Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_06108_v3 Cicer arietinum L. HOM05D001026 ORTHO05D005232 0.0e+00 1991.1 1009 100.0
Psat2g022120 Pisum sativum HOM05D001026 ORTHO05D005232 0.0e+00 1684.1 1042 82.7
Medtr5g085880 Medicago truncatula HOM05D001026 ORTHO05D005232 0.0e+00 1651.7 1041 81.7
TPR.G14449 Trifolium pratense HOM05D001026 ORTHO05D005232 0.0e+00 1602.4 1055 80.4
LjContig00564g0017936 Lotus japonicus HOM05D001026 ORTHO05D005232 0.0e+00 1536.9 1042 77.1
Lalb_Chr17g0347341 Lupinus albus HOM05D001026 ORTHO05D005232 0.0e+00 1482.2 1041 74.2
Medtr3g080120 Medicago truncatula HOM05D001026 ORTHO05D005232 0.0e+00 1437.9 1041 72.0
Lalb_Chr18g0048141 Lupinus albus HOM05D001026 ORTHO05D005232 0.0e+00 1425.6 1042 70.9
Psat5g110840 Pisum sativum HOM05D001026 ORTHO05D005232 0.0e+00 1425.2 1041 71.5
Lj6g0009212 Lotus japonicus HOM05D001026 ORTHO05D005232 0.0e+00 1417.1 1037 71.4
Ca_16276_v3 Cicer arietinum L. HOM05D001026 ORTHO05D005232 0.0e+00 1415.2 1042 70.9
TPR.G34506 Trifolium pratense HOM05D001026 ORTHO05D005232 0.0e+00 1395.9 1043 70.9
Phvul.L003337 Phaseolus vulgaris HOM05D001026 ORTHO05D005232 0.0e+00 1366.7 1042 69.1
Glyma.13G027300 Glycine max HOM05D001026 ORTHO05D005232 0.0e+00 1362.4 1002 71.0
QL02p002343 Quercus lobata HOM05D001026 ORTHO05D005232 0.0e+00 1355.9 1041 68.0
CiPaw.15G045700 Carya illinoinensis HOM05D001026 ORTHO05D005232 0.0e+00 1349.7 1042 66.9
TAR381G1087 Trochodendron aralioides HOM05D001026 ORTHO05D005232 0.0e+00 1343.2 1037 66.2
Potri.002G100800 Populus trichocarpa HOM05D001026 ORTHO05D005232 0.0e+00 1342.8 1043 66.7
VMungo0540G1065 Vigna mungo HOM05D001026 ORTHO05D005232 0.0e+00 1341.3 1116 65.0
Atru.chr13.1116 Acer truncatum HOM05D001026 ORTHO05D005232 0.0e+00 1334.7 1043 66.3
Sabra02G0079000 Salix brachista HOM05D001026 ORTHO05D005232 0.0e+00 1332.0 1043 66.3
FAN18G1967 Fragaria x ananassa HOM05D001026 ORTHO05D005232 0.0e+00 1328.2 1038 65.3
Glyma.02G270100 Glycine max HOM05D001026 ORTHO05D005232 0.0e+00 1327.8 1043 68.5
Prupe.1G523400 Prunus persica HOM05D001026 ORTHO05D005232 0.0e+00 1327.8 1036 66.3
FAN08G3634 Fragaria x ananassa HOM05D001026 ORTHO05D005232 0.0e+00 1325.8 1038 65.2
VMungo0647G2280 Vigna mungo HOM05D001026 ORTHO05D005232 0.0e+00 1325.1 1068 68.2
Ciclev10000130m.g Citrus clementina HOM05D001026 ORTHO05D005232 0.0e+00 1322.0 1053 65.6
Gohir.A03G045800 Gossypium hirsutum HOM05D001026 ORTHO05D005232 0.0e+00 1320.1 1049 64.6
RcHm_v2.0_Chr7g0238491 Rosa chinensis HOM05D001026 ORTHO05D005232 0.0e+00 1319.7 1039 65.9
