Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_06214_v3 Cicer arietinum L. HOM05D004696 ORTHO05D005645 6.1e-103 377.5 189 100.0
Ca_05928_v3 Cicer arietinum L. HOM05D004696 ORTHO05D005645 6.5e-89 330.9 172 94.8
Psat7g133720 Pisum sativum HOM05D004696 ORTHO05D005645 4.1e-67 258.5 198 67.7
Psat1g042400 Pisum sativum HOM05D004696 ORTHO05D005645 3.9e-65 251.9 198 65.2
Medtr5g081850 Medicago truncatula HOM05D004696 ORTHO05D005645 6.6e-65 251.1 198 63.6
Lalb_Chr17g0338851 Lupinus albus HOM05D004696 ORTHO05D005645 1.6e-63 246.5 198 64.1
VMungo0331G1167 Vigna mungo HOM05D004696 ORTHO05D005645 2.3e-62 242.7 198 63.1
TPR.G8061 Trifolium pratense HOM05D004696 ORTHO05D005645 8.9e-62 240.7 199 61.8
Lalb_Chr10g0096421 Lupinus albus HOM05D004696 ORTHO05D005645 1.5e-61 240.0 198 63.6
Phvul.010G140500 Phaseolus vulgaris HOM05D004696 ORTHO05D005645 2.6e-61 239.2 198 62.1
arahy.Tifrunner.gnm1.ann1.09FGJA Arachis hypogaea HOM05D004696 ORTHO05D005645 5.8e-61 238.0 175 69.1
Glyma.01G218300 Glycine max HOM05D004696 ORTHO05D005645 5.8e-61 238.0 198 64.1
Glyma.11G024900 Glycine max HOM05D004696 ORTHO05D005645 1.7e-60 236.5 198 64.1
Lj2g0021207 Lotus japonicus HOM05D004696 ORTHO05D005645 2.9e-60 235.7 199 62.8
Phvul.003G045400 Phaseolus vulgaris HOM05D004696 ORTHO05D005645 6.4e-60 234.6 198 61.6
Lj4g0004970 Lotus japonicus HOM05D004696 ORTHO05D005645 3.9e-57 225.3 199 59.3
Glyma.14G125600 Glycine max HOM05D004696 ORTHO05D005645 8.6e-57 224.2 192 61.5
arahy.Tifrunner.gnm1.ann1.NQRV37 Arachis hypogaea HOM05D004696 ORTHO05D005645 5.6e-56 221.5 207 58.5
arahy.Tifrunner.gnm1.ann1.61U0KE Arachis hypogaea HOM05D004696 ORTHO05D005645 9.5e-56 220.7 207 57.5
arahy.Tifrunner.gnm1.ann1.BY2PXQ Arachis hypogaea HOM05D004696 ORTHO05D005645 1.2e-55 220.3 207 57.5
ClCG06G002080 Citrullus lanatus HOM05D004696 ORTHO05D005645 4.7e-55 218.4 172 59.9
Manes.11G020900 Manihot esculenta HOM05D004696 ORTHO05D005645 8.1e-55 217.6 199 57.8
Manes.03G211700 Manihot esculenta HOM05D004696 ORTHO05D005645 4.0e-54 215.3 200 57.5
QL06p014174 Quercus lobata HOM05D004696 ORTHO05D005645 2.0e-53 213.0 209 53.1
Cfa015727 Carpinus fangiana HOM05D004696 ORTHO05D005645 5.8e-53 211.5 199 55.3
Haze_00771 Corylus avellana HOM05D004696 ORTHO05D005645 2.2e-52 209.5 199 55.3
Lj6C700T16 Lonicera japonica HOM05D004696 ORTHO05D005645 2.9e-52 209.1 173 59.0
CsaV3_6G008150 Cucumis sativus L. HOM05D004696 ORTHO05D005645 6.4e-52 208.0 199 53.3
Cpa.g.sc146.25 Carica papaya HOM05D004696 ORTHO05D005645 1.1e-51 207.2 199 56.3
