Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_06199_v3 Cicer arietinum L. HOM05D006179 ORTHO05D008370 1.5e-132 476.1 231 100.0
Medtr5g089330 Medicago truncatula HOM05D006179 ORTHO05D008370 1.0e-112 410.2 227 86.3
TPR.G16411 Trifolium pratense HOM05D006179 ORTHO05D008370 1.4e-112 409.8 218 88.5
LjContig00564g0004002 Lotus japonicus HOM05D006179 ORTHO05D008370 2.3e-112 409.1 227 84.6
Psat2g020720 Pisum sativum HOM05D006179 ORTHO05D008370 2.2e-110 402.5 227 84.1
Glyma.02G279000 Glycine max HOM05D006179 ORTHO05D008370 3.7e-110 401.7 228 83.8
Glyma.14G035700 Glycine max HOM05D006179 ORTHO05D008370 3.7e-110 401.7 228 82.9
Lalb_Chr04g0249261 Lupinus albus HOM05D006179 ORTHO05D008370 3.4e-108 395.2 230 81.7
arahy.Tifrunner.gnm1.ann1.66DN5N Arachis hypogaea HOM05D006179 ORTHO05D008370 7.7e-108 394.0 223 83.9
VMungo0647G1137 Vigna mungo HOM05D006179 ORTHO05D008370 1.0e-107 393.7 227 81.9
Phvul.008G201800 Phaseolus vulgaris HOM05D006179 ORTHO05D008370 1.7e-107 392.9 227 81.5
TPR.G16393 Trifolium pratense HOM05D006179 ORTHO05D008370 6.5e-107 391.0 230 80.4
arahy.Tifrunner.gnm1.ann1.0RM1GA Arachis hypogaea HOM05D006179 ORTHO05D008370 5.5e-106 387.9 229 81.7
PGSC0003DMG401004716 Solanum tuberosum HOM05D006179 ORTHO05D008370 2.7e-105 385.6 230 78.3
Hma1.2p1_0470F.1_g159226 Hydrangea macrophylla HOM05D006179 ORTHO05D008370 1.4e-104 383.3 227 78.4
Gohir.A07G121100 Gossypium hirsutum HOM05D006179 ORTHO05D008370 3.0e-104 382.1 230 77.8
Sopen12g034430 Solanum pennellii HOM05D006179 ORTHO05D008370 3.9e-104 381.7 230 77.8
Gohir.D07G125300 Gossypium hirsutum HOM05D006179 ORTHO05D008370 6.7e-104 380.9 230 77.4
Solyc12g099800.2 Solanum lycopersicum HOM05D006179 ORTHO05D008370 1.1e-103 380.2 230 77.0
Cfa009884 Carpinus fangiana HOM05D006179 ORTHO05D008370 2.6e-103 379.0 231 76.6
COL.COLO4_24491 Corchorus olitorius HOM05D006179 ORTHO05D008370 3.3e-103 378.6 227 78.0
Atru.chr3.2957 Acer truncatum HOM05D006179 ORTHO05D008370 9.7e-103 377.1 218 78.4
Potri.009G069300 Populus trichocarpa HOM05D006179 ORTHO05D008370 1.7e-102 376.3 219 80.4
PGR119G2402 Punica granatum HOM05D006179 ORTHO05D008370 2.2e-102 375.9 226 77.4
PSO384G2846 Papaver somniferum HOM05D006179 ORTHO05D008370 4.8e-102 374.8 221 77.4
Nitab4.5_0001290g0120 Nicotiana tabacum HOM05D006179 ORTHO05D008370 8.2e-102 374.0 224 79.0
GSVIVG01037292001 Vitis vinifera HOM05D006179 ORTHO05D008370 1.4e-101 373.2 218 78.4
PSO339G0647 Papaver somniferum HOM05D006179 ORTHO05D008370 2.4e-101 372.5 221 76.9
CiPaw.14G111900 Carya illinoinensis HOM05D006179 ORTHO05D008370 5.3e-101 371.3 231 76.6
Prupe.4G263800 Prunus persica HOM05D006179 ORTHO05D008370 1.2e-100 370.2 212 79.2
