Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_06178_v3 Cicer arietinum L. HOM05D005072 ORTHO05D006209 0.0e+00 1159.1 591 100.0
TPR.G16394 Trifolium pratense HOM05D005072 ORTHO05D006209 1.2e-303 1045.8 591 89.8
Medtr5g088780 Medicago truncatula HOM05D005072 ORTHO05D006209 2.4e-294 1015.0 591 87.8
Psat0s680g0080 Pisum sativum HOM05D005072 ORTHO05D006209 9.0e-286 986.5 591 84.4
Lalb_Chr10g0106071 Lupinus albus HOM05D005072 ORTHO05D006209 2.1e-258 895.6 588 78.2
Glyma.02G277200 Glycine max HOM05D005072 ORTHO05D006209 6.7e-257 890.6 589 76.4
Phvul.008G203700 Phaseolus vulgaris HOM05D005072 ORTHO05D006209 4.3e-256 887.9 591 75.3
Glyma.14G038000 Glycine max HOM05D005072 ORTHO05D006209 4.8e-255 884.4 591 76.0
arahy.Tifrunner.gnm1.ann1.BCWF2K Arachis hypogaea HOM05D005072 ORTHO05D006209 1.4e-249 866.3 589 74.0
LjContig00564g0010958 Lotus japonicus HOM05D005072 ORTHO05D006209 5.7e-248 860.9 592 76.2
arahy.Tifrunner.gnm1.ann1.2SU3A5 Arachis hypogaea HOM05D005072 ORTHO05D006209 1.3e-244 849.7 619 70.1
Dinv24604 Davidia involucrata HOM05D005072 ORTHO05D006209 3.8e-244 848.2 594 72.1
Ciclev10014694m.g Citrus clementina HOM05D005072 ORTHO05D006209 2.7e-242 842.0 589 71.5
Cfa010164 Carpinus fangiana HOM05D005072 ORTHO05D006209 1.5e-240 836.3 598 69.9
Hma1.2p1_1843F.1_g305080 Hydrangea macrophylla HOM05D005072 ORTHO05D006209 2.6e-237 825.5 595 69.7
Atru.chr3.2833 Acer truncatum HOM05D005072 ORTHO05D006209 1.7e-236 822.8 586 70.3
Prupe.4G269200 Prunus persica HOM05D005072 ORTHO05D006209 5.5e-235 817.8 585 69.7
TWI79G0414 Tripterygium wilfordii HOM05D005072 ORTHO05D006209 6.1e-234 814.3 593 68.8
MD03G1163400 Malus domestica HOM05D005072 ORTHO05D006209 5.3e-230 801.2 600 68.2
Thecc.09G251600 Theobroma cacao HOM05D005072 ORTHO05D006209 5.3e-230 801.2 598 68.2
GSVIVG01037391001 Vitis vinifera HOM05D005072 ORTHO05D006209 2.6e-229 798.9 615 66.7
TAR623G1264 Trochodendron aralioides HOM05D005072 ORTHO05D006209 3.5e-229 798.5 591 69.5
Haze_23549 Corylus avellana HOM05D005072 ORTHO05D006209 7.7e-229 797.3 623 65.7
vmacro14280 Vaccinium macrocarpon HOM05D005072 ORTHO05D006209 4.2e-227 791.6 597 66.5
Potri.009G022200 Populus trichocarpa HOM05D005072 ORTHO05D006209 3.0e-225 785.4 597 66.0
Gohir.A08G009400 Gossypium hirsutum HOM05D005072 ORTHO05D006209 8.8e-225 783.9 597 65.8
Gohir.D08G019500 Gossypium hirsutum HOM05D005072 ORTHO05D006209 2.0e-224 782.7 597 65.7
Gorai.004G014000 Gossypium raimondii HOM05D005072 ORTHO05D006209 3.4e-224 781.9 597 65.5
