Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_06120_v3 Cicer arietinum L. HOM05D002897 ORTHO05D008718 1.3e-137 493.0 253 100.0
Medtr5g085980 Medicago truncatula HOM05D002897 ORTHO05D008718 1.9e-112 409.5 250 84.4
Psat4g114440 Pisum sativum HOM05D002897 ORTHO05D008718 4.8e-111 404.8 249 82.3
TPR.G14446 Trifolium pratense HOM05D002897 ORTHO05D008718 2.9e-108 395.6 253 81.8
Glyma.14G046500 Glycine max HOM05D002897 ORTHO05D008718 2.4e-102 375.9 254 76.8
Glyma.02G270500 Glycine max HOM05D002897 ORTHO05D008718 4.5e-101 371.7 256 75.4
Phvul.008G211400 Phaseolus vulgaris HOM05D002897 ORTHO05D008718 7.6e-101 370.9 258 75.2
VMungo0647G1784 Vigna mungo HOM05D002897 ORTHO05D008718 1.4e-99 366.7 254 74.8
arahy.Tifrunner.gnm1.ann1.QRVI7E Arachis hypogaea HOM05D002897 ORTHO05D008718 1.4e-94 350.1 266 68.8
arahy.Tifrunner.gnm1.ann1.YEZ88R Arachis hypogaea HOM05D002897 ORTHO05D008718 4.1e-94 348.6 266 68.4
Lalb_Chr04g0249891 Lupinus albus HOM05D002897 ORTHO05D008718 1.5e-93 346.7 258 70.9
LjContig00564g0002899 Lotus japonicus HOM05D002897 ORTHO05D008718 5.1e-89 331.6 259 67.2
CiPaw.03G157200 Carya illinoinensis HOM05D002897 ORTHO05D008718 2.6e-80 302.8 257 61.1
Cfa014332 Carpinus fangiana HOM05D002897 ORTHO05D008718 9.7e-80 300.8 256 62.5
MELO3C018838.2 Cucumis melo HOM05D002897 ORTHO05D008718 4.8e-79 298.5 256 60.5
RcHm_v2.0_Chr2g0158471 Rosa chinensis HOM05D002897 ORTHO05D008718 1.2e-77 293.9 251 60.2
ClCG02G002140 Citrullus lanatus HOM05D002897 ORTHO05D008718 4.5e-77 292.0 256 60.2
Sed0013072 Sechium edule HOM05D002897 ORTHO05D008718 1.0e-76 290.8 254 60.6
Haze_12787 Corylus avellana HOM05D002897 ORTHO05D008718 1.3e-76 290.4 276 57.2
QL08p031170 Quercus lobata HOM05D002897 ORTHO05D008718 1.3e-76 290.4 256 58.6
FAN05G4893 Fragaria x ananassa HOM05D002897 ORTHO05D008718 3.8e-76 288.9 251 60.6
CsaV3_7G003360 Cucumis sativus L. HOM05D002897 ORTHO05D008718 5.0e-76 288.5 256 59.0
Prupe.3G212700 Prunus persica HOM05D002897 ORTHO05D008718 8.5e-76 287.7 257 59.9
Duzib138G1172 Durio zibethinus HOM05D002897 ORTHO05D008718 1.1e-75 287.3 250 61.2
TAR624G0001 Trochodendron aralioides HOM05D002897 ORTHO05D008718 1.1e-75 287.3 255 60.4
GSVIVG01030483001 Vitis vinifera HOM05D002897 ORTHO05D008718 1.1e-75 287.3 253 57.3
FAN02G2770 Fragaria x ananassa HOM05D002897 ORTHO05D008718 1.9e-75 286.6 251 59.8
Solyc07g049200.4 Solanum lycopersicum HOM05D002897 ORTHO05D008718 4.2e-75 285.4 254 58.3
Thecc.01G180000 Theobroma cacao HOM05D002897 ORTHO05D008718 4.2e-75 285.4 252 59.9
FvH4_6g42620 Fragaria vesca HOM05D002897 ORTHO05D008718 5.5e-75 285.0 251 59.4
Hma1.2p1_2044F.1_g312350 Hydrangea macrophylla HOM05D002897 ORTHO05D008718 5.5e-75 285.0 261 57.5
Actinidia09731 Actinidia chinensis HOM05D002897 ORTHO05D008718 7.2e-75 284.6 253 59.7
Nitab4.5_0012091g0010 Nicotiana tabacum HOM05D002897 ORTHO05D008718 9.4e-75 284.3 250 59.2
Manes.13G067750 Manihot esculenta HOM05D002897 ORTHO05D008718 1.2e-74 283.9 253 59.7
Manes.13G067751 Manihot esculenta HOM05D002897 ORTHO05D008718 1.2e-74 283.9 253 59.7
Nn1g07262 Nelumbo nucifera HOM05D002897 ORTHO05D008718 1.6e-74 283.5 257 58.0
Sopen07g025210 Solanum pennellii HOM05D002897 ORTHO05D008718 1.6e-74 283.5 253 58.9