FvH4_5g36450 Fragaria vesca HOM05D001026 ORTHO05D005232 0.0e+00 1317.0 1037 64.9
TWI56G0493 Tripterygium wilfordii HOM05D001026 ORTHO05D005232 0.0e+00 1315.8 1046 65.6
FAN04G2218 Fragaria x ananassa HOM05D001026 ORTHO05D005232 0.0e+00 1314.3 1047 64.7
Gohir.D03G121400 Gossypium hirsutum HOM05D001026 ORTHO05D005232 0.0e+00 1314.3 1049 64.4
Gorai.003G128400 Gossypium raimondii HOM05D001026 ORTHO05D005232 0.0e+00 1313.1 1049 64.3
Thecc.08G101700 Theobroma cacao HOM05D001026 ORTHO05D005232 0.0e+00 1312.7 1047 65.8
MD08G1188800 Malus domestica HOM05D001026 ORTHO05D005232 0.0e+00 1310.0 1039 65.2
FAN13G1430 Fragaria x ananassa HOM05D001026 ORTHO05D005232 0.0e+00 1308.9 1038 64.8
Manes.02G148900 Manihot esculenta HOM05D001026 ORTHO05D005232 0.0e+00 1304.3 1043 65.3
Nn7g37838 Nelumbo nucifera HOM05D001026 ORTHO05D005232 0.0e+00 1302.7 1039 65.3
Eucgr.B00041 Eucalyptus grandis HOM05D001026 ORTHO05D005232 0.0e+00 1300.8 1043 64.7
vmacro21290 Vaccinium macrocarpon HOM05D001026 ORTHO05D005232 0.0e+00 1300.8 1039 64.8
Manes.18G063378 Manihot esculenta HOM05D001026 ORTHO05D005232 0.0e+00 1298.9 1043 66.3
Cfa017894 Carpinus fangiana HOM05D001026 ORTHO05D005232 0.0e+00 1297.7 998 67.0
CANSAT64G2709 Cannabis sativa HOM05D001026 ORTHO05D005232 0.0e+00 1293.1 1052 65.6
Phvul.008G211900 Phaseolus vulgaris HOM05D001026 ORTHO05D005232 0.0e+00 1287.3 1045 67.3
Rhsim06G0077700 Rhododendron simsii HOM05D001026 ORTHO05D005232 0.0e+00 1286.6 1045 64.0
Cc10_g06660 Coffea canephora HOM05D001026 ORTHO05D005232 0.0e+00 1281.9 1042 63.7
COL.COLO4_12005 Corchorus olitorius HOM05D001026 ORTHO05D005232 0.0e+00 1280.8 1054 64.2
Duzib041G0801 Durio zibethinus HOM05D001026 ORTHO05D005232 0.0e+00 1279.6 1049 64.2
Hma1.2p1_0593F.1_g185750 Hydrangea macrophylla HOM05D001026 ORTHO05D005232 0.0e+00 1278.1 1041 63.7
THA.LOC104816596 Tarenaya hassleriana HOM05D001026 ORTHO05D005232 0.0e+00 1273.8 1047 63.4
CsaV3_3G047720 Cucumis sativus L. HOM05D001026 ORTHO05D005232 0.0e+00 1268.1 1043 63.3
Sed0011558 Sechium edule HOM05D001026 ORTHO05D005232 0.0e+00 1268.1 1045 64.4
GSVIVG01009085001 Vitis vinifera HOM05D001026 ORTHO05D005232 0.0e+00 1268.1 1043 64.0
arahy.Tifrunner.gnm1.ann1.1274C3 Arachis hypogaea HOM05D001026 ORTHO05D005232 0.0e+00 1264.2 1175 58.9
Oeu029742.2 Olea europaea HOM05D001026 ORTHO05D005232 0.0e+00 1248.8 1048 61.9
arahy.Tifrunner.gnm1.ann1.H5V4Y1 Arachis hypogaea HOM05D001026 ORTHO05D005232 0.0e+00 1248.4 1037 64.7
