Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_06188_v3 Cicer arietinum L. HOM05D004500 ORTHO05D005775 0.0e+00 3475.3 1808 100.0
TPR.G16395 Trifolium pratense HOM05D004500 ORTHO05D005775 0.0e+00 3259.9 1809 92.9
Medtr5g089000 Medicago truncatula HOM05D004500 ORTHO05D005775 0.0e+00 3216.8 1806 91.9
Psat0s2305g0080 Pisum sativum HOM05D004500 ORTHO05D005775 0.0e+00 3072.3 1788 89.4
Glyma.14G036800 Glycine max HOM05D004500 ORTHO05D005775 0.0e+00 3050.8 1809 87.1
Lalb_Chr10g0106121 Lupinus albus HOM05D004500 ORTHO05D005775 0.0e+00 3018.0 1815 86.2
LjContig00564g0025272 Lotus japonicus HOM05D004500 ORTHO05D005775 0.0e+00 2996.8 1801 86.2
Phvul.008G203200 Phaseolus vulgaris HOM05D004500 ORTHO05D005775 0.0e+00 2967.9 1811 85.1
arahy.Tifrunner.gnm1.ann1.G3VBDM Arachis hypogaea HOM05D004500 ORTHO05D005775 0.0e+00 2941.0 1812 83.6
arahy.Tifrunner.gnm1.ann1.VEQ9JC Arachis hypogaea HOM05D004500 ORTHO05D005775 0.0e+00 2940.2 1809 83.7
Cfa009915 Carpinus fangiana HOM05D004500 ORTHO05D005775 0.0e+00 2624.0 1817 74.6
QL01p016442 Quercus lobata HOM05D004500 ORTHO05D005775 0.0e+00 2555.4 1869 71.4
CiPaw.13G147900 Carya illinoinensis HOM05D004500 ORTHO05D005775 0.0e+00 2540.0 1817 72.4
Manes.02G138300 Manihot esculenta HOM05D004500 ORTHO05D005775 0.0e+00 2511.5 1815 71.1
Prupe.4G270300 Prunus persica HOM05D004500 ORTHO05D005775 0.0e+00 2505.3 1817 71.3
Duzib168G0672 Durio zibethinus HOM05D004500 ORTHO05D005775 0.0e+00 2479.5 1817 70.6
TAR623G1318 Trochodendron aralioides HOM05D004500 ORTHO05D005775 0.0e+00 2479.5 1807 70.1
Sabra16G0169000 Salix brachista HOM05D004500 ORTHO05D005775 0.0e+00 2474.5 1814 69.8
Potri.001G274500 Populus trichocarpa HOM05D004500 ORTHO05D005775 0.0e+00 2472.6 1812 69.9
Dinv22199 Davidia involucrata HOM05D004500 ORTHO05D005775 0.0e+00 2468.7 1814 70.7
CANSAT54G2073 Cannabis sativa HOM05D004500 ORTHO05D005775 0.0e+00 2465.6 1809 70.1
MD03G1157000 Malus domestica HOM05D004500 ORTHO05D005775 0.0e+00 2460.6 1817 70.6
TWI75G0701 Tripterygium wilfordii HOM05D004500 ORTHO05D005775 0.0e+00 2459.9 1814 69.9
Gorai.006G122400 Gossypium raimondii HOM05D004500 ORTHO05D005775 0.0e+00 2453.7 1817 70.2
Ciclev10014018m.g Citrus clementina HOM05D004500 ORTHO05D005775 0.0e+00 2442.9 1814 69.6
Gohir.D09G105200 Gossypium hirsutum HOM05D004500 ORTHO05D005775 0.0e+00 2432.5 1816 69.6
Atru.chr3.2856 Acer truncatum HOM05D004500 ORTHO05D005775 0.0e+00 2425.6 1840 68.6
RcHm_v2.0_Chr5g0051931 Rosa chinensis HOM05D004500 ORTHO05D005775 0.0e+00 2422.1 1811 69.5
Atru.chr3.2854 Acer truncatum HOM05D004500 ORTHO05D005775 0.0e+00 2417.9 1840 68.5
FAN21G1747 Fragaria x ananassa HOM05D004500 ORTHO05D005775 0.0e+00 2401.7 1816 69.2
FvH4_3g28920 Fragaria vesca HOM05D004500 ORTHO05D005775 0.0e+00 2399.0 1814 69.3
CsaV3_6G038790 Cucumis sativus L. HOM05D004500 ORTHO05D005775 0.0e+00 2397.5 1820 68.6