CiPaw.02G069300 Carya illinoinensis HOM05D004696 ORTHO05D005645 5.4e-51 204.9 199 53.3
Ciclev10005920m.g Citrus clementina HOM05D004696 ORTHO05D005645 2.1e-50 203.0 200 53.5
Sed0019137 Sechium edule HOM05D004696 ORTHO05D005645 1.0e-49 200.7 199 53.3
Sabra02G0114900 Salix brachista HOM05D004696 ORTHO05D005645 1.7e-49 199.9 197 55.3
Thecc.04G312600 Theobroma cacao HOM05D004696 ORTHO05D005645 3.0e-49 199.1 198 52.0
CANSAT78G0332 Cannabis sativa HOM05D004696 ORTHO05D005645 5.1e-49 198.4 198 53.5
MD13G1140700 Malus domestica HOM05D004696 ORTHO05D005645 5.1e-49 198.4 196 53.6
Lsat_1_v5_gn_1_39920 Lactuca sativa HOM05D004696 ORTHO05D005645 6.6e-49 198.0 199 52.3
Nitab4.5_0008086g0030 Nicotiana tabacum HOM05D004696 ORTHO05D005645 6.6e-49 198.0 189 54.5
Potri.008G206400 Populus trichocarpa HOM05D004696 ORTHO05D005645 6.6e-49 198.0 197 54.8
Peaxi162Scf00164g00414 Petunia axillaris HOM05D004696 ORTHO05D005645 8.6e-49 197.6 173 57.8
MD07G1065600 Malus domestica HOM05D004696 ORTHO05D005645 3.3e-48 195.7 196 52.6
Prupe.1G105700 Prunus persica HOM05D004696 ORTHO05D005645 3.3e-48 195.7 196 53.1
Sabra08G0150400 Salix brachista HOM05D004696 ORTHO05D005645 3.3e-48 195.7 217 50.7
CSS0007787 Camellia sinensis var. sinensis HOM05D004696 ORTHO05D005645 7.3e-48 194.5 200 51.5
PGR031G3538 Punica granatum HOM05D004696 ORTHO05D005645 7.3e-48 194.5 199 54.3
TWI73G0566 Tripterygium wilfordii HOM05D004696 ORTHO05D005645 7.3e-48 194.5 199 53.3
TWI09G0971 Tripterygium wilfordii HOM05D004696 ORTHO05D005645 1.6e-47 193.4 199 52.8
Gorai.005G071900 Gossypium raimondii HOM05D004696 ORTHO05D005645 4.7e-47 191.8 202 49.5
Ah.16g105210 Amaranthus hybridus HOM05D004696 ORTHO05D005645 8.1e-47 191.0 203 50.7
CAN.G305.38 Capsicum annuum HOM05D004696 ORTHO05D005645 8.1e-47 191.0 200 53.5
MD16G1136700 Malus domestica HOM05D004696 ORTHO05D005645 8.1e-47 191.0 196 53.1
Atru.chr4.3144 Acer truncatum HOM05D004696 ORTHO05D005645 1.1e-46 190.7 195 50.3
Solyc05g053220.3 Solanum lycopersicum HOM05D004696 ORTHO05D005645 1.4e-46 190.3 200 52.5
Sopen05g031730 Solanum pennellii HOM05D004696 ORTHO05D005645 1.4e-46 190.3 200 52.5
Dinv29511 Davidia involucrata HOM05D004696 ORTHO05D005645 2.4e-46 189.5 199 51.3
Gohir.A02G058200 Gossypium hirsutum HOM05D004696 ORTHO05D005645 2.4e-46 189.5 202 49.5
Ah.06g192450 Amaranthus hybridus HOM05D004696 ORTHO05D005645 3.1e-46 189.1 203 49.8
Duzib151G0078 Durio zibethinus HOM05D004696 ORTHO05D005645 3.1e-46 189.1 198 49.0
Gohir.D02G064000 Gossypium hirsutum HOM05D004696 ORTHO05D005645 4.0e-46 188.7 202 49.0