Aqoxy6G00082 Aquilegia oxysepala HOM05D001026 ORTHO05D005232 0.0e+00 1246.1 1038 63.6
arahy.Tifrunner.gnm1.ann1.SJ0MJA Arachis hypogaea HOM05D001026 ORTHO05D005232 0.0e+00 1245.0 1037 64.5
MSTRG.24986 Avicennia marina HOM05D001026 ORTHO05D005232 0.0e+00 1245.0 1044 62.4
Thhalv10006673m.g Eutrema salsugineum HOM05D001026 ORTHO05D005232 0.0e+00 1244.2 1051 61.8
arahy.Tifrunner.gnm1.ann1.Z84UIM Arachis hypogaea HOM05D001026 ORTHO05D005232 0.0e+00 1243.4 1208 57.0
Carub.0001s3287 Capsella rubella HOM05D001026 ORTHO05D005232 0.0e+00 1243.0 1047 62.7
Solyc04g074720.3 Solanum lycopersicum HOM05D001026 ORTHO05D005232 0.0e+00 1243.0 1039 62.8
BolC7t42122H Brassica oleracea HOM05D001026 ORTHO05D005232 0.0e+00 1242.3 1050 62.4
BraA07t28862Z Brassica rapa HOM05D001026 ORTHO05D005232 0.0e+00 1241.5 1045 62.6
C07p16280 Brassica napus HOM05D001026 ORTHO05D005232 0.0e+00 1240.7 1050 62.3
Sopen04g029690 Solanum pennellii HOM05D001026 ORTHO05D005232 0.0e+00 1239.6 1037 62.7
MBI06_g22313_MAGBIO Magnolia biondii HOM05D001026 ORTHO05D005232 0.0e+00 1238.4 1083 61.0
A07p10680 Brassica napus HOM05D001026 ORTHO05D005232 0.0e+00 1236.9 1045 62.5
BcaB03g13886 Brassica carinata HOM05D001026 ORTHO05D005232 0.0e+00 1236.5 1046 62.0
BcaC06g35430 Brassica carinata HOM05D001026 ORTHO05D005232 0.0e+00 1234.9 1050 62.1
CAN.G1173.1 Capsicum annuum HOM05D001026 ORTHO05D005232 0.0e+00 1234.9 1042 62.5
Sp1g25380 Schrenkiella parvula HOM05D001026 ORTHO05D005232 0.0e+00 1233.4 1051 61.7
Sed0018981 Sechium edule HOM05D001026 ORTHO05D005232 0.0e+00 1233.0 1043 62.6
AT1G35220 Arabidopsis thaliana HOM05D001026 ORTHO05D005232 0.0e+00 1232.2 1047 62.4
ClCG11G014330 Citrullus lanatus HOM05D001026 ORTHO05D005232 0.0e+00 1231.1 1032 62.8
CARHR286320 Cardamine hirsuta HOM05D001026 ORTHO05D005232 0.0e+00 1230.3 1046 61.3
PSO700G0312 Papaver somniferum HOM05D001026 ORTHO05D005232 0.0e+00 1229.2 1054 62.5
PSO447G0261 Papaver somniferum HOM05D001026 ORTHO05D005232 0.0e+00 1226.1 1056 61.8
Aa31LG6G8880 Aethionema arabicum HOM05D001026 ORTHO05D005232 0.0e+00 1224.9 1044 61.5
Dinv07074 Davidia involucrata HOM05D001026 ORTHO05D005232 0.0e+00 1223.8 961 66.4
Nitab4.5_0005108g0010 Nicotiana tabacum HOM05D001026 ORTHO05D005232 0.0e+00 1223.4 1004 64.4
AL1G49940 Arabidopsis lyrata HOM05D001026 ORTHO05D005232 0.0e+00 1223.0 1053 60.9
Migut.C00225 Erythranthe guttata HOM05D001026 ORTHO05D005232 0.0e+00 1222.6 1046 62.0
SalBow7G3028 Salvia bowleyana HOM05D001026 ORTHO05D005232 0.0e+00 1216.1 1047 61.2
