Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_06086_v3 Cicer arietinum L. HOM05D004742 ORTHO05D005677 1.3e-117 426.4 223 100.0
TPR.G1023 Trifolium pratense HOM05D004742 ORTHO05D005677 3.1e-98 362.1 224 83.9
Medtr5g030210 Medicago truncatula HOM05D004742 ORTHO05D005677 9.7e-92 340.5 231 82.7
Medtr5g430370 Medicago truncatula HOM05D004742 ORTHO05D005677 9.7e-92 340.5 231 82.7
VMungo1215G1913 Vigna mungo HOM05D004742 ORTHO05D005677 8.5e-88 327.4 224 76.3
Phvul.002G140700 Phaseolus vulgaris HOM05D004742 ORTHO05D005677 1.4e-85 320.1 224 75.4
Glyma.01G017800 Glycine max HOM05D004742 ORTHO05D005677 5.7e-84 314.7 227 75.8
Glyma.09G205100 Glycine max HOM05D004742 ORTHO05D005677 9.8e-84 313.9 230 73.5
Psat2g136480 Pisum sativum HOM05D004742 ORTHO05D005677 3.1e-82 308.9 223 74.0
arahy.Tifrunner.gnm1.ann1.EZQY9P Arachis hypogaea HOM05D004742 ORTHO05D005677 9.8e-76 287.3 225 72.0
arahy.Tifrunner.gnm1.ann1.RMRK9P Arachis hypogaea HOM05D004742 ORTHO05D005677 9.8e-76 287.3 225 72.0
Lj2g0023551 Lotus japonicus HOM05D004742 ORTHO05D005677 4.1e-74 282.0 226 67.7
Lalb_Chr09g0325611 Lupinus albus HOM05D004742 ORTHO05D005677 9.2e-74 280.8 226 69.5
Dinv25223 Davidia involucrata HOM05D004742 ORTHO05D005677 3.6e-54 215.7 224 58.9
CANSAT21G2184 Cannabis sativa HOM05D004742 ORTHO05D005677 8.1e-54 214.5 229 56.3
QL12p005003 Quercus lobata HOM05D004742 ORTHO05D005677 2.2e-51 206.5 231 53.7
Cfa012451 Carpinus fangiana HOM05D004742 ORTHO05D005677 6.4e-51 204.9 226 54.4
Thecc.03G226400 Theobroma cacao HOM05D004742 ORTHO05D005677 8.3e-51 204.5 234 53.4
TWI60G1233 Tripterygium wilfordii HOM05D004742 ORTHO05D005677 1.1e-50 204.1 234 55.1
COL.COLO4_17015 Corchorus olitorius HOM05D004742 ORTHO05D005677 4.1e-50 202.2 229 54.6
Lalb_Chr16g0381321 Lupinus albus HOM05D004742 ORTHO05D005677 7.1e-50 201.4 211 58.8
Duzib205G0563 Durio zibethinus HOM05D004742 ORTHO05D005677 3.5e-49 199.1 232 53.9
Prupe.5G034500 Prunus persica HOM05D004742 ORTHO05D005677 3.5e-49 199.1 237 54.0
CiPaw.11G094200 Carya illinoinensis HOM05D004742 ORTHO05D005677 7.8e-49 198.0 236 51.3
Lsat_1_v5_gn_3_18001 Lactuca sativa HOM05D004742 ORTHO05D005677 1.0e-48 197.6 243 51.9
MELO3C027362.2 Cucumis melo HOM05D004742 ORTHO05D005677 1.9e-47 193.4 231 55.0
ClCG10G001520 Citrullus lanatus HOM05D004742 ORTHO05D005677 3.3e-47 192.6 236 54.7
PGSC0003DMG400017538 Solanum tuberosum HOM05D004742 ORTHO05D005677 4.3e-47 192.2 244 50.4
Gohir.A08G156100 Gossypium hirsutum HOM05D004742 ORTHO05D005677 5.6e-47 191.8 227 50.2
Nitab4.5_0010403g0010 Nicotiana tabacum HOM05D004742 ORTHO05D005677 5.6e-47 191.8 249 48.6
Sopen08g025400 Solanum pennellii HOM05D004742 ORTHO05D005677 1.2e-46 190.7 247 48.6
Duzib084G1225 Durio zibethinus HOM05D004742 ORTHO05D005677 4.7e-46 188.7 230 48.3
Solyc08g076870.1 Solanum lycopersicum HOM05D004742 ORTHO05D005677 4.7e-46 188.7 247 47.4