Eucgr.J00673 Eucalyptus grandis HOM05D004500 ORTHO05D005775 0.0e+00 2397.1 1816 67.5
MELO3C014542.2 Cucumis melo HOM05D004500 ORTHO05D005775 0.0e+00 2396.3 1816 68.8
ClCG02G022670 Citrullus lanatus HOM05D004500 ORTHO05D005775 0.0e+00 2375.9 1831 68.5
ECA233G3879 Erigeron canadensis HOM05D004500 ORTHO05D005775 0.0e+00 2367.8 1805 67.3
Sed0001243 Sechium edule HOM05D004500 ORTHO05D005775 0.0e+00 2363.2 1804 67.8
Actinidia06989 Actinidia chinensis HOM05D004500 ORTHO05D005775 0.0e+00 2362.4 1805 67.9
FAN11G1622 Fragaria x ananassa HOM05D004500 ORTHO05D005775 0.0e+00 2362.0 1838 67.8
THA.LOC104800461 Tarenaya hassleriana HOM05D004500 ORTHO05D005775 0.0e+00 2343.5 1811 66.9
HanXRQChr12g0380331 Helianthus annuus HOM05D004500 ORTHO05D005775 0.0e+00 2342.8 1812 66.2
RcHm_v2.0_Chr5g0051871 Rosa chinensis HOM05D004500 ORTHO05D005775 0.0e+00 2335.1 1817 67.5
Lsat_1_v5_gn_5_70881 Lactuca sativa HOM05D004500 ORTHO05D005775 0.0e+00 2333.9 1816 66.5
Nn7g36895 Nelumbo nucifera HOM05D004500 ORTHO05D005775 0.0e+00 2330.4 1806 66.5
FAN25G3650 Fragaria x ananassa HOM05D004500 ORTHO05D005775 0.0e+00 2329.7 1816 67.5
Aqoxy1G00409 Aquilegia oxysepala HOM05D004500 ORTHO05D005775 0.0e+00 2313.5 1817 65.7
Migut.D00681 Erythranthe guttata HOM05D004500 ORTHO05D005775 0.0e+00 2303.1 1820 65.2
Sopen11g024300 Solanum pennellii HOM05D004500 ORTHO05D005775 0.0e+00 2296.9 1815 64.9
CSS0026558 Camellia sinensis var. sinensis HOM05D004500 ORTHO05D005775 0.0e+00 2296.5 1844 65.7
CAN.G1050.5 Capsicum annuum HOM05D004500 ORTHO05D005775 0.0e+00 2288.5 1822 64.6
Cc01_g06520 Coffea canephora HOM05D004500 ORTHO05D005775 0.0e+00 2284.6 1840 65.6
MBI19_g07497_MAGBIO Magnolia biondii HOM05D004500 ORTHO05D005775 0.0e+00 2281.5 1815 65.3
SalBow6G2693 Salvia bowleyana HOM05D004500 ORTHO05D005775 0.0e+00 2270.7 1820 64.6
Sc09g0001130 Simmondsia chinensis HOM05D004500 ORTHO05D005775 0.0e+00 2255.3 1812 65.2
GSVIVG01037358001 Vitis vinifera HOM05D004500 ORTHO05D005775 0.0e+00 2255.3 2362 53.8
MSTRG.21337 Avicennia marina HOM05D004500 ORTHO05D005775 0.0e+00 2251.5 1822 63.9
Thhalv10011180m.g Eutrema salsugineum HOM05D004500 ORTHO05D005775 0.0e+00 2246.1 1821 64.1
Carub.0004s0721 Capsella rubella HOM05D004500 ORTHO05D005775 0.0e+00 2243.0 1807 63.8
AT2G26780 Arabidopsis thaliana HOM05D004500 ORTHO05D005775 0.0e+00 2241.8 1802 63.9
CARHR118960 Cardamine hirsuta HOM05D004500 ORTHO05D005775 0.0e+00 2239.9 1805 64.1
AL4G19970 Arabidopsis lyrata HOM05D004500 ORTHO05D005775 0.0e+00 2234.1 1804 63.7
Aa31LG5G9010 Aethionema arabicum HOM05D004500 ORTHO05D005775 0.0e+00 2231.4 1820 63.8
Sp1g40640 Schrenkiella parvula HOM05D004500 ORTHO05D005775 0.0e+00 2226.8 1801 63.7
C03p92100 Brassica napus HOM05D004500 ORTHO05D005775 0.0e+00 2224.1 1808 64.0