PGSC0003DMG400027150 Solanum tuberosum HOM05D004696 ORTHO05D005645 4.0e-46 188.7 200 52.0
HanXRQChr09g0238571 Helianthus annuus HOM05D004696 ORTHO05D005645 5.2e-46 188.3 199 50.8
Sabra02G0116500 Salix brachista HOM05D004696 ORTHO05D005645 5.2e-46 188.3 217 50.2
Actinidia01063 Actinidia chinensis HOM05D004696 ORTHO05D005645 8.9e-46 187.6 172 55.8
TAR629G2307 Trochodendron aralioides HOM05D004696 ORTHO05D005645 8.9e-46 187.6 199 51.8
Potri.010G002100 Populus trichocarpa HOM05D004696 ORTHO05D005645 1.5e-45 186.8 193 53.4
FvH4_4g21490 Fragaria vesca HOM05D004696 ORTHO05D005645 2.0e-45 186.4 196 53.6
FAN12G0616 Fragaria x ananassa HOM05D004696 ORTHO05D005645 2.0e-45 186.4 196 53.6
Dinv18020 Davidia involucrata HOM05D004696 ORTHO05D005645 2.6e-45 186.0 199 51.3
Eucgr.B03956 Eucalyptus grandis HOM05D004696 ORTHO05D005645 2.6e-45 186.0 200 50.0
Rhsim04G0248200 Rhododendron simsii HOM05D004696 ORTHO05D005645 2.6e-45 186.0 193 52.8
RcHm_v2.0_Chr4g0427441 Rosa chinensis HOM05D004696 ORTHO05D005645 4.4e-45 185.3 196 52.0
vmacro08011 Vaccinium macrocarpon HOM05D004696 ORTHO05D005645 4.4e-45 185.3 212 48.1
EL10Ac4g08571 Beta vulgaris HOM05D004696 ORTHO05D005645 5.8e-45 184.9 197 50.3
Lsat_1_v5_gn_6_92581 Lactuca sativa HOM05D004696 ORTHO05D005645 5.8e-45 184.9 199 50.3
SGA_v2.0_scaffold69G23291 Striga asiatica HOM05D004696 ORTHO05D005645 1.7e-44 183.3 175 54.3
Actinidia22921 Actinidia chinensis HOM05D004696 ORTHO05D005645 2.2e-44 183.0 198 49.0
FAN07G1680 Fragaria x ananassa HOM05D004696 ORTHO05D005645 2.2e-44 183.0 196 52.0
AUR62020507 Chenopodium quinoa HOM05D004696 ORTHO05D005645 6.4e-44 181.4 194 51.0
Sc17g0002920 Simmondsia chinensis HOM05D004696 ORTHO05D005645 6.4e-44 181.4 202 48.5
GSVIVG01017685001 Vitis vinifera HOM05D004696 ORTHO05D005645 6.4e-44 181.4 199 48.2
CDE06G2579 Ceratophyllum demersum HOM05D005139 ORTHO05D006125 1.4e-43 180.3 197 52.3
Aqoxy4G02417 Aquilegia oxysepala HOM05D004696 ORTHO05D005645 5.4e-43 178.3 198 48.5
Aqoxy5G04183 Aquilegia oxysepala HOM05D004696 ORTHO05D005645 9.2e-43 177.6 198 49.0
MELO3C035238.2 Cucumis melo HOM05D004696 ORTHO05D005645 7.8e-42 174.5 142 57.0
Os02g0730500 Oryza sativa ssp. japonica HOM05D004696 ORTHO05D005645 1.3e-41 173.7 198 48.5
ECA220G0002 Erigeron canadensis HOM05D004696 ORTHO05D005645 1.7e-41 173.3 186 51.1
MBI03_g01483_MAGBIO Magnolia biondii HOM05D004696 ORTHO05D005645 5.1e-41 171.8 185 50.8
THA.LOC104827108 Tarenaya hassleriana HOM05D004696 ORTHO05D005645 6.6e-41 171.4 192 46.9
AUR62015697 Chenopodium quinoa HOM05D004696 ORTHO05D005645 5.6e-40 168.3 185 48.6