PGSC0003DMG400000696 Solanum tuberosum HOM05D002897 ORTHO05D008718 1.6e-74 283.5 254 57.9
TWI18G1283 Tripterygium wilfordii HOM05D002897 ORTHO05D008718 2.7e-74 282.7 258 58.5
Peaxi162Scf00921g00023 Petunia axillaris HOM05D002897 ORTHO05D008718 4.7e-74 282.0 256 58.2
Potri.014G156700 Populus trichocarpa HOM05D002897 ORTHO05D008718 6.1e-74 281.6 256 59.4
CSS0022002 Camellia sinensis var. sinensis HOM05D002897 ORTHO05D008718 7.9e-74 281.2 253 59.3
Gorai.007G171100 Gossypium raimondii HOM05D002897 ORTHO05D008718 7.9e-74 281.2 257 58.8
Gohir.D11G160500 Gossypium hirsutum HOM05D002897 ORTHO05D008718 2.3e-73 279.6 257 58.4
Ciclev10016301m.g Citrus clementina HOM05D002897 ORTHO05D008718 8.8e-73 277.7 264 58.0
Sabra14G0118500 Salix brachista HOM05D002897 ORTHO05D008718 1.5e-72 276.9 255 58.4
Gohir.A11G153700 Gossypium hirsutum HOM05D002897 ORTHO05D008718 5.7e-72 275.0 251 57.8
Nitab4.5_0000482g0070 Nicotiana tabacum HOM05D002897 ORTHO05D008718 5.7e-72 275.0 255 58.0
Cpa.g.sc132.3 Carica papaya HOM05D002897 ORTHO05D008718 7.4e-72 274.6 252 57.1
THA.LOC104826141 Tarenaya hassleriana HOM05D002897 ORTHO05D008718 7.4e-72 274.6 252 57.5
vmacro12177 Vaccinium macrocarpon HOM05D002897 ORTHO05D008718 7.4e-72 274.6 251 57.8
Rhsim06G0166000 Rhododendron simsii HOM05D002897 ORTHO05D008718 1.3e-71 273.9 264 56.8
Aqoxy1G03476 Aquilegia oxysepala HOM05D002897 ORTHO05D008718 2.8e-71 272.7 259 57.1
SalBow1G3579 Salvia bowleyana HOM05D002897 ORTHO05D008718 8.2e-71 271.2 259 56.4
AT1G05060 Arabidopsis thaliana HOM05D002897 ORTHO05D008718 1.4e-70 270.4 258 55.8
Thhalv10008572m.g Eutrema salsugineum HOM05D002897 ORTHO05D008718 1.4e-70 270.4 253 55.3
Carub.0001s0433 Capsella rubella HOM05D002897 ORTHO05D008718 2.4e-70 269.6 254 55.5
Migut.H01234 Erythranthe guttata HOM05D002897 ORTHO05D008718 2.4e-70 269.6 265 54.7
SalBow1G2496 Salvia bowleyana HOM05D002897 ORTHO05D008718 4.1e-70 268.9 260 56.2
Atru.chr6.3235 Acer truncatum HOM05D002897 ORTHO05D008718 5.3e-70 268.5 257 56.8
BcaB07g32946 Brassica carinata HOM05D002897 ORTHO05D008718 5.3e-70 268.5 253 54.9
Sp1g03930 Schrenkiella parvula HOM05D002897 ORTHO05D008718 3.5e-69 265.8 253 55.7
AL1G14810 Arabidopsis lyrata HOM05D002897 ORTHO05D008718 4.5e-69 265.4 255 55.3
Oeu051891.2 Olea europaea HOM05D002897 ORTHO05D008718 7.7e-69 264.6 281 53.7
MSTRG.14141 Avicennia marina HOM05D002897 ORTHO05D008718 1.7e-68 263.5 256 53.9
SGA_v2.0_scaffold49G18345 Striga asiatica HOM05D002897 ORTHO05D008718 2.9e-68 262.7 258 54.3
AUR62035641 Chenopodium quinoa HOM05D002897 ORTHO05D008718 3.8e-68 262.3 253 55.7
Dinv39736 Davidia involucrata HOM05D002897 ORTHO05D008718 5.0e-68 261.9 257 55.6
Cc05_g03270 Coffea canephora HOM05D002897 ORTHO05D008718 6.5e-68 261.5 253 54.2
Sc06g0009610 Simmondsia chinensis HOM05D002897 ORTHO05D008718 6.5e-68 261.5 258 54.3
BraA09t38920Z Brassica rapa HOM05D002897 ORTHO05D008718 1.9e-67 260.0 252 54.0
HanXRQChr12g0373611 Helianthus annuus HOM05D002897 ORTHO05D008718 1.9e-67 260.0 254 53.9
BolC5t31920H Brassica oleracea HOM05D002897 ORTHO05D008718 4.2e-67 258.8 256 53.1
AUR62017163 Chenopodium quinoa HOM05D002897 ORTHO05D008718 5.5e-67 258.5 251 55.8
