Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_06135_v3 Cicer arietinum L. HOM05D002536 ORTHO05D008091 9.7e-178 626.7 319 100.0
TPR.G11790 Trifolium pratense HOM05D002536 ORTHO05D008091 1.7e-161 572.8 320 90.9
Medtr5g086010 Medicago truncatula HOM05D002536 ORTHO05D008091 2.8e-161 572.0 319 89.3
Medtr5g087440 Medicago truncatula HOM05D002536 ORTHO05D008091 1.1e-157 560.1 319 87.8
Psat2g023480 Pisum sativum HOM05D002536 ORTHO05D008091 9.8e-154 547.0 319 86.2
LjContig00564g0008816 Lotus japonicus HOM05D002536 ORTHO05D008091 2.3e-147 525.8 321 85.4
Lalb_Chr03g0036071 Lupinus albus HOM05D002536 ORTHO05D008091 7.8e-143 510.8 319 80.6
arahy.Tifrunner.gnm1.ann1.SZ684F Arachis hypogaea HOM05D002536 ORTHO05D008091 1.2e-140 503.4 319 79.3
VMungo1309G0890 Vigna mungo HOM05D002536 ORTHO05D008091 1.6e-140 503.1 321 81.3
Phvul.004G133300 Phaseolus vulgaris HOM05D002536 ORTHO05D008091 1.5e-138 496.5 322 81.1
Phvul.008G162400 Phaseolus vulgaris HOM05D002536 ORTHO05D008091 2.1e-135 486.1 321 79.1
arahy.Tifrunner.gnm1.ann1.CBV847 Arachis hypogaea HOM05D002536 ORTHO05D008091 3.3e-133 478.8 304 78.3
arahy.Tifrunner.gnm1.ann1.NZLK2N Arachis hypogaea HOM05D002536 ORTHO05D008091 4.4e-122 441.8 265 83.8
Cfa007856 Carpinus fangiana HOM05D002536 ORTHO05D008091 1.7e-121 439.9 320 73.8
Sabra04G0061700 Salix brachista HOM05D002536 ORTHO05D008091 7.1e-120 434.5 310 71.3
Prupe.3G152500 Prunus persica HOM05D002536 ORTHO05D008091 7.8e-119 431.0 320 71.6
Haze_14213 Corylus avellana HOM05D002536 ORTHO05D008091 1.3e-118 430.3 305 74.8
CANSAT78G0797 Cannabis sativa HOM05D002536 ORTHO05D008091 1.6e-116 423.3 267 81.6
MELO3C020303.2 Cucumis melo HOM05D002536 ORTHO05D008091 2.1e-116 422.9 269 79.6
Actinidia15922 Actinidia chinensis HOM05D002536 ORTHO05D008091 1.1e-115 420.6 315 70.8
Rhsim10G0078900 Rhododendron simsii HOM05D002536 ORTHO05D008091 1.1e-115 420.6 271 78.6
Atru.chr1.1780 Acer truncatum HOM05D002536 ORTHO05D008091 2.4e-115 419.5 281 76.5
Atru.chr1.1783 Acer truncatum HOM05D002536 ORTHO05D008091 2.4e-115 419.5 268 79.1
CiPaw.04G045700 Carya illinoinensis HOM05D002536 ORTHO05D008091 2.4e-115 419.5 320 70.9
arahy.Tifrunner.gnm1.ann1.YLI9AK Arachis hypogaea HOM05D002536 ORTHO05D008091 3.1e-115 419.1 241 85.5
Potri.004G091600 Populus trichocarpa HOM05D002536 ORTHO05D008091 9.0e-115 417.5 271 77.5
QL05p059601 Quercus lobata HOM05D002536 ORTHO05D008091 9.0e-115 417.5 266 80.1
TAR622G0880 Trochodendron aralioides HOM05D002536 ORTHO05D008091 2.0e-114 416.4 279 76.0
MD09G1260700 Malus domestica HOM05D002536 ORTHO05D008091 2.6e-114 416.0 265 80.4
FAN23G2237 Fragaria x ananassa HOM05D002536 ORTHO05D008091 7.6e-114 414.5 319 69.3