A08p01100 Brassica napus HOM05D004500 ORTHO05D005775 0.0e+00 2222.6 1814 63.8
AUR62006566 Chenopodium quinoa HOM05D004500 ORTHO05D005775 0.0e+00 2215.7 1826 63.4
EL10Ac4g10085 Beta vulgaris HOM05D004500 ORTHO05D005775 0.0e+00 2211.0 1820 63.1
AUR62000221 Chenopodium quinoa HOM05D004500 ORTHO05D005775 0.0e+00 2210.3 1813 63.4
Hund07422 Selenicereus undatus HOM05D004500 ORTHO05D005775 0.0e+00 2203.3 1980 59.6
Nitab4.5_0000492g0190 Nicotiana tabacum HOM05D004500 ORTHO05D005775 0.0e+00 2175.6 1816 63.0
SGA_v2.0_scaffold29G12209 Striga asiatica HOM05D004500 ORTHO05D005775 0.0e+00 2171.4 1848 62.0
BolC3t21527H Brassica oleracea HOM05D004500 ORTHO05D005775 0.0e+00 2165.2 1818 62.7
BraA08t32166Z Brassica rapa HOM05D004500 ORTHO05D005775 0.0e+00 2160.6 1827 62.3
Oeu061692.5 Olea europaea HOM05D004500 ORTHO05D005775 0.0e+00 2136.7 1897 60.5
ATR0307G114 Amborella trichopoda HOM05D004500 ORTHO05D005775 0.0e+00 2120.1 1810 61.3
Zm00001eb196280 Zea mays HOM05D004500 ORTHO05D005775 0.0e+00 2052.3 1815 58.6
Gohir.A09G108500 Gossypium hirsutum HOM05D004500 ORTHO05D005775 0.0e+00 1986.1 1479 69.9
PSO339G3895 Papaver somniferum HOM05D004500 ORTHO05D005775 0.0e+00 1940.6 1499 66.6
Thecc.09G254300 Theobroma cacao HOM05D004500 ORTHO05D005775 0.0e+00 1894.8 1395 70.3
Solyc11g062310.2 Solanum lycopersicum HOM05D004500 ORTHO05D005775 0.0e+00 1826.2 1340 68.7
Peaxi162Scf00029g02524 Petunia axillaris HOM05D004500 ORTHO05D005775 0.0e+00 1793.1 1312 70.1
DCAR_023834 Daucus carota HOM05D004500 ORTHO05D005775 0.0e+00 1769.2 1393 65.5
COL.COLO4_06617 Corchorus olitorius HOM05D004500 ORTHO05D005775 0.0e+00 1732.6 1303 68.8
Haze_23271 Corylus avellana HOM05D004500 ORTHO05D005775 0.0e+00 1721.8 1347 67.6
AagrBONN_evm.TU.Sc2ySwM_117.694 Anthoceros agrestis HOM05D004500 ORTHO05D005775 0.0e+00 1633.6 1850 48.5
Lj1C1068G11 Lonicera japonica HOM05D004500 ORTHO05D005775 0.0e+00 1621.7 1335 64.3
Mapoly0009s0155 Marchantia polymorpha HOM05D004500 ORTHO05D005775 0.0e+00 1605.1 1855 47.8
Rhsim13G0205000 Rhododendron simsii HOM05D004500 ORTHO05D005775 0.0e+00 1578.5 1231 67.7
unitig_578.g16660 Utricularia gibba HOM05D004500 ORTHO05D005775 0.0e+00 1548.1 1832 49.0
Pp3c1_28010 Physcomitrium patens HOM05D004500 ORTHO05D005775 0.0e+00 1529.2 1864 45.8
Ah.06g194800 Amaranthus hybridus HOM05D004500 ORTHO05D005775 0.0e+00 1446.0 1150 64.4
SMO228G0054 Selaginella moellendorffii HOM05D004500 ORTHO05D005775 0.0e+00 1432.5 1648 48.1
Nitab4.5_0002026g0140 Nicotiana tabacum HOM05D004500 ORTHO05D005775 0.0e+00 1400.2 1083 66.5
BcaB04g17016 Brassica carinata HOM05D004500 ORTHO05D005775 0.0e+00 1344.3 1350 56.7
Os11g0137300 Oryza sativa ssp. japonica HOM05D004500 ORTHO05D005775 0.0e+00 1331.6 1117 61.8
CDE02G2423 Ceratophyllum demersum HOM05D004500 ORTHO05D005775 0.0e+00 1161.4 1048 58.0
Os12g0134200 Oryza sativa ssp. japonica HOM05D004500 ORTHO05D005775 0.0e+00 1122.8 905 62.2