Zm00001eb189970 Zea mays HOM05D004696 ORTHO05D005645 9.6e-40 167.5 197 46.7
Aa31LG2G12130 Aethionema arabicum HOM05D004696 ORTHO05D005645 2.1e-39 166.4 186 49.5
MSTRG.24614 Avicennia marina HOM05D004696 ORTHO05D005645 3.6e-39 165.6 185 48.1
Migut.N00002 Erythranthe guttata HOM05D004696 ORTHO05D005645 1.4e-38 163.7 197 46.2
Nitab4.5_0000745g0120 Nicotiana tabacum HOM05D004696 ORTHO05D005645 2.4e-38 162.9 173 52.0
Cc03_g00150 Coffea canephora HOM05D004696 ORTHO05D005645 5.3e-38 161.8 210 42.4
SalBow2G0725 Salvia bowleyana HOM05D001196 ORTHO05D005911 6.9e-38 161.4 197 46.2
CARHR185500 Cardamine hirsuta HOM05D004696 ORTHO05D005645 1.5e-37 160.2 195 45.1
AL6G41010 Arabidopsis lyrata HOM05D004696 ORTHO05D005645 2.0e-37 159.8 199 45.7
AT5G30495 Arabidopsis thaliana HOM05D004696 ORTHO05D005645 5.8e-37 158.3 199 44.2
SGA_v2.0_scaffold49G18399 Striga asiatica HOM05D004696 ORTHO05D005645 5.8e-37 158.3 194 45.4
Cc00_g15640 Coffea canephora HOM05D004696 ORTHO05D005645 9.9e-37 157.5 215 43.7
Thhalv10005420m.g Eutrema salsugineum HOM05D004696 ORTHO05D005645 1.7e-36 156.8 196 44.9
Aqoxy3G02973 Aquilegia oxysepala HOM05D004696 ORTHO05D005645 6.4e-36 154.8 158 52.5
Carub.0002s0865 Capsella rubella HOM05D004696 ORTHO05D005645 5.4e-35 151.8 193 45.1
PSO832G1751 Papaver somniferum HOM05D004696 ORTHO05D005645 5.4e-35 151.8 201 45.8
unitig_8.g2889 Utricularia gibba HOM05D004696 ORTHO05D005645 1.6e-34 150.2 186 43.0
Hma1.2p1_2234F.1_g317690 Hydrangea macrophylla HOM05D004696 ORTHO05D000003 2.7e-34 149.4 262 36.3
BcaC04g23715 Brassica carinata HOM05D004696 ORTHO05D005645 6.0e-34 148.3 199 42.7
PSO063G5897 Papaver somniferum HOM05D004696 ORTHO05D005645 6.0e-34 148.3 198 44.9
Sp2g19960 Schrenkiella parvula HOM05D004696 ORTHO05D005645 6.0e-34 148.3 198 42.9
Oeu022705.1 Olea europaea HOM05D004696 ORTHO05D005645 7.8e-34 147.9 182 46.2
BcaB04g19639 Brassica carinata HOM05D004696 ORTHO05D005645 1.7e-33 146.7 195 42.1
AT1G54770 Arabidopsis thaliana HOM05D004696 ORTHO05D005645 8.7e-33 144.4 199 44.7
BraA09t36143Z Brassica rapa HOM05D004696 ORTHO05D005645 8.7e-33 144.4 197 42.6
BolC9t53474H Brassica oleracea HOM05D004696 ORTHO05D005645 1.5e-32 143.7 196 40.8
C09p05450 Brassica napus HOM05D004696 ORTHO05D005645 1.9e-32 143.3 196 40.8
A09p05040 Brassica napus HOM05D004696 ORTHO05D005645 2.5e-32 142.9 197 42.1
PSO478G3068 Papaver somniferum HOM05D004696 ORTHO05D005645 3.6e-31 139.0 192 41.7
Oeu037627.2 Olea europaea HOM05D004696 ORTHO05D005645 4.8e-31 138.7 300 33.0