RcHm_v2.0_Chr7g0190441 Rosa chinensis HOM05D005072 ORTHO05D006209 3.7e-223 778.5 590 66.4
Duzib170G0952 Durio zibethinus HOM05D005072 ORTHO05D006209 6.3e-223 777.7 597 65.7
CiPaw.14G108700 Carya illinoinensis HOM05D005072 ORTHO05D006209 2.4e-222 775.8 514 73.7
FAN18G1184 Fragaria x ananassa HOM05D005072 ORTHO05D006209 3.1e-222 775.4 592 66.2
CANSAT54G0197 Cannabis sativa HOM05D005072 ORTHO05D006209 5.9e-221 771.2 594 65.8
COL.COLO4_33262 Corchorus olitorius HOM05D005072 ORTHO05D006209 5.9e-221 771.2 597 64.8
Migut.N02404 Erythranthe guttata HOM05D005072 ORTHO05D006209 8.5e-220 767.3 593 65.8
Cpa.g.sc34.205 Carica papaya HOM05D005072 ORTHO05D006209 1.1e-219 766.9 586 66.7
FvH4_5g07960 Fragaria vesca HOM05D005072 ORTHO05D006209 5.5e-219 764.6 592 65.4
SGA_v2.0_scaffold16G07591 Striga asiatica HOM05D005072 ORTHO05D006209 1.2e-218 763.5 583 65.7
HanXRQChr05g0144311 Helianthus annuus HOM05D005072 ORTHO05D006209 2.3e-217 759.2 585 65.6
FAN13G0840 Fragaria x ananassa HOM05D005072 ORTHO05D006209 5.7e-216 754.6 592 64.9
FAN04G1678 Fragaria x ananassa HOM05D005072 ORTHO05D006209 1.4e-214 750.0 592 64.5
Manes.02G135100 Manihot esculenta HOM05D005072 ORTHO05D006209 9.1e-214 747.3 517 70.8
Eucgr.B03761 Eucalyptus grandis HOM05D005072 ORTHO05D006209 2.3e-212 742.7 593 63.1
CAN.G651.4 Capsicum annuum HOM05D005072 ORTHO05D006209 5.0e-212 741.5 578 64.4
Cc01_g07180 Coffea canephora HOM05D005072 ORTHO05D006209 5.0e-212 741.5 593 64.9
FAN08G0571 Fragaria x ananassa HOM05D005072 ORTHO05D006209 5.0e-212 741.5 592 64.0
Aqoxy2G00052 Aquilegia oxysepala HOM05D005072 ORTHO05D006209 1.5e-211 740.0 598 63.9
Oeu032059.1 Olea europaea HOM05D005072 ORTHO05D006209 7.2e-211 737.6 596 63.6
PSO675G4775 Papaver somniferum HOM05D005072 ORTHO05D006209 3.6e-210 735.3 592 64.9
QL01p016041 Quercus lobata HOM05D005072 ORTHO05D006209 4.0e-209 731.9 784 52.0
Sopen01g004520 Solanum pennellii HOM05D005072 ORTHO05D006209 4.0e-209 731.9 590 63.1
Carub.0006s1080 Capsella rubella HOM05D005072 ORTHO05D006209 4.4e-208 728.4 591 61.4
PGR102G1516 Punica granatum HOM05D005072 ORTHO05D006209 7.5e-208 727.6 588 62.8
ECA238G1118 Erigeron canadensis HOM05D005072 ORTHO05D006209 1.7e-207 726.5 583 64.2
PSO541G4749 Papaver somniferum HOM05D005072 ORTHO05D006209 1.7e-207 726.5 593 63.7
Sp6g31350 Schrenkiella parvula HOM05D005072 ORTHO05D006209 2.2e-207 726.1 591 61.8
Solyc01g009030.4 Solanum lycopersicum HOM05D005072 ORTHO05D006209 2.2e-207 726.1 590 62.5
A02p01460 Brassica napus HOM05D005072 ORTHO05D006209 3.7e-207 725.3 575 63.0