CSS0020940 Camellia sinensis var. sinensis HOM05D006179 ORTHO05D008370 2.0e-100 369.4 226 77.4
ClCG02G022800 Citrullus lanatus HOM05D006179 ORTHO05D008370 2.6e-100 369.0 241 72.6
HanXRQChr13g0390131 Helianthus annuus HOM05D006179 ORTHO05D008370 3.5e-100 368.6 229 76.0
MD11G1184200 Malus domestica HOM05D006179 ORTHO05D008370 4.5e-100 368.2 227 75.8
SalBow6G4024 Salvia bowleyana HOM05D006179 ORTHO05D008370 4.5e-100 368.2 225 78.2
Migut.D00669 Erythranthe guttata HOM05D006179 ORTHO05D008370 1.0e-99 367.1 227 78.9
QL01p016926 Quercus lobata HOM05D006179 ORTHO05D008370 1.7e-99 366.3 229 74.2
CANSAT54G1770 Cannabis sativa HOM05D006179 ORTHO05D008370 1.1e-98 363.6 210 78.1
Haze_23248 Corylus avellana HOM05D006179 ORTHO05D008370 1.1e-98 363.6 266 65.4
Oeu061700.1 Olea europaea HOM05D006179 ORTHO05D008370 1.1e-98 363.6 225 77.3
SGA_v2.0_scaffold8G04541 Striga asiatica HOM05D006179 ORTHO05D008370 1.1e-98 363.6 227 76.2
TWI31G1173 Tripterygium wilfordii HOM05D006179 ORTHO05D008370 1.1e-98 363.6 210 81.0
TAR623G0610 Trochodendron aralioides HOM05D006179 ORTHO05D008370 1.5e-98 363.2 230 74.3
Gorai.001G135100 Gossypium raimondii HOM05D006179 ORTHO05D008370 1.9e-98 362.8 219 77.2
Cc00_g17410 Coffea canephora HOM05D006179 ORTHO05D008370 2.5e-98 362.5 230 74.8
Sed0005347 Sechium edule HOM05D006179 ORTHO05D008370 3.2e-98 362.1 227 74.9
Hund21973 Selenicereus undatus HOM05D006179 ORTHO05D008370 3.2e-98 362.1 230 72.6
EL10Ac4g10106 Beta vulgaris HOM05D006179 ORTHO05D008370 4.2e-98 361.7 218 75.2
Lj2C622G16 Lonicera japonica HOM05D006179 ORTHO05D008370 9.4e-98 360.5 269 66.2
Rhsim01G0195300 Rhododendron simsii HOM05D006179 ORTHO05D008370 9.4e-98 360.5 239 72.0
vmacro14276 Vaccinium macrocarpon HOM05D006179 ORTHO05D008370 1.2e-97 360.1 226 74.3
Ah.04g159740 Amaranthus hybridus HOM05D006179 ORTHO05D008370 1.6e-97 359.8 222 75.7
Nn2g14782 Nelumbo nucifera HOM05D006179 ORTHO05D008370 1.6e-97 359.8 209 78.5
RcHm_v2.0_Chr5g0050451 Rosa chinensis HOM05D006179 ORTHO05D008370 1.6e-97 359.8 230 73.5
Aqoxy1G00395 Aquilegia oxysepala HOM05D006179 ORTHO05D008370 2.7e-97 359.0 218 73.9
AUR62000204 Chenopodium quinoa HOM05D006179 ORTHO05D008370 2.7e-97 359.0 218 74.3
FvH4_3g27810 Fragaria vesca HOM05D006179 ORTHO05D008370 3.6e-97 358.6 230 73.0
TWI79G0794 Tripterygium wilfordii HOM05D006179 ORTHO05D008370 4.7e-97 358.2 230 75.2
FAN25G1664 Fragaria x ananassa HOM05D006179 ORTHO05D008370 1.8e-96 356.3 230 73.0
Sabra09G0052200 Salix brachista HOM05D006179 ORTHO05D008370 6.7e-96 354.4 263 66.5
CAN.G1305.17 Capsicum annuum HOM05D006179 ORTHO05D008370 2.6e-95 352.4 227 73.1