CBR_g37490 Chara braunii HOM05D004500 ORTHO05D005775 9.1e-281 971.5 1648 36.7
Psat7g231400 Pisum sativum HOM05D004500 ORTHO05D005775 1.8e-276 957.2 598 82.9
SEGI_14316 Sequoiadendron giganteum HOM05D004500 ORTHO05D005775 6.8e-276 955.3 886 56.4
MCO04G062 Micromonas commoda HOM05D004500 ORTHO05D005775 1.3e-247 861.3 1736 33.9
PRCOL_00001646 Prasinoderma coloniale HOM05D004500 ORTHO05D005775 1.9e-238 830.9 1722 33.3
Cpa.g.sc34.185 Carica papaya HOM05D004500 ORTHO05D005775 2.0e-235 820.8 634 66.7
HPP92_022829 Vanilla planifolia HOM05D004500 ORTHO05D005775 1.9e-222 777.7 789 52.9
VMungo0647G1179 Vigna mungo HOM05D004500 ORTHO05D005775 1.3e-215 755.0 456 86.4
Psat7g231320 Pisum sativum HOM05D004500 ORTHO05D005775 3.4e-203 713.8 450 82.9
Cpa.g.sc34.186 Carica papaya HOM05D004500 ORTHO05D005775 4.3e-198 696.8 496 72.4
COL.COLO4_06618 Corchorus olitorius HOM05D004500 ORTHO05D005775 1.2e-179 635.6 455 71.6
Os12g0148400 Oryza sativa ssp. japonica HOM05D004500 ORTHO05D005775 5.0e-178 630.2 691 51.8
Haze_23272 Corylus avellana HOM05D004500 ORTHO05D005775 2.0e-163 581.6 458 70.3
Psat6g216840 Pisum sativum HOM05D004500 ORTHO05D005775 9.4e-161 572.8 315 90.5
Cre04.g217935 Chlamydomonas reinhardtii HOM05D004500 ORTHO05D005775 3.7e-157 560.8 2011 26.7
SEGI_37322 Sequoiadendron giganteum HOM05D004500 ORTHO05D005775 1.4e-156 558.9 499 58.5
vmacro04081 Vaccinium macrocarpon HOM05D004500 ORTHO05D005775 3.4e-142 511.1 347 72.0
FAN21G2043 Fragaria x ananassa HOM05D004500 ORTHO05D005775 3.1e-119 434.9 373 65.4
CDE02G1339 Ceratophyllum demersum HOM05D004500 ORTHO05D005775 1.0e-114 419.9 822 35.0
Cfa026787 Carpinus fangiana HOM05D004500 ORTHO05D005775 1.9e-108 399.1 1495 24.5
Peaxi162Scf00029g02523 Petunia axillaris HOM05D004500 ORTHO05D005775 1.4e-100 372.9 290 66.6
Solyc11g062320.2 Solanum lycopersicum HOM05D004500 ORTHO05D005775 4.8e-96 357.8 297 64.3
Nitab4.5_0002026g0160 Nicotiana tabacum HOM05D004500 ORTHO05D005775 1.3e-93 349.7 298 62.1
vmacro04082 Vaccinium macrocarpon HOM05D004500 ORTHO05D005775 1.4e-76 293.1 161 87.6
Psat0s1467g0200 Pisum sativum HOM05D004500 ORTHO05D005775 3.2e-76 292.0 175 86.3
Psat5g143880 Pisum sativum HOM05D004500 ORTHO05D001434 2.7e-75 288.9 175 85.1
Hma1.2p1_0460F.1_g157660 Hydrangea macrophylla HOM05D004500 ORTHO05D005775 1.9e-68 266.2 195 71.3
vmacro04079 Vaccinium macrocarpon HOM05D004500 ORTHO05D005775 4.4e-65 255.0 270 52.2
HPP92_022831 Vanilla planifolia HOM05D004500 ORTHO05D005775 7.4e-65 254.2 340 42.1
Lj1C1068G17 Lonicera japonica HOM05D004500 ORTHO05D009839 1.4e-63 250.0 338 45.9
Psat6g216720 Pisum sativum HOM05D004500 ORTHO05D005775 6.5e-61 241.1 130 93.1
SEGI_21027 Sequoiadendron giganteum HOM05D004500 ORTHO05D005775 6.1e-59 234.6 206 57.3
Gohir.A09G108566 Gossypium hirsutum HOM05D004500 ORTHO05D005775 3.3e-57 228.8 162 68.5