QL05p059839 Quercus lobata HOM05D002536 ORTHO05D008091 7.6e-114 414.5 266 80.1
TWI53G1346 Tripterygium wilfordii HOM05D002536 ORTHO05D008091 9.9e-114 414.1 279 75.3
GSVIVG01030878001 Vitis vinifera HOM05D002536 ORTHO05D008091 2.2e-113 412.9 319 70.2
CsaV3_3G017670 Cucumis sativus L. HOM05D002536 ORTHO05D008091 3.8e-113 412.1 266 78.9
Sed0014940 Sechium edule HOM05D002536 ORTHO05D008091 3.8e-113 412.1 269 77.7
Eucgr.F02816 Eucalyptus grandis HOM05D002536 ORTHO05D008091 6.4e-113 411.4 267 76.8
COL.COLO4_16592 Corchorus olitorius HOM05D002536 ORTHO05D008091 2.4e-112 409.5 273 75.8
DCAR_008922 Daucus carota HOM05D000103 ORTHO05D008091 2.4e-112 409.5 264 80.3
QL05p058873 Quercus lobata HOM05D002536 ORTHO05D008091 2.4e-112 409.5 266 79.3
ClCG05G010840 Citrullus lanatus HOM05D002536 ORTHO05D008091 3.2e-112 409.1 268 78.4
Aqoxy3G00142 Aquilegia oxysepala HOM05D002536 ORTHO05D008091 4.2e-112 408.7 299 69.9
Lj2P435T31 Lonicera japonica HOM05D002536 ORTHO05D008091 1.3e-110 403.7 261 78.5
Ah.10g037920 Amaranthus hybridus HOM05D002536 ORTHO05D008091 2.3e-110 402.9 268 75.7
PGR004G1229 Punica granatum HOM05D002536 ORTHO05D008091 2.3e-110 402.9 299 72.2
EL10Ac2g04494 Beta vulgaris HOM05D002536 ORTHO05D008091 3.9e-110 402.1 271 74.9
Glyma.14G164000 Glycine max HOM05D002536 ORTHO05D008091 8.7e-110 401.0 320 70.6
AUR62023248 Chenopodium quinoa HOM05D002536 ORTHO05D008091 1.1e-109 400.6 267 76.0
ECA232G4028 Erigeron canadensis HOM05D002536 ORTHO05D008091 2.5e-109 399.4 297 70.7
FvH4_1g30050 Fragaria vesca HOM05D002536 ORTHO05D008091 4.3e-109 398.7 319 67.1
Ciclev10012168m.g Citrus clementina HOM05D002536 ORTHO05D008091 7.3e-109 397.9 334 66.2
Aa31LG11G12180 Aethionema arabicum HOM05D002536 ORTHO05D008091 1.6e-108 396.7 269 73.2
GSVIVG01030879001 Vitis vinifera HOM05D002536 ORTHO05D008091 8.1e-108 394.4 267 76.4
Cpa.g.sc116.19 Carica papaya HOM05D002536 ORTHO05D008091 1.4e-107 393.7 268 75.7
Cc07_g08230 Coffea canephora HOM05D002536 ORTHO05D008091 4.0e-107 392.1 267 73.0
MSTRG.23612 Avicennia marina HOM05D002536 ORTHO05D008091 9.0e-107 391.0 267 73.4
HanXRQChr11g0325231 Helianthus annuus HOM05D002536 ORTHO05D008091 1.2e-106 390.6 267 74.2
RcHm_v2.0_Chr3g0492091 Rosa chinensis HOM05D002536 ORTHO05D008091 1.5e-106 390.2 307 68.4
Duzib248G1146 Durio zibethinus HOM05D002536 ORTHO05D008091 2.0e-106 389.8 316 67.1
Hund13690 Selenicereus undatus HOM05D002536 ORTHO05D008091 2.6e-106 389.4 266 74.4
Gohir.A04G142800 Gossypium hirsutum HOM05D002536 ORTHO05D008091 3.4e-106 389.0 316 66.1
FAN26G2179 Fragaria x ananassa HOM05D002536 ORTHO05D008091 7.6e-106 387.9 319 65.8