ECA234G1553 Erigeron canadensis HOM05D002897 ORTHO05D008718 5.5e-67 258.5 253 54.9
BcaC05g27288 Brassica carinata HOM05D002897 ORTHO05D008718 7.2e-67 258.1 253 53.8
Eucgr.A01101 Eucalyptus grandis HOM05D002897 ORTHO05D008718 2.7e-66 256.1 266 53.0
Lsat_1_v5_gn_5_123640 Lactuca sativa HOM05D002897 ORTHO05D008718 3.6e-66 255.8 258 52.7
CARHR004510 Cardamine hirsuta HOM05D002897 ORTHO05D008718 3.0e-65 252.7 258 52.7
Lj8C128G4 Lonicera japonica HOM05D002897 ORTHO05D008718 6.7e-65 251.5 254 55.1
Hma1.2p1_1986F.1_g310090 Hydrangea macrophylla HOM05D002897 ORTHO05D008718 1.5e-64 250.4 207 58.0
EL10Ac4g07512 Beta vulgaris HOM05D002897 ORTHO05D008718 7.5e-64 248.1 263 51.3
CDE07G0516 Ceratophyllum demersum HOM05D002897 ORTHO05D008718 7.5e-64 248.1 255 53.7
A09p33710 Brassica napus HOM05D002897 ORTHO05D008718 2.8e-63 246.1 277 49.1
MD17G1102200 Malus domestica HOM05D002897 ORTHO05D008718 8.2e-63 244.6 212 60.8
C05p31940 Brassica napus HOM05D002897 ORTHO05D008718 1.1e-62 244.2 281 48.0
MBI19_g24999_MAGBIO Magnolia biondii HOM05D002897 ORTHO05D008718 2.2e-60 236.5 258 51.2
Aqoxy1G03469 Aquilegia oxysepala HOM05D002897 ORTHO05D008718 6.5e-60 235.0 260 50.8
Os06g0239700 Oryza sativa ssp. japonica HOM05D002897 ORTHO05D008718 4.2e-59 232.3 251 49.0
Zm00001eb280010 Zea mays HOM05D002897 ORTHO05D008718 1.8e-57 226.9 252 50.4
PSO210G2604 Papaver somniferum HOM05D002897 ORTHO05D008718 5.7e-56 221.9 256 48.8
Aa31LG1G19710 Aethionema arabicum HOM05D002897 ORTHO05D008718 3.1e-54 216.1 303 43.2
Hma1.2p1_2044F.1_g312360 Hydrangea macrophylla HOM05D002897 ORTHO05D008718 1.2e-53 214.2 201 59.7
FAN14G2576 Fragaria x ananassa HOM05D002897 ORTHO05D008718 3.0e-49 199.5 251 47.4
DCAR_012931 Daucus carota HOM05D002897 ORTHO05D008718 8.9e-49 198.0 255 46.7
HPP92_017354 Vanilla planifolia HOM05D002897 ORTHO05D008718 2.8e-47 193.0 249 46.2
unitig_21.g21003 Utricularia gibba HOM05D002897 ORTHO05D008718 3.3e-43 179.5 158 57.0
COL.COLO4_21853 Corchorus olitorius HOM05D002897 ORTHO05D008718 3.4e-40 169.5 156 61.5
SEGI_41028 Sequoiadendron giganteum HOM05D002897 ORTHO05D008718 2.9e-39 166.4 243 42.0
AagrBONN_evm.TU.Sc2ySwM_117.2821 Anthoceros agrestis HOM05D002897 ORTHO05D008718 2.8e-34 149.8 251 38.2
CSS0034853 Camellia sinensis var. sinensis HOM05D002897 ORTHO05D008718 2.0e-32 143.7 172 47.7
Pp3c23_20260 Physcomitrium patens HOM05D002897 ORTHO05D008718 5.8e-32 142.1 268 36.9
ATR0059G011 Amborella trichopoda HOM05D002897 ORTHO05D008718 1.5e-27 127.5 141 53.9
MD06G1049400 Malus domestica HOM05D002897 ORTHO05D008718 6.6e-20 102.1 128 50.8
ATR0059G040 Amborella trichopoda HOM05D002897 ORTHO05D008718 4.9e-15 85.9 92 42.4
CANSAT64G1786 Cannabis sativa HOM05D002897 ORTHO05D008718 2.7e-13 80.1 63 57.1
SMO290G0011 Selaginella moellendorffii HOM05D013342 ORTHO05D008718 8.7e-12 75.1 223 27.4
SMO356G0703 Selaginella moellendorffii HOM05D013342 ORTHO05D008718 1.1e-11 74.7 223 27.8
Aa31sc72G10 Aethionema arabicum HOM05D002897 ORTHO05D008718 9.9e-08 61.6 123 35.0
BolC6t39233H Brassica oleracea HOM05D002897 ORTHO05D008718 1.4e-06 57.8 45 51.1


User provided reference genes

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