CDE02G1620 Ceratophyllum demersum HOM05D006179 ORTHO05D008370 5.7e-95 351.3 209 78.5
Sc16g0011000 Simmondsia chinensis HOM05D006179 ORTHO05D008370 5.7e-95 351.3 218 74.3
ATR0621G006 Amborella trichopoda HOM05D006179 ORTHO05D008370 7.5e-95 350.9 218 74.3
Os07g0687500 Oryza sativa ssp. japonica HOM05D006179 ORTHO05D008370 9.7e-95 350.5 212 76.4
Peaxi162Scf00272g00828 Petunia axillaris HOM05D006179 ORTHO05D008370 9.7e-95 350.5 201 79.6
AUR62006552 Chenopodium quinoa HOM05D006179 ORTHO05D008370 1.3e-94 350.1 229 70.3
Thecc.09G246900 Theobroma cacao HOM05D006179 ORTHO05D008370 4.8e-94 348.2 265 64.2
Zm00001eb331180 Zea mays HOM05D006179 ORTHO05D008370 1.8e-93 346.3 211 75.4
unitig_62.g23875 Utricularia gibba HOM05D006179 ORTHO05D008370 9.1e-93 344.0 209 76.1
Cpa.g.sc157.57 Carica papaya HOM05D006179 ORTHO05D008370 2.7e-92 342.4 218 72.9
Nn7g36750 Nelumbo nucifera HOM05D006179 ORTHO05D008370 1.3e-91 340.1 231 70.1
Atru.chr3.2952 Acer truncatum HOM05D006179 ORTHO05D008370 3.6e-89 332.0 191 80.1
Duzib170G0239 Durio zibethinus HOM05D006179 ORTHO05D008370 1.8e-88 329.7 212 75.0
Aa31LG1G8830 Aethionema arabicum HOM05D006179 ORTHO05D008370 4.0e-88 328.6 209 74.2
DCAR_024400 Daucus carota HOM05D006179 ORTHO05D008370 2.6e-87 325.9 222 70.7
Thhalv10014227m.g Eutrema salsugineum HOM05D006179 ORTHO05D008370 2.6e-87 325.9 226 69.5
CARHR193590 Cardamine hirsuta HOM05D006179 ORTHO05D008370 4.4e-87 325.1 226 69.0
Lsat_1_v5_gn_5_65341 Lactuca sativa HOM05D006179 ORTHO05D008370 4.4e-87 325.1 226 69.5
FAN21G1036 Fragaria x ananassa HOM05D006179 ORTHO05D008370 3.7e-86 322.0 247 65.2
BolC3t13573H Brassica oleracea HOM05D006179 ORTHO05D008370 1.1e-85 320.5 227 68.3
C03p11040 Brassica napus HOM05D006179 ORTHO05D008370 2.4e-85 319.3 227 67.8
FAN11G2659 Fragaria x ananassa HOM05D000059 ORTHO05D008370 3.1e-85 318.9 203 74.9
A03p09460 Brassica napus HOM05D006179 ORTHO05D008370 1.2e-84 317.0 226 68.1
BraA03t10264Z Brassica rapa HOM05D006179 ORTHO05D008370 1.2e-84 317.0 226 68.1
Sp6g25040 Schrenkiella parvula HOM05D006179 ORTHO05D008370 1.2e-84 317.0 227 68.3
BcaB01g04864 Brassica carinata HOM05D006179 ORTHO05D008370 2.0e-84 316.2 209 71.3
AL6G30860 Arabidopsis lyrata HOM05D006179 ORTHO05D008370 7.7e-84 314.3 227 67.0
THA.LOC104811194 Tarenaya hassleriana HOM05D006179 ORTHO05D008370 7.7e-84 314.3 209 70.3
AT5G19370 Arabidopsis thaliana HOM05D006179 ORTHO05D008370 1.0e-83 313.9 230 65.7
Nitab4.5_0002310g0120 Nicotiana tabacum HOM05D006179 ORTHO05D008370 1.1e-82 310.5 227 68.3
A02p05510 Brassica napus HOM05D006179 ORTHO05D008370 1.5e-82 310.1 227 65.6
Carub.0006s1771 Capsella rubella HOM05D006179 ORTHO05D008370 1.9e-82 309.7 227 65.6