Thecc.02G292900 Theobroma cacao HOM05D002536 ORTHO05D008091 1.3e-105 387.1 273 74.0
Gohir.D04G186100 Gossypium hirsutum HOM05D002536 ORTHO05D008091 1.7e-105 386.7 316 65.8
Gorai.012G182500 Gossypium raimondii HOM05D002536 ORTHO05D008091 1.7e-105 386.7 316 65.8
Migut.H00262 Erythranthe guttata HOM05D002536 ORTHO05D008091 2.2e-105 386.3 323 65.0
Nn3g18195 Nelumbo nucifera HOM05D002536 ORTHO05D008091 2.9e-105 386.0 294 69.0
Sp6g26760 Schrenkiella parvula HOM05D002536 ORTHO05D008091 2.9e-105 386.0 271 70.8
Thhalv10014009m.g Eutrema salsugineum HOM05D002536 ORTHO05D008091 6.4e-105 384.8 271 70.5
Solyc02g091320.4 Solanum lycopersicum HOM05D002536 ORTHO05D008091 8.4e-105 384.4 272 74.3
Sopen02g035940 Solanum pennellii HOM05D002536 ORTHO05D008091 8.4e-105 384.4 272 74.3
CSS0023678 Camellia sinensis var. sinensis HOM05D002536 ORTHO05D006290 1.9e-104 383.3 266 74.8
SalBow3G4287 Salvia bowleyana HOM05D002536 ORTHO05D008091 1.9e-104 383.3 306 65.7
Lsat_1_v5_gn_4_154760 Lactuca sativa HOM05D002536 ORTHO05D008091 3.2e-104 382.5 297 67.7
MBI16_g05920_MAGBIO Magnolia biondii HOM05D002536 ORTHO05D006290 3.2e-104 382.5 267 73.8
CAN.G625.80 Capsicum annuum HOM05D002536 ORTHO05D008091 4.2e-104 382.1 272 73.5
Dinv19004 Davidia involucrata HOM05D002536 ORTHO05D008091 4.2e-104 382.1 323 65.9
FAN19G1396 Fragaria x ananassa HOM05D002536 ORTHO05D008091 5.4e-104 381.7 265 74.3
Hma1.2p1_0283F.1_g113560 Hydrangea macrophylla HOM05D002536 ORTHO05D008091 9.3e-104 380.9 324 65.4
Manes.01G115200 Manihot esculenta HOM05D002536 ORTHO05D008091 6.0e-103 378.3 235 82.6
Oeu047422.1 Olea europaea HOM05D002536 ORTHO05D008091 2.3e-102 376.3 324 64.5
Nitab4.5_0002456g0160 Nicotiana tabacum HOM05D002536 ORTHO05D008091 6.7e-102 374.8 272 73.2
Sc10g0000870 Simmondsia chinensis HOM05D002536 ORTHO05D008091 8.7e-102 374.4 267 71.5
Nitab4.5_0002248g0020 Nicotiana tabacum HOM05D002536 ORTHO05D008091 1.1e-101 374.0 272 72.8
Peaxi162Scf00803g00531 Petunia axillaris HOM05D002536 ORTHO05D008091 1.9e-101 373.2 271 72.3
A02p04220 Brassica napus HOM05D002536 ORTHO05D008091 2.5e-101 372.9 308 63.3
BraA02t05385Z Brassica rapa HOM05D002536 ORTHO05D008091 2.5e-101 372.9 308 63.3
PGSC0003DMG400030642 Solanum tuberosum HOM05D002536 ORTHO05D008091 2.1e-100 369.8 272 72.4
BolC2t06821H Brassica oleracea HOM05D002536 ORTHO05D008091 1.1e-99 367.5 267 68.9
C02p09100 Brassica napus HOM05D002536 ORTHO05D008091 5.3e-99 365.2 274 67.9
PSO478G1642 Papaver somniferum HOM05D002536 ORTHO05D008091 1.0e-97 360.9 290 66.9
QL05p059463 Quercus lobata HOM05D002536 ORTHO05D008091 3.8e-97 359.0 266 70.7
PSO782G0049 Papaver somniferum HOM05D002536 ORTHO05D008091 1.1e-96 357.5 272 69.1