Peaxi162Scf00030g02517 Petunia axillaris HOM05D001026 ORTHO05D005232 0.0e+00 1210.3 1066 60.5
SGA_v2.0_scaffold74G24568 Striga asiatica HOM05D001026 ORTHO05D005232 0.0e+00 1209.5 1049 61.4
Nitab4.5_0000786g0020 Nicotiana tabacum HOM05D001026 ORTHO05D005232 0.0e+00 1207.2 984 64.2
Sc01g0000810 Simmondsia chinensis HOM05D001026 ORTHO05D005232 0.0e+00 1201.8 1057 60.5
DCAR_009580 Daucus carota HOM05D001026 ORTHO05D005232 0.0e+00 1174.8 1049 59.2
Lj4C96G17 Lonicera japonica HOM05D001026 ORTHO05D005232 0.0e+00 1166.4 1047 59.9
Ah.05g169670 Amaranthus hybridus HOM05D001026 ORTHO05D005232 0.0e+00 1164.8 1054 58.8
MELO3C003550.2 Cucumis melo HOM05D001026 ORTHO05D005232 0.0e+00 1157.9 1142 55.5
EL10Ac1g01144 Beta vulgaris HOM05D001026 ORTHO05D005232 0.0e+00 1156.7 1047 58.4
Lsat_1_v5_gn_9_73921 Lactuca sativa HOM05D001026 ORTHO05D005232 0.0e+00 1154.8 1037 59.2
Solyc12g057130.3 Solanum lycopersicum HOM05D001026 ORTHO05D005232 0.0e+00 1154.0 1044 59.4
Gorai.010G037700 Gossypium raimondii HOM05D001026 ORTHO05D005232 0.0e+00 1132.5 1013 59.2
HanXRQChr09g0248911 Helianthus annuus HOM05D001026 ORTHO05D005232 0.0e+00 1132.1 1045 58.9
ECA247G3686 Erigeron canadensis HOM05D001026 ORTHO05D005232 0.0e+00 1122.1 1048 58.6
HPP92_016948 Vanilla planifolia HOM05D001026 ORTHO05D005232 0.0e+00 1120.5 1053 58.6
ATR0684G075 Amborella trichopoda HOM05D001026 ORTHO05D005232 0.0e+00 1117.8 1007 59.8
Sopen12g029790 Solanum pennellii HOM05D001026 ORTHO05D005232 0.0e+00 1117.4 1000 60.1
Lsat_1_v5_gn_1_3061 Lactuca sativa HOM05D001026 ORTHO05D005232 0.0e+00 1116.7 1046 57.7
AUR62018974 Chenopodium quinoa HOM05D001026 ORTHO05D005232 0.0e+00 1112.8 1029 58.7
ECA232G4443 Erigeron canadensis HOM05D001026 ORTHO05D005232 0.0e+00 1085.1 978 59.4
PGSC0003DMG400017755 Solanum tuberosum HOM05D001026 ORTHO05D005232 0.0e+00 1082.8 1013 58.4
Gohir.D06G034200 Gossypium hirsutum HOM05D001026 ORTHO05D005232 1.8e-310 1069.3 950 59.9
HanXRQChr12g0379801 Helianthus annuus HOM05D001026 ORTHO05D005232 2.9e-308 1062.0 1038 55.7
Hund16887 Selenicereus undatus HOM05D001026 ORTHO05D005232 2.3e-305 1052.4 1037 56.5
AUR62027815 Chenopodium quinoa HOM05D001026 ORTHO05D005232 6.6e-305 1050.8 1014 57.6
Os01g0303200 Oryza sativa ssp. japonica HOM05D001026 ORTHO05D005232 9.5e-304 1047.0 1039 54.4
CSS0035277 Camellia sinensis var. sinensis HOM05D001026 ORTHO05D005232 6.2e-303 1044.3 894 61.9
Zm00001eb288650 Zea mays HOM05D001026 ORTHO05D005232 5.6e-296 1021.1 1051 53.1