Thhalv10012226m.g Eutrema salsugineum HOM05D004500 ORTHO05D005775 2.5e-52 212.6 338 44.1
MELO3C032687.2 Cucumis melo HOM05D004500 ORTHO05D005775 2.7e-46 192.6 147 68.0
EL10Ac5g11937 Beta vulgaris HOM05D004500 ORTHO05D005775 1.3e-45 190.3 196 52.6
vmacro04083 Vaccinium macrocarpon HOM05D004500 ORTHO05D005775 1.9e-44 186.4 161 67.7
VMungo0647G0474 Vigna mungo HOM05D004500 ORTHO05D005775 2.5e-44 186.0 167 64.1
BcaC01g01445 Brassica carinata HOM05D004500 ORTHO05D005775 3.6e-43 182.2 144 66.7
PSO339G2400 Papaver somniferum HOM05D004500 ORTHO05D005775 4.9e-40 171.8 290 41.0
CDE02G1487 Ceratophyllum demersum HOM05D004500 ORTHO05D028702 1.2e-38 167.2 215 43.7
arahy.Tifrunner.gnm1.ann1.K04MEX Arachis hypogaea HOM05D004500 ORTHO05D005775 1.1e-36 160.6 174 56.3
SEGI_00521 Sequoiadendron giganteum HOM05D004500 ORTHO05D005775 2.9e-32 146.0 258 36.8
Psat2g099920 Pisum sativum HOM05D001218 ORTHO05D015696 2.4e-31 142.9 90 76.7
Solyc11g062300.3 Solanum lycopersicum HOM05D004500 ORTHO05D028702 3.9e-29 135.6 170 41.2
MELO3C033637.2 Cucumis melo HOM05D007110 ORTHO05D000233 8.6e-29 134.4 149 51.0
Psat2g090360 Pisum sativum HOM05D001218 ORTHO05D015696 9.5e-28 131.0 75 84.0
Psat0s2295g0160 Pisum sativum HOM05D003609 ORTHO05D004185 8.0e-27 127.9 73 89.0
Lj1A1068G47 Lonicera japonica HOM05D004500 ORTHO05D005775 9.8e-25 120.9 77 77.9
SEGI_03367 Sequoiadendron giganteum HOM05D004500 ORTHO05D005775 1.0e-21 110.9 149 43.6
SEGI_28959 Sequoiadendron giganteum HOM05D004500 ORTHO05D050968 3.0e-21 109.4 155 38.7
MELO3C035575.2 Cucumis melo HOM05D004500 ORTHO05D005775 3.3e-20 105.9 92 57.6
Cre04.g217942 Chlamydomonas reinhardtii HOM05D004500 ORTHO05D005775 9.5e-20 104.4 201 30.8
Peaxi162Scf00029g02525 Petunia axillaris HOM05D004500 ORTHO05D028702 4.7e-19 102.1 167 35.3
Lj1A1068G46 Lonicera japonica HOM05D001538 ORTHO05D011045 1.1e-18 100.9 92 58.7
SEGI_00784 Sequoiadendron giganteum HOM05D004500 ORTHO05D005775 6.8e-18 98.2 84 52.4
SEGI_16541 Sequoiadendron giganteum HOM05D004500 ORTHO05D011045 1.6e-14 87.0 55 72.7
HPP92_022828 Vanilla planifolia HOM05D004500 ORTHO05D005775 3.5e-14 85.9 81 61.7
TPR.G24491 Trifolium pratense HOM05D003400 ORTHO05D003687 6.0e-14 85.1 78 61.5
SEGI_01442 Sequoiadendron giganteum HOM05D004500 ORTHO05D050968 2.5e-12 79.7 115 37.4
EL10Ac5g12062 Beta vulgaris HOM05D004500 ORTHO05D005775 4.7e-11 75.5 60 58.3
MD12G1083300 Malus domestica HOM05D004500 ORTHO05D005775 6.2e-11 75.1 80 61.2
Nitab4.5_0004629g0080 Nicotiana tabacum HOM05D004500 ORTHO05D028702 4.0e-10 72.4 65 46.2
SEGI_07125 Sequoiadendron giganteum HOM05D004500 ORTHO05D005775 6.8e-10 71.6 111 42.3
vmacro04080 Vaccinium macrocarpon HOM05D004500 ORTHO05D005775 4.1e-07 62.4 38 76.3


User provided reference genes

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