.9
Sabra16G0154200 Salix brachista HOM05D004400 ORTHO05D004881 8.8e-168 594.0 402 72.6
Medtr3g053890 Medicago truncatula HOM05D004400 ORTHO05D005479 2.0e-167 592.8 360 78.9
Sc09g0000960 Simmondsia chinensis HOM05D004400 ORTHO05D005479 2.2e-166 589.3 357 78.4
Mapoly0001s0436 Marchantia polymorpha HOM05D004400 ORTHO05D005479 3.5e-164 582.0 401 69.1
AagrBONN_evm.TU.Sc2ySwM_344.3612 Anthoceros agrestis HOM05D004400 ORTHO05D005479 2.5e-162 575.9 402 67.2
SMO228G0177 Selaginella moellendorffii HOM05D004400 ORTHO05D005479 7.2e-162 574.3 402 67.7
Pp3c21_12100 Physcomitrium patens HOM05D004400 ORTHO05D005479 6.1e-161 571.2 403 67.2
CDE08G1189 Ceratophyllum demersum HOM05D005522 ORTHO05D007414 1.0e-160 570.5 402 71.4
Pp3c18_8240 Physcomitrium patens HOM05D004400 ORTHO05D005479 4.0e-160 568.5 403 66.5
CBR_g39952 Chara braunii HOM05D004400 ORTHO05D005479 5.2e-160 568.2 402 66.9
SMO117G0208 Selaginella moellendorffii HOM05D004400 ORTHO05D005479 1.7e-158 563.1 402 65.7
Oeu061291.1 Olea europaea HOM05D004400 ORTHO05D005479 3.1e-157 558.9 340 79.4
Mapoly0066s0091 Marchantia polymorpha HOM05D004400 ORTHO05D005479 1.2e-156 557.0 401 64.8
TAR369G0837 Trochodendron aralioides HOM05D004400 ORTHO05D005479 6.5e-155 551.2 334 79.6
Medtr5g094410 Medicago truncatula HOM05D004400 ORTHO05D005479 5.5e-154 548.1 403 71.2
Peaxi162Scf00062g00919 Petunia axillaris HOM05D004400 ORTHO05D005479 5.5e-154 548.1 402 68.9
Pp3c1_24350 Physcomitrium patens HOM05D004400 ORTHO05D005479 6.1e-153 544.7 403 64.3
Medtr5g067370 Medicago truncatula HOM05D004400 ORTHO05D005479 3.0e-152 542.3 405 71.1
Dinv08771 Davidia involucrata HOM05D004400 ORTHO05D005479 9.8e-135 484.2 289 79.6
Sed0008818 Sechium edule HOM05D004400 ORTHO05D005479 5.4e-125 451.8 419 57.8
PRCOL_00005046 Prasinoderma coloniale HOM05D004400 ORTHO05D005479 9.2e-117 424.5 394 53.3
Zm00001eb034570 Zea mays HOM05D004400 ORTHO05D005479 7.8e-116 421.4 259 76.8
Cre01.g005150 Chlamydomonas reinhardtii HOM05D004400 ORTHO05D005479 1.5e-114 417.2 395 53.4
Psat5g194960 Pisum sativum HOM05D004400 ORTHO05D005479 3.5e-100 369.4 276 67.8
Zm00001eb034320 Zea mays HOM05D004400 ORTHO05D005479 7.9e-92 341.7 229 72.1
RcHm_v2.0_Chr2g0084601 Rosa chinensis HOM05D004400 ORTHO05D005479 5.8e-87 325.5 219 71.2
RcHm_v2.0_Chr2g0095031 Rosa chinensis HOM05D004400 ORTHO05D005479 5.8e-87 325.5 227 68.7
RcHm_v2.0_Chr5g0076081 Rosa chinensis HOM05D004400 ORTHO05D005479 4.9e-86 322.4 219 69.9
Pp3c10_5790 Physcomitrium patens HOM05D004400 ORTHO05D005479 1.6e-81 307.4 300 54.0
ClCG03G012880 Citrullus lanatus HOM05D004400 ORTHO05D005479 1.2e-71 274.6 163 80.4
Actinidia06950 Actinidia chinensis HOM05D004400 ORTHO05D005479 5.9e-71 272.3 160 81.2
Psat4g095320 Pisum sativum HOM05D004400 ORTHO05D005479 1.3e-49 201.4 116 82.8
Cfa022418 Carpinus fangiana HOM05D004400 ORTHO05D005479 7.0e-32 142.5 351 26.8
Cre06.g294650 Chlamydomonas reinhardtii HOM05D004400 ORTHO05D005479 7.3e-29 132.5 351 27.1
Ca_13794_v3 Cicer arietinum L. HOM05D004400 ORTHO05D004881 6.8e-27 125.9 86 70.9
Actinidia06949 Actinidia chinensis HOM05D004400 ORTHO05D005479 1.3e-14 85.1 47 80.9
Ah.08g223290 Amaranthus hybridus HOM05D004400 ORTHO05D005479 4.3e-13 80.1 45 75.6
CBR_g51244 Chara braunii HOM05D000019 ORTHO05D000353 9.5e-13 79.0 316 22.5
Pp3s34_610 Physcomitrium patens HOM05D000068 ORTHO05D011688 1.1e-08 65.5 302 23.5
Peaxi162Scf00234g00513 Petunia axillaris HOM05D004400 ORTHO05D306043 4.6e-07 60.1 72 45.8


User provided reference genes

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