Os05g0355133 Oryza sativa ssp. japonica HOM05D001026 ORTHO05D005232 5.8e-293 1011.1 1050 52.2
Zm00001eb130190 Zea mays HOM05D001026 ORTHO05D005232 1.1e-283 980.3 967 54.3
unitig_46.g17923 Utricularia gibba HOM05D001026 ORTHO05D005232 6.0e-282 974.5 933 58.3
Actinidia30796 Actinidia chinensis HOM05D001026 ORTHO05D005232 7.9e-282 974.2 1022 54.0
Gohir.A06G033300 Gossypium hirsutum HOM05D001026 ORTHO05D005232 5.8e-277 958.0 893 57.8
MD15G1376700 Malus domestica HOM05D001026 ORTHO05D005232 3.8e-276 955.3 814 61.8
CDE10G1069 Ceratophyllum demersum HOM05D001026 ORTHO05D005232 3.7e-271 938.7 955 55.0
Hund26991 Selenicereus undatus HOM05D001026 ORTHO05D005232 6.1e-242 841.6 785 58.9
Glyma.20G056500 Glycine max HOM05D001026 ORTHO05D005232 5.2e-241 838.6 646 68.6
Mapoly0104s0038 Marchantia polymorpha HOM05D001026 ORTHO05D005232 4.4e-240 835.5 1070 46.4
Zm00001eb286080 Zea mays HOM05D001026 ORTHO05D005232 2.2e-231 806.6 909 50.8
Dinv05859 Davidia involucrata HOM05D001026 ORTHO05D005232 3.7e-231 805.8 634 64.5
AagrBONN_evm.TU.Sc2ySwM_228.1520 Anthoceros agrestis HOM05D001026 ORTHO05D005232 1.4e-230 803.9 1063 44.4
Haze_18258 Corylus avellana HOM05D001026 ORTHO05D005232 2.4e-230 803.1 632 66.0
SMO356G0157 Selaginella moellendorffii HOM05D001026 ORTHO05D005232 1.1e-219 767.7 1034 43.5
Pp3c2_15510 Physcomitrium patens HOM05D001026 ORTHO05D005232 2.1e-210 736.9 1062 42.0
Pp3c1_27170 Physcomitrium patens HOM05D001026 ORTHO05D005232 5.4e-206 722.2 1058 41.5
Peaxi162Scf00571g00528 Petunia axillaris HOM05D001026 ORTHO05D005232 1.7e-204 717.2 630 59.4
CBR_g5699 Chara braunii HOM05D001026 ORTHO05D005232 8.9e-193 678.3 1249 37.9
SMO134G0184 Selaginella moellendorffii HOM05D001026 ORTHO05D005232 1.7e-188 664.1 965 39.9
Glyma.20G056600 Glycine max HOM05D001026 ORTHO05D005232 7.1e-166 589.0 417 72.4
Psat0s5307g0040 Pisum sativum HOM05D001026 ORTHO05D005232 6.9e-161 572.4 453 68.9
Psat4g114320 Pisum sativum HOM05D001026 ORTHO05D005232 3.4e-160 570.1 488 65.0
Manes.18G025208 Manihot esculenta HOM05D001026 ORTHO05D005232 1.3e-156 558.1 383 73.9
SEGI_18178 Sequoiadendron giganteum HOM05D001026 ORTHO05D005232 2.1e-141 507.7 551 50.1
Dinv05858 Davidia involucrata HOM05D001026 ORTHO05D005232 1.7e-138 498.0 382 68.1
SHI20583 Sapria himalayana HOM05D001026 ORTHO05D005232 1.8e-124 451.4 555 46.8
Psat3g111360 Pisum sativum HOM05D001026 ORTHO05D005232 1.8e-97 361.7 275 69.1
MD15G1376600 Malus domestica HOM05D001026 ORTHO05D005232 1.7e-95 355.1 192 85.4
arahy.Tifrunner.gnm1.ann1.WH8Y2A Arachis hypogaea HOM05D001026 ORTHO05D005232 4.4e-91 340.5 256 69.9