C02p05680 Brassica napus HOM05D005072 ORTHO05D006209 1.1e-206 723.8 575 63.0
Nitab4.5_0002300g0060 Nicotiana tabacum HOM05D005072 ORTHO05D006209 1.1e-206 723.8 604 60.9
THA.LOC104799144 Tarenaya hassleriana HOM05D005072 ORTHO05D006209 1.8e-206 723.0 590 61.7
AL6G23090 Arabidopsis lyrata HOM05D005072 ORTHO05D006209 5.4e-206 721.5 593 60.5
BraA02t05125Z Brassica rapa HOM05D005072 ORTHO05D006209 7.0e-206 721.1 583 61.9
A03p05510 Brassica napus HOM05D005072 ORTHO05D006209 2.0e-205 719.5 591 62.1
BolC2t06512H Brassica oleracea HOM05D005072 ORTHO05D006209 2.0e-205 719.5 583 61.9
ClCG02G022550 Citrullus lanatus HOM05D005072 ORTHO05D006209 7.8e-205 717.6 599 60.9
Thhalv10013024m.g Eutrema salsugineum HOM05D005072 ORTHO05D006209 7.8e-205 717.6 590 61.2
MSTRG.12421 Avicennia marina HOM05D005072 ORTHO05D006209 2.3e-204 716.1 597 62.5
CARHR200820 Cardamine hirsuta HOM05D005072 ORTHO05D006209 1.5e-203 713.4 591 59.9
CsaV3_6G038680 Cucumis sativus L. HOM05D005072 ORTHO05D006209 3.6e-202 708.8 596 61.2
MELO3C014531.2 Cucumis melo HOM05D005072 ORTHO05D006209 1.0e-201 707.2 596 60.7
BolC3t13149H Brassica oleracea HOM05D005072 ORTHO05D006209 3.1e-201 705.7 590 61.5
Lj1C290G6 Lonicera japonica HOM05D005072 ORTHO05D006209 3.1e-201 705.7 594 62.3
MBI13_g20755_MAGBIO Magnolia biondii HOM05D005072 ORTHO05D006209 3.1e-201 705.7 652 58.3
C03p06430 Brassica napus HOM05D005072 ORTHO05D006209 4.0e-201 705.3 589 61.5
BraA03t09889Z Brassica rapa HOM05D005072 ORTHO05D006209 1.5e-200 703.4 565 62.5
Aa31LG3G14940 Aethionema arabicum HOM05D005072 ORTHO05D006209 2.6e-200 702.6 604 59.3
Lsat_1_v5_gn_2_36161 Lactuca sativa HOM05D005072 ORTHO05D006209 1.7e-199 699.9 559 62.6
DCAR_023860 Daucus carota HOM05D005072 ORTHO05D006209 3.7e-199 698.7 514 65.2
Nitab4.5_0000428g0060 Nicotiana tabacum HOM05D005072 ORTHO05D006209 1.4e-198 696.8 583 60.5
CSS0034993 Camellia sinensis var. sinensis HOM05D005072 ORTHO05D006209 2.0e-197 693.0 591 61.6
Hund21956 Selenicereus undatus HOM05D005072 ORTHO05D006209 3.5e-197 692.2 589 60.3
EL10Ac4g10071 Beta vulgaris HOM05D005072 ORTHO05D006209 8.3e-191 671.0 584 59.8
Peaxi162Scf00050g02225 Petunia axillaris HOM05D005072 ORTHO05D006209 1.2e-189 667.2 575 60.0
SalBow3G4478 Salvia bowleyana HOM05D005072 ORTHO05D006209 4.9e-183 645.2 601 58.7
Sed0004908 Sechium edule HOM05D005072 ORTHO05D006209 2.1e-181 639.8 551 59.5
CSS0024863 Camellia sinensis var. sinensis HOM05D005072 ORTHO05D006209 2.5e-179 632.9 555 60.5