BcaC03g13669 Brassica carinata HOM05D006179 ORTHO05D008370 3.3e-82 308.9 227 65.2
HPP92_028459 Vanilla planifolia HOM05D006179 ORTHO05D008370 5.5e-82 308.1 182 75.8
MELO3C014557.2 Cucumis melo HOM05D006179 ORTHO05D008370 2.3e-80 302.8 205 72.2
BraA02t05502Z Brassica rapa HOM05D006179 ORTHO05D008370 1.5e-79 300.1 251 59.0
Mapoly0003s0043 Marchantia polymorpha HOM05D006179 ORTHO05D008370 9.8e-79 297.4 238 58.8
SMO145G0007 Selaginella moellendorffii HOM05D006179 ORTHO05D008370 8.3e-78 294.3 219 63.5
BNapus_Darmor_BZH_scaffold_38p02550 Brassica napus HOM05D006179 ORTHO05D008370 4.1e-77 292.0 216 64.8
CsaV3_6G038930 Cucumis sativus L. HOM05D006179 ORTHO05D008370 2.7e-76 289.3 186 76.3
Pp3c3_13280 Physcomitrium patens HOM05D006179 ORTHO05D008370 8.6e-75 284.3 212 63.2
BcaB01g05143 Brassica carinata HOM05D006179 ORTHO05D008370 9.5e-74 280.8 179 73.2
AagrBONN_evm.TU.Sc2ySwM_117.3174 Anthoceros agrestis HOM05D006179 ORTHO05D008370 7.5e-71 271.2 222 59.0
Eucgr.J00687 Eucalyptus grandis HOM05D006179 ORTHO05D008370 3.7e-70 268.9 151 78.8
Ciclev10017644m.g Citrus clementina HOM05D006179 ORTHO05D008370 1.4e-69 266.9 151 77.5
CBR_g54969 Chara braunii HOM05D006179 ORTHO05D008370 1.1e-66 257.3 220 57.3
ECA233G4787 Erigeron canadensis HOM05D006179 ORTHO05D008370 1.7e-62 243.4 141 78.7
Dinv36157 Davidia involucrata HOM05D006179 ORTHO05D008370 1.1e-61 240.7 147 79.6
Manes.02G138400 Manihot esculenta HOM05D006179 ORTHO05D008370 8.6e-59 231.1 147 76.9
Peaxi162Scf00174g00223 Petunia axillaris HOM05D006179 ORTHO05D008370 1.2e-57 227.3 196 59.2
AUR62040469 Chenopodium quinoa HOM05D006179 ORTHO05D008370 2.9e-54 216.1 150 68.0
SEGI_16296 Sequoiadendron giganteum HOM05D006179 ORTHO05D008370 2.9e-54 216.1 153 66.0
Hund21974 Selenicereus undatus HOM05D006179 ORTHO05D008240 6.4e-54 214.9 150 70.0
AUR62037598 Chenopodium quinoa HOM05D006179 ORTHO05D007344 7.6e-47 191.4 138 68.1
AUR62042212 Chenopodium quinoa HOM05D006179 ORTHO05D008370 3.6e-41 172.6 146 60.3
Cre07.g350400 Chlamydomonas reinhardtii HOM05D006179 ORTHO05D008370 1.2e-36 157.5 178 38.2
MCO13G336 Micromonas commoda HOM05D006179 ORTHO05D008370 6.2e-33 145.2 202 39.1
SalBow6G2129 Salvia bowleyana HOM05D006179 ORTHO05D353266 4.5e-31 139.0 152 55.9
CSS0040024 Camellia sinensis var. sinensis HOM05D006179 ORTHO05D008370 1.9e-21 107.1 62 80.6
CSS0040434 Camellia sinensis var. sinensis HOM05D006179 ORTHO05D008370 6.7e-19 98.6 137 43.8
MD03G1195100 Malus domestica HOM05D004980 ORTHO05D006505 2.2e-09 67.0 124 33.9
MD11G1211400 Malus domestica HOM05D004980 ORTHO05D006505 2.2e-09 67.0 124 33.1
MCO16G521 Micromonas commoda HOM05D005637 ORTHO05D006983 6.3e-09 65.5 110 41.8