Psat1g107360 Pisum sativum HOM05D001026 ORTHO05D005232 4.3e-86 323.9 261 67.4
Haze_18259 Corylus avellana HOM05D001026 ORTHO05D005232 4.6e-80 303.9 263 62.7
Psat0s2339g0080 Pisum sativum HOM05D001026 ORTHO05D005232 2.5e-70 271.6 310 56.1
Haze_18261 Corylus avellana HOM05D001026 ORTHO05D005232 3.3e-70 271.2 162 77.2
Psat0s3076g0120 Pisum sativum HOM05D003435 ORTHO05D004032 1.2e-69 269.2 335 51.0
Hund26990 Selenicereus undatus HOM05D001026 ORTHO05D005232 1.1e-68 266.2 150 81.3
Cre10.g457150 Chlamydomonas reinhardtii HOM05D001026 ORTHO05D005232 7.6e-67 260.0 858 26.7
Psat7g123360 Pisum sativum HOM05D002169 ORTHO05D006577 9.2e-65 253.1 173 68.8
SHI20581 Sapria himalayana HOM05D001026 ORTHO05D005232 1.2e-61 242.7 265 50.9
QL02p059881 Quercus lobata HOM05D001026 ORTHO05D005232 1.7e-50 205.7 147 74.8
SHI20572 Sapria himalayana HOM05D001026 ORTHO05D005232 3.4e-43 181.4 114 71.1
PRCOL_00002948 Prasinoderma coloniale HOM05D001026 ORTHO05D005232 1.2e-40 172.9 500 29.4
Psat0s3521g0080 Pisum sativum HOM05D000555 ORTHO05D001906 3.0e-39 168.3 134 64.9
Psat4g129920 Pisum sativum HOM05D003435 ORTHO05D004032 8.7e-39 166.8 203 48.8
Psat4g066520 Pisum sativum HOM05D001026 ORTHO05D007418 5.8e-35 154.1 126 64.3
Psat3g007920 Pisum sativum HOM05D001026 ORTHO05D005232 1.0e-31 143.3 136 60.3
SEGI_36321 Sequoiadendron giganteum HOM05D001026 ORTHO05D005232 7.4e-30 137.1 88 68.2
Psat3g111480 Pisum sativum HOM05D001026 ORTHO05D008599 3.1e-28 131.7 120 63.3
HPP92_016951 Vanilla planifolia HOM05D001026 ORTHO05D005232 2.7e-24 118.6 77 67.5
SEGI_27036 Sequoiadendron giganteum HOM05D001026 ORTHO05D005232 5.3e-20 104.4 92 53.3
Psat0s1135g0080 Pisum sativum HOM05D001026 ORTHO05D005232 4.5e-19 101.3 106 51.9
Psat4g159480 Pisum sativum HOM05D002169 ORTHO05D006577 1.7e-18 99.4 77 58.4
CDE10G0833 Ceratophyllum demersum HOM05D001026 ORTHO05D023993 4.7e-16 91.3 79 59.5
Psat0s3199g0080 Pisum sativum HOM05D000071 ORTHO05D022797 2.6e-14 85.5 79 59.5
SHI20575 Sapria himalayana HOM05D001026 ORTHO05D005232 1.5e-11 76.3 46 78.3
AagrBONN_evm.TU.Sc2ySwM_368.2118 Anthoceros agrestis HOM05D001026 ORTHO05D005232 5.9e-11 74.3 50 70.0
BcaC05g26968 Brassica carinata HOM05D001026 ORTHO05D023993 2.2e-10 72.4 77 49.4
C05p28240 Brassica napus HOM05D001026 ORTHO05D023993 2.2e-10 72.4 77 49.4
BolC5t31548H Brassica oleracea HOM05D001026 ORTHO05D023993 2.2e-10 72.4 77 49.4


User provided reference genes

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