CARHR195750 Cardamine hirsuta HOM05D002536 ORTHO05D008091 5.5e-96 355.1 275 66.5
Glyma.13G079200 Glycine max HOM05D002536 ORTHO05D008091 1.2e-95 354.0 230 79.1
AL6G28530 Arabidopsis lyrata HOM05D002536 ORTHO05D008091 1.0e-94 350.9 271 66.8
Carub.0006s1568 Capsella rubella HOM05D002536 ORTHO05D008091 8.7e-94 347.8 271 66.1
Os01g0125700 Oryza sativa ssp. japonica HOM05D002536 ORTHO05D008091 5.3e-91 338.6 265 66.4
AT5G17460 Arabidopsis thaliana HOM05D002536 ORTHO05D008091 2.6e-90 336.3 235 72.3
CDE07G0699 Ceratophyllum demersum HOM05D002536 ORTHO05D008091 7.6e-90 334.7 271 65.7
ATR0041G006 Amborella trichopoda HOM05D002536 ORTHO05D008091 1.3e-86 323.9 318 56.3
AUR62023202 Chenopodium quinoa HOM05D002536 ORTHO05D008091 1.6e-84 317.0 212 74.1
BcaC03g13522 Brassica carinata HOM05D002536 ORTHO05D008091 3.7e-84 315.8 234 67.5
FAN28G0948 Fragaria x ananassa HOM05D002536 ORTHO05D008091 3.1e-83 312.8 218 72.9
SHI17045 Sapria himalayana HOM05D002536 ORTHO05D008091 6.1e-79 298.5 269 61.3
SGA_v2.0_scaffold6G03262 Striga asiatica HOM05D002536 ORTHO05D008091 7.9e-79 298.1 259 59.1
SGA_v2.0_scaffold6G03263 Striga asiatica HOM05D002536 ORTHO05D008091 1.2e-74 284.3 257 58.0
SGA_v2.0_scaffold6G03266 Striga asiatica HOM05D002536 ORTHO05D008091 4.2e-72 275.8 238 60.5
MD09G1260800 Malus domestica HOM05D002536 ORTHO05D008091 1.6e-71 273.9 183 75.4
Zm00001eb334950 Zea mays HOM05D002536 ORTHO05D008091 1.4e-70 270.8 170 78.2
MBI16_g46274_MAGBIO Magnolia biondii HOM05D002536 ORTHO05D008091 6.5e-65 251.9 155 78.1
unitig_899.g15351 Utricularia gibba HOM05D002536 ORTHO05D008091 2.1e-63 246.9 220 56.8
SEGI_34238 Sequoiadendron giganteum HOM05D002536 ORTHO05D008091 1.4e-62 244.2 270 48.5
SGA_v2.0_scaffold6G03268 Striga asiatica HOM05D002536 ORTHO05D008091 5.0e-57 225.7 231 52.8
MD09G1260900 Malus domestica HOM05D002536 ORTHO05D008091 4.0e-46 189.5 178 58.4
FAN28G0812 Fragaria x ananassa HOM05D002536 ORTHO05D008091 2.4e-43 180.3 264 45.1
BcaB08g36768 Brassica carinata HOM05D002536 ORTHO05D007973 7.7e-42 175.3 150 61.3
HPP92_000766 Vanilla planifolia HOM05D002536 ORTHO05D008091 2.3e-25 120.6 118 53.4
A10p21940 Brassica napus HOM05D002536 ORTHO05D008091 2.1e-23 114.0 81 67.9
BcaC04g18790 Brassica carinata HOM05D002536 ORTHO05D008091 2.9e-20 103.6 76 67.1
BolC9t58807H Brassica oleracea HOM05D002536 ORTHO05D008091 2.9e-20 103.6 84 63.1
C09p59690 Brassica napus HOM05D002536 ORTHO05D008091 4.1e-19 99.8 76 65.8
BraA10t44252Z Brassica rapa HOM05D002536 ORTHO05D008091 2.5e-08 63.9 66 51.5
A10p21930 Brassica napus HOM05D002536 ORTHO05D008091 1.6e-07 61.2 79 44.3


User provided reference genes

Program Settings