Haze_26617 Corylus avellana HOM05D006179 ORTHO05D164269 1.1e-08 64.7 143 34.3
TWI38G2207 Tripterygium wilfordii HOM05D004980 ORTHO05D006505 1.1e-08 64.7 101 35.6
CSS0002819 Camellia sinensis var. sinensis HOM05D004980 ORTHO05D006505 4.1e-08 62.8 100 35.0
Prupe.4G221100 Prunus persica HOM05D004980 ORTHO05D006505 5.3e-08 62.4 114 33.3
LjContig00272g0012473 Lotus japonicus HOM05D004980 ORTHO05D006505 6.9e-08 62.0 97 35.1
CANSAT11G1616 Cannabis sativa HOM05D004980 ORTHO05D006505 9.0e-08 61.6 99 34.3
Ca_06343_v3 Cicer arietinum L. HOM05D004980 ORTHO05D006505 9.0e-08 61.6 102 35.3
Manes.03G132700 Manihot esculenta HOM05D004980 ORTHO05D006505 9.0e-08 61.6 101 33.7
QL02p019212 Quercus lobata HOM05D006179 ORTHO05D008370 9.0e-08 61.6 35 68.6
Sabra16G0233900 Salix brachista HOM05D004980 ORTHO05D006505 1.2e-07 61.2 105 35.2
VMungo0647G0060 Vigna mungo HOM05D004980 ORTHO05D006505 1.2e-07 61.2 100 35.0
arahy.Tifrunner.gnm1.ann1.C5REQA Arachis hypogaea HOM05D004980 ORTHO05D006505 1.5e-07 60.8 100 33.0
BraA02t06050Z Brassica rapa HOM05D004980 ORTHO05D006505 1.5e-07 60.8 144 29.9
Cpa.g.sc12.256 Carica papaya HOM05D004980 ORTHO05D006505 1.5e-07 60.8 101 32.7
Psat2g012600 Pisum sativum HOM05D004980 ORTHO05D006505 1.5e-07 60.8 95 33.7
Lalb_Chr17g0348661 Lupinus albus HOM05D004980 ORTHO05D006505 2.6e-07 60.1 102 33.3
TAR624G0219 Trochodendron aralioides HOM05D004980 ORTHO05D006505 2.6e-07 60.1 101 32.7
TAR626G1444 Trochodendron aralioides HOM05D004980 ORTHO05D006505 2.6e-07 60.1 114 31.6
Dinv40789 Davidia involucrata HOM05D004980 ORTHO05D006505 3.4e-07 59.7 101 31.7
TPR.G1188 Trifolium pratense HOM05D004980 ORTHO05D006505 3.4e-07 59.7 101 31.7
Haze_09726 Corylus avellana HOM05D004980 ORTHO05D006505 4.5e-07 59.3 101 32.7
Migut.N00646 Erythranthe guttata HOM05D004980 ORTHO05D006505 4.5e-07 59.3 118 30.5
Potri.001G355800 Populus trichocarpa HOM05D004980 ORTHO05D006505 4.5e-07 59.3 101 35.6
Medtr5g093580 Medicago truncatula HOM05D004980 ORTHO05D006505 5.9e-07 58.9 102 31.4
TPR.G4803 Trifolium pratense HOM05D004980 ORTHO05D006505 5.9e-07 58.9 101 34.7
Eucgr.F00711 Eucalyptus grandis HOM05D004980 ORTHO05D006505 7.7e-07 58.5 95 34.7
FAN16G1125 Fragaria x ananassa HOM05D004980 ORTHO05D006505 7.7e-07 58.5 101 34.7
Actinidia05071 Actinidia chinensis HOM05D004980 ORTHO05D006505 1.0e-06 58.2 98 33.7
CiPaw.12G132600 Carya illinoinensis HOM05D004980 ORTHO05D006505 1.0e-06 58.2 101 31.7
CsaV3_3G004900 Cucumis sativus L. HOM05D004980 ORTHO05D006505 1.0e-06 58.2 98 30.6
arahy.Tifrunner.gnm1.ann1.45FXM1 Arachis hypogaea HOM05D004980 ORTHO05D006505 1.3e-06 57.8 101 31.7
HanXRQChr05g0159781 Helianthus annuus HOM05D004980 ORTHO05D006505 1.3e-06 57.8 101 32.7
