Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_06137_v3 Cicer arietinum L. HOM05D000881 ORTHO05D000666 1.5e-107 392.9 202 100.0
Medtr5g087480 Medicago truncatula HOM05D000881 ORTHO05D000666 6.4e-58 228.0 308 48.4
TPR.G11651 Trifolium pratense HOM05D000881 ORTHO05D000666 3.1e-52 209.1 277 47.7
LjContig00564g0023641 Lotus japonicus HOM05D000881 ORTHO05D000666 1.9e-38 163.3 268 42.2
Psat2g023200 Pisum sativum HOM05D000881 ORTHO05D000666 2.7e-32 142.9 200 49.0
Glyma.02G272600 Glycine max HOM05D000881 ORTHO05D000666 1.3e-29 134.0 220 44.1
Glyma.14G045400 Glycine max HOM05D000881 ORTHO05D000666 2.6e-27 126.3 213 43.7
VMungo0647G0058 Vigna mungo HOM05D000881 ORTHO05D000666 2.1e-24 116.7 196 41.3
Phvul.008G209700 Phaseolus vulgaris HOM05D000881 ORTHO05D000666 1.8e-23 113.6 210 41.0
arahy.Tifrunner.gnm1.ann1.XPFB8W Arachis hypogaea HOM05D000881 ORTHO05D000666 1.1e-20 104.4 227 37.0
Lalb_Chr10g0105791 Lupinus albus HOM05D000881 ORTHO05D000666 5.3e-20 102.1 224 37.1
arahy.Tifrunner.gnm1.ann1.U52HT2 Arachis hypogaea HOM05D000881 ORTHO05D000666 4.9e-18 95.5 227 36.6
Phvul.008G209800 Phaseolus vulgaris HOM05D000881 ORTHO05D000666 2.7e-16 89.7 228 36.0
Psat2g023360 Pisum sativum HOM05D000881 ORTHO05D000666 4.5e-11 72.4 220 31.4
LjContig00564g0002053 Lotus japonicus HOM05D000881 ORTHO05D000666 7.6e-11 71.6 222 32.0
Medtr5g087470 Medicago truncatula HOM05D000881 ORTHO05D000666 2.9e-10 69.7 230 29.6
arahy.Tifrunner.gnm1.ann1.PZF4SB Arachis hypogaea HOM05D000881 ORTHO05D000666 8.4e-10 68.2 278 29.5
arahy.Tifrunner.gnm1.ann1.ZVX95B Arachis hypogaea HOM05D000881 ORTHO05D000666 8.4e-10 68.2 279 28.7
Glyma.14G045300 Glycine max HOM05D000881 ORTHO05D000666 9.3e-09 64.7 234 29.9
Gohir.D08G017600 Gossypium hirsutum HOM05D000881 ORTHO05D000666 9.3e-09 64.7 198 29.8
VMungo0647G1281 Vigna mungo HOM05D000881 ORTHO05D000666 1.6e-08 63.9 237 29.5
Lalb_Chr10g0105781 Lupinus albus HOM05D000881 ORTHO05D000666 2.7e-08 63.2 186 28.5
Ah.08g222550 Amaranthus hybridus HOM05D000881 ORTHO05D000666 7.9e-08 61.6 74 44.6
Manes.04G059912 Manihot esculenta HOM05D000881 ORTHO05D000666 1.3e-07 60.8 200 29.5
Psat2g023400 Pisum sativum HOM05D000881 ORTHO05D000666 1.8e-07 60.5 210 27.6
BcaB06g28112 Brassica carinata HOM05D000881 ORTHO05D000666 2.3e-07 60.1 105 41.0
Carub.0004s0767 Capsella rubella HOM05D000881 ORTHO05D000666 2.3e-07 60.1 53 50.9
Atru.chr3.3015 Acer truncatum HOM05D000881 ORTHO05D000666 5.1e-07 58.9 229 25.8
LjContig00564g0024719 Lotus japonicus HOM05D000881 ORTHO05D000666 5.1e-07 58.9 92 40.2
Potri.004G191101 Populus trichocarpa HOM05D000881 ORTHO05D000666 5.1e-07 58.9 89 40.4
Potri.004G191200 Populus trichocarpa HOM05D000881 ORTHO05D000666 5.1e-07 58.9 89 40.4
AUR62001592 Chenopodium quinoa HOM05D000881 ORTHO05D000666 6.7e-07 58.5 72 40.3
THA.LOC104810968 Tarenaya hassleriana HOM05D000881 ORTHO05D000666 6.7e-07 58.5 74 44.6
PGR119G0695 Punica granatum HOM05D000881 ORTHO05D000666 8.7e-07 58.2 121 34.7
BcaC03g13822 Brassica carinata HOM05D000881 ORTHO05D000666 1.1e-06 57.8 212 31.6
Cfa010242 Carpinus fangiana HOM05D001400 ORTHO05D001795 1.1e-06 57.8 59 47.5
Potri.009G153100 Populus trichocarpa HOM05D000881 ORTHO05D000666 1.1e-06 57.8 232 28.0
A03p26740 Brassica napus HOM05D000881 ORTHO05D000666 1.5e-06 57.4 53 49.1
CARHR119520 Cardamine hirsuta HOM05D000881 ORTHO05D000666 1.5e-06 57.4 73 41.1
Thhalv10002090m.g Eutrema salsugineum HOM05D000881 ORTHO05D000666 1.9e-06 57.0 53 50.9
Sabra04G0129800 Salix brachista HOM05D000881 ORTHO05D000666 1.9e-06 57.0 116 37.9
Sp4g09910 Schrenkiella parvula HOM05D000881 ORTHO05D000666 1.9e-06 57.0 105 39.0
Actinidia06353 Actinidia chinensis HOM05D000881 ORTHO05D000666 2.5e-06 56.6 194 24.7
Sc21g0006620 Simmondsia chinensis HOM05D000881 ORTHO05D000666 2.5e-06 56.6 71 40.8
BolC2t07090H Brassica oleracea HOM05D000881 ORTHO05D000666 3.3e-06 56.2 207 31.4
EL10Ac7g16246 Beta vulgaris HOM05D000881 ORTHO05D000666 4.3e-06 55.8 75 40.0
EL10Ac7g16247 Beta vulgaris HOM05D000881 ORTHO05D000666 4.3e-06 55.8 66 42.4
BNapus_Darmor_BZH_scaffold_38p01230 Brassica napus HOM05D000881 ORTHO05D000666 4.3e-06 55.8 212 30.7
PGSC0003DMG400008714 Solanum tuberosum HOM05D000881 ORTHO05D000666 4.3e-06 55.8 192 25.0
Medtr5g087450 Medicago truncatula HOM05D000881 ORTHO05D000666 5.7e-06 55.5 209 29.7
Prupe.6G151500 Prunus persica HOM05D000881 ORTHO05D000666 5.7e-06 55.5 53 47.2
AL4G20880 Arabidopsis lyrata HOM05D000881 ORTHO05D000666 7.4e-06 55.1 188 28.7
TWI31G1146 Tripterygium wilfordii HOM05D000881 ORTHO05D000666 7.4e-06 55.1 70 42.9
Ah.08g222530 Amaranthus hybridus HOM05D000881 ORTHO05D000666 9.7e-06 54.7 66 39.4


User provided reference genes

Program Settings