AT5G12290 Arabidopsis thaliana HOM05D005072 ORTHO05D006209 3.3e-179 632.5 519 62.0
Sc06g0004780 Simmondsia chinensis HOM05D005072 ORTHO05D006209 1.2e-176 624.0 488 63.5
BcaB01g05412 Brassica carinata HOM05D005072 ORTHO05D006209 2.6e-176 622.9 593 56.8
Ah.04g159570 Amaranthus hybridus HOM05D005072 ORTHO05D006209 1.4e-174 617.1 577 56.7
AUR62006578 Chenopodium quinoa HOM05D005072 ORTHO05D006209 2.8e-170 602.8 582 53.6
AUR62000232 Chenopodium quinoa HOM05D005072 ORTHO05D006209 4.9e-167 592.0 607 52.1
ATR0307G105 Amborella trichopoda HOM05D005072 ORTHO05D006209 1.7e-164 583.6 470 64.7
Actinidia38495 Actinidia chinensis HOM05D005072 ORTHO05D006209 4.3e-155 552.4 356 75.3
Zm00001eb017230 Zea mays HOM05D005072 ORTHO05D006209 8.4e-151 538.1 539 50.3
unitig_27.g25017 Utricularia gibba HOM05D005072 ORTHO05D006209 1.9e-139 500.4 616 46.8
Duzib168G1271 Durio zibethinus HOM05D005072 ORTHO05D006209 8.2e-122 441.8 382 56.5
Os03g0377500 Oryza sativa ssp. japonica HOM05D005072 ORTHO05D006209 3.5e-120 436.4 446 50.7
SMO147G0386 Selaginella moellendorffii HOM05D005072 ORTHO05D006209 2.2e-119 433.7 503 44.9
Pp3c22_1870 Physcomitrium patens HOM05D005072 ORTHO05D006209 7.2e-118 428.7 545 43.1
Mapoly0034s0093 Marchantia polymorpha HOM05D005072 ORTHO05D006209 1.7e-114 417.5 565 41.8
HPP92_015601 Vanilla planifolia HOM05D005072 ORTHO05D006209 3.7e-114 416.4 300 67.7
Pp3c3_6740 Physcomitrium patens HOM05D005072 ORTHO05D006209 1.0e-111 408.3 549 41.9
Lj1C297T8 Lonicera japonica HOM05D005072 ORTHO05D006209 4.1e-105 386.3 356 56.7
Glyma.14G037400 Glycine max HOM05D005072 ORTHO05D006209 5.7e-91 339.3 216 81.9
CDE07G0611 Ceratophyllum demersum HOM05D005072 ORTHO05D006209 3.9e-87 326.6 216 77.8
Actinidia29952 Actinidia chinensis HOM05D005072 ORTHO05D006209 4.1e-81 306.6 281 58.7
Nn7g36972 Nelumbo nucifera HOM05D005072 ORTHO05D006209 6.8e-76 289.3 341 46.6
AagrBONN_evm.TU.Sc2ySwM_117.924 Anthoceros agrestis HOM05D005072 ORTHO05D006209 5.1e-71 273.1 359 39.8
Aqoxy279s001 Aquilegia oxysepala HOM05D005072 ORTHO05D006209 5.1e-71 273.1 292 52.4
PGSC0003DMG403022702 Solanum tuberosum HOM05D005072 ORTHO05D006209 6.6e-71 272.7 176 77.8
CBR_g51661 Chara braunii HOM05D005072 ORTHO05D006209 3.1e-68 263.8 341 41.3
Os03g0377300 Oryza sativa ssp. japonica HOM05D005072 ORTHO05D006209 2.6e-67 260.8 291 43.3
Actinidia27132 Actinidia chinensis HOM05D005072 ORTHO05D006209 2.6e-51 207.6 170 62.4
Lj1A297G59 Lonicera japonica HOM05D005072 ORTHO05D006209 4.5e-43 180.3 112 73.2