Phvul.008G270700 Phaseolus vulgaris HOM05D004980 ORTHO05D006505 1.3e-06 57.8 102 35.3
RcHm_v2.0_Chr5g0041141 Rosa chinensis HOM05D004980 ORTHO05D006505 1.3e-06 57.8 97 37.1
Sed0026676 Sechium edule HOM05D004980 ORTHO05D006505 1.3e-06 57.8 102 30.4
Ah.06g182490 Amaranthus hybridus HOM05D004980 ORTHO05D006505 1.7e-06 57.4 104 33.7
Cfa020293 Carpinus fangiana HOM05D004980 ORTHO05D006505 1.7e-06 57.4 101 32.7
Ciclev10008197m.g Citrus clementina HOM05D004980 ORTHO05D006505 1.7e-06 57.4 101 32.7
FvH4_3g23360 Fragaria vesca HOM05D004980 ORTHO05D006505 1.7e-06 57.4 110 32.7
FAN11G2764 Fragaria x ananassa HOM05D004980 ORTHO05D006505 1.7e-06 57.4 110 32.7
FAN21G0499 Fragaria x ananassa HOM05D004980 ORTHO05D006505 1.7e-06 57.4 97 34.0
FAN25G0097 Fragaria x ananassa HOM05D004980 ORTHO05D006505 1.7e-06 57.4 97 34.0
Aqoxy1G02957 Aquilegia oxysepala HOM05D004980 ORTHO05D006505 2.2e-06 57.0 100 32.0
Glyma.02G293600 Glycine max HOM05D004980 ORTHO05D006505 2.2e-06 57.0 101 31.7
PSO675G8833 Papaver somniferum HOM05D004980 ORTHO05D006505 2.2e-06 57.0 101 32.7
GSVIVG01037705001 Vitis vinifera HOM05D004980 ORTHO05D006505 2.2e-06 57.0 100 32.0
vmacro22325 Vaccinium macrocarpon HOM05D004980 ORTHO05D006505 2.9e-06 56.6 99 31.3
AUR62015838 Chenopodium quinoa HOM05D004980 ORTHO05D006505 3.8e-06 56.2 98 32.7
AUR62020381 Chenopodium quinoa HOM05D004980 ORTHO05D006505 3.8e-06 56.2 98 32.7
ClCG10G005220 Citrullus lanatus HOM05D004980 ORTHO05D006505 3.8e-06 56.2 106 30.2
MELO3C014186.2 Cucumis melo HOM05D004980 ORTHO05D006505 3.8e-06 56.2 118 28.0
Lju1319A3G37 Lonicera japonica HOM05D004980 ORTHO05D006505 3.8e-06 56.2 103 31.1
Nn3g21061 Nelumbo nucifera HOM05D004980 ORTHO05D006505 3.8e-06 56.2 101 31.7
Thecc.07G030400 Theobroma cacao HOM05D004980 ORTHO05D006505 3.8e-06 56.2 99 30.3
BcaB08g35877 Brassica carinata HOM05D004980 ORTHO05D006505 5.0e-06 55.8 106 31.1
Gohir.D05G373600 Gossypium hirsutum HOM05D004980 ORTHO05D006505 5.0e-06 55.8 98 30.6
Carub.0008s1543 Capsella rubella HOM05D004980 ORTHO05D006505 6.5e-06 55.5 102 31.4
Gohir.1Z049437 Gossypium hirsutum HOM05D004980 ORTHO05D006505 6.5e-06 55.5 98 30.6
Gohir.A01G052750 Gossypium hirsutum HOM05D004980 ORTHO05D006505 6.5e-06 55.5 98 30.6
Gorai.009G442300 Gossypium raimondii HOM05D004980 ORTHO05D006505 6.5e-06 55.5 98 30.6
AL8G30640 Arabidopsis lyrata HOM05D004980 ORTHO05D006505 8.5e-06 55.1 106 30.2
PGR083G1712 Punica granatum HOM05D004980 ORTHO05D006505 8.5e-06 55.1 97 35.1
Sc16g0005820 Simmondsia chinensis HOM05D004980 ORTHO05D006505 8.5e-06 55.1 98 31.6


User provided reference genes

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