PSO782G4648 Papaver somniferum HOM05D004696 ORTHO05D005645 4.8e-31 138.7 194 40.7
Mapoly0084s0020 Marchantia polymorpha HOM05D004696 ORTHO05D005645 1.4e-27 127.1 175 41.1
Nn3g16891 Nelumbo nucifera HOM05D004696 ORTHO05D005645 3.9e-25 119.0 118 48.3
SHI04008 Sapria himalayana HOM05D004696 ORTHO05D005645 6.7e-25 118.2 161 41.0
Pp3c7_450 Physcomitrium patens HOM05D004696 ORTHO05D005645 4.3e-24 115.5 192 37.5
ECA248G3148 Erigeron canadensis HOM05D004696 ORTHO05D005645 3.7e-23 112.5 192 39.6
SEGI_16783 Sequoiadendron giganteum HOM05D004696 ORTHO05D005645 3.7e-23 112.5 170 40.0
SEGI_41631 Sequoiadendron giganteum HOM05D004696 ORTHO05D005645 6.2e-23 111.7 188 37.8
SMO139G0013 Selaginella moellendorffii HOM05D004696 ORTHO05D005645 1.1e-22 110.9 182 37.4
COL.COLO4_34519 Corchorus olitorius HOM05D004696 ORTHO05D005645 1.4e-22 110.5 91 60.4
Lj4g0014561 Lotus japonicus HOM05D004696 ORTHO05D005645 2.4e-22 109.8 78 69.2
Lj4g0016234 Lotus japonicus HOM05D004696 ORTHO05D005645 2.4e-22 109.8 78 69.2
CSS0046364 Camellia sinensis var. sinensis HOM05D004696 ORTHO05D005645 6.9e-22 108.2 101 50.5
RcHm_v2.0_Chr4g0427481 Rosa chinensis HOM05D004696 ORTHO05D005645 9.0e-22 107.8 103 51.5
CSS0022818 Camellia sinensis var. sinensis HOM05D004696 ORTHO05D005645 1.7e-20 103.6 101 48.5
Lj2g0010517 Lotus japonicus HOM05D004696 ORTHO05D005645 1.6e-18 97.1 125 45.6
CBR_g41139 Chara braunii HOM05D004696 ORTHO05D005645 2.1e-18 96.7 165 34.5
HPP92_006011 Vanilla planifolia HOM05D004696 ORTHO05D005645 8.7e-17 91.3 104 41.3
Zm00001eb253530 Zea mays HOM05D004696 ORTHO05D005645 2.5e-16 89.7 77 57.1
ECA149G0001 Erigeron canadensis HOM05D004696 ORTHO05D005645 3.3e-16 89.4 182 39.0
ATR1127G170 Amborella trichopoda HOM05D004696 ORTHO05D005645 7.4e-16 88.2 114 40.4
MCO05G434 Micromonas commoda HOM05D004696 ORTHO05D005645 7.6e-13 78.2 153 34.6
TAR371G0358 Trochodendron aralioides HOM05D004696 ORTHO05D005645 2.1e-10 70.1 60 61.7
PRCOL_00000839 Prasinoderma coloniale HOM05D004696 ORTHO05D005645 5.1e-09 65.5 142 30.3
AagrBONN_evm.TU.Sc2ySwM_368.1627 Anthoceros agrestis HOM05D004696 ORTHO05D005645 8.7e-09 64.7 125 30.4
Aqoxy5G04095 Aquilegia oxysepala HOM05D004696 ORTHO05D005645 1.9e-08 63.5 70 54.3
BcaC04g19932 Brassica carinata HOM05D004696 ORTHO05D005645 7.4e-08 61.6 107 32.7
BolC9t57816H Brassica oleracea HOM05D004696 ORTHO05D005645 1.3e-07 60.8 107 33.6
Lj2g0009432 Lotus japonicus HOM05D004696 ORTHO05D005645 4.8e-07 58.9 67 46.3


User provided reference genes

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