SEGI_25760 Sequoiadendron giganteum HOM05D005072 ORTHO05D006209 3.2e-41 174.1 123 64.2
SEGI_30846 Sequoiadendron giganteum HOM05D005072 ORTHO05D006209 5.6e-38 163.3 125 69.6
Hma1.2p1_2592F.1_g325070 Hydrangea macrophylla HOM05D005072 ORTHO05D006209 2.1e-32 144.8 112 62.5
ECA233G6112 Erigeron canadensis HOM05D005072 ORTHO05D006209 2.7e-32 144.4 273 35.5
Hma1.2p1_2592F.1_g325060 Hydrangea macrophylla HOM05D005072 ORTHO05D006209 7.4e-30 136.3 102 67.6
VMungo1215G1729 Vigna mungo HOM05D005072 ORTHO05D006209 2.0e-27 128.3 77 76.6
VMungo1245G0001 Vigna mungo HOM05D005072 ORTHO05D006209 4.5e-27 127.1 82 73.2
VMungo1127G1498 Vigna mungo HOM05D005072 ORTHO05D006209 1.0e-26 125.9 80 73.8
AL340U10010 Arabidopsis lyrata HOM05D005072 ORTHO05D006209 3.8e-26 124.0 98 57.1
Lsat_1_v5_gn_4_59101 Lactuca sativa HOM05D005072 ORTHO05D006209 3.2e-25 120.9 100 56.0
Cre14.g610351 Chlamydomonas reinhardtii HOM05D005072 ORTHO05D006209 3.6e-24 117.5 371 26.7
Nn001s41348 Nelumbo nucifera HOM05D005072 ORTHO05D006209 3.9e-23 114.0 68 76.5
MCO07G292 Micromonas commoda HOM05D005072 ORTHO05D006209 2.5e-22 111.3 565 20.9
Os03g0356470 Oryza sativa ssp. japonica HOM05D005072 ORTHO05D006209 4.3e-22 110.5 178 34.3
Lsat_1_v5_gn_5_119240 Lactuca sativa HOM05D005072 ORTHO05D006209 1.6e-21 108.6 85 57.6
SEGI_31829 Sequoiadendron giganteum HOM05D005072 ORTHO05D006209 3.4e-19 100.9 129 43.4
arahy.Tifrunner.gnm1.ann1.ELE64U Arachis hypogaea HOM05D005072 ORTHO05D006209 8.5e-18 96.3 220 31.8
ECA248G3958 Erigeron canadensis HOM05D005072 ORTHO05D006209 1.7e-13 82.0 123 39.8
arahy.Tifrunner.gnm1.ann1.N4LM1Q Arachis hypogaea HOM05D005072 ORTHO05D007788 1.4e-12 79.0 58 70.7
ECA233G4564 Erigeron canadensis HOM05D005072 ORTHO05D189103 1.2e-11 75.9 478 24.7
Glyma.09G128251 Glycine max HOM05D005072 ORTHO05D006209 2.0e-11 75.1 88 52.3
Lsat_1_v5_gn_8_119321 Lactuca sativa HOM05D005072 ORTHO05D006209 1.7e-10 72.0 60 48.3
SMO025G0001 Selaginella moellendorffii HOM05D012532 ORTHO05D006209 2.9e-10 71.2 138 35.5
Lsat_1_v5_gn_4_56401 Lactuca sativa HOM05D005072 ORTHO05D006209 6.5e-10 70.1 50 56.0
Cfa026272 Carpinus fangiana HOM05D005072 ORTHO05D126095 2.5e-09 68.2 238 25.6
arahy.Tifrunner.gnm1.ann1.BVT45G Arachis hypogaea HOM05D005549 ORTHO05D006771 8.8e-07 59.7 33 78.8
Oeu032057.1 Olea europaea HOM05D005072 ORTHO05D006209 1.1e-06 59.3 160 33.1
arahy.Tifrunner.gnm1.ann1.FGGA0D Arachis hypogaea HOM05D002489 ORTHO05D002653 4.4e-06 57.4 33 75.8


User provided reference genes

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