Manes.17G011300 Manihot esculenta HOM05D004742 ORTHO05D005677 6.2e-46 188.3 236 50.8
CSS0004262 Camellia sinensis var. sinensis HOM05D004742 ORTHO05D005677 1.8e-45 186.8 228 52.2
PGR031G2228 Punica granatum HOM05D004742 ORTHO05D005677 1.8e-45 186.8 247 51.4
CsaV3_3G001600 Cucumis sativus L. HOM05D004742 ORTHO05D005677 2.3e-45 186.4 236 52.1
Duzib084G0476 Durio zibethinus HOM05D004742 ORTHO05D005677 2.3e-45 186.4 228 46.1
FAN04G2756 Fragaria x ananassa HOM05D004742 ORTHO05D005677 4.0e-45 185.7 237 50.2
CSS0028083 Camellia sinensis var. sinensis HOM05D004742 ORTHO05D005677 6.8e-45 184.9 228 51.8
FvH4_5g22200 Fragaria vesca HOM05D004742 ORTHO05D005677 6.8e-45 184.9 237 48.5
Nn1g00114 Nelumbo nucifera HOM05D004742 ORTHO05D005677 6.8e-45 184.9 231 51.5
Haze_08216 Corylus avellana HOM05D004742 ORTHO05D005677 8.9e-45 184.5 223 47.1
FAN13G2654 Fragaria x ananassa HOM05D004742 ORTHO05D005677 8.9e-45 184.5 237 50.2
MD16G1273500 Malus domestica HOM05D004742 ORTHO05D005677 8.9e-45 184.5 240 51.2
Actinidia14802 Actinidia chinensis HOM05D004742 ORTHO05D005677 1.2e-44 184.1 222 53.6
FAN08G0406 Fragaria x ananassa HOM05D004742 ORTHO05D005677 1.5e-44 183.7 237 48.9
Hma1.2p1_0303F.1_g119030 Hydrangea macrophylla HOM05D004742 ORTHO05D005677 1.5e-44 183.7 231 53.7
RcHm_v2.0_Chr7g0209881 Rosa chinensis HOM05D004742 ORTHO05D005677 1.5e-44 183.7 240 51.7
Gohir.D08G176700 Gossypium hirsutum HOM05D004742 ORTHO05D005677 2.0e-44 183.3 226 49.1
Gorai.004G184600 Gossypium raimondii HOM05D004742 ORTHO05D005677 2.0e-44 183.3 226 49.1
FAN18G2180 Fragaria x ananassa HOM05D004742 ORTHO05D005677 3.4e-44 182.6 237 48.9
Gohir.A09G199100 Gossypium hirsutum HOM05D004742 ORTHO05D005677 4.4e-44 182.2 230 46.5
MD06G1035300 Malus domestica HOM05D004742 ORTHO05D005677 5.8e-44 181.8 242 50.8
CiPaw.12G064300 Carya illinoinensis HOM05D004742 ORTHO05D005677 1.7e-43 180.3 238 48.7
Eucgr.D02205 Eucalyptus grandis HOM05D004742 ORTHO05D005677 1.7e-43 180.3 231 53.7
Nitab4.5_0000529g0010 Nicotiana tabacum HOM05D004742 ORTHO05D005677 1.9e-42 176.8 254 44.9
Potri.001G141600 Populus trichocarpa HOM05D004742 ORTHO05D005677 2.4e-42 176.4 235 48.1
HanXRQChr17g0536221 Helianthus annuus HOM05D004742 ORTHO05D005677 4.1e-42 175.6 234 52.6
Sabra03G0062000 Salix brachista HOM05D004742 ORTHO05D001134 4.1e-42 175.6 216 47.2
Ah.12g055130 Amaranthus hybridus HOM05D004742 ORTHO05D005677 5.4e-42 175.3 223 50.2
Duzib068G0638 Durio zibethinus HOM05D004742 ORTHO05D005677 7.1e-42 174.9 226 49.1
TAR374G0395 Trochodendron aralioides HOM05D004742 ORTHO05D005677 7.1e-42 174.9 226 48.7
Lj3A410T15 Lonicera japonica HOM05D004742 ORTHO05D005677 9.2e-42 174.5 222 51.4
TAR636G0473 Trochodendron aralioides HOM05D004742 ORTHO05D005677 1.2e-41 174.1 223 50.7
Actinidia03372 Actinidia chinensis HOM05D004742 ORTHO05D005677 3.5e-41 172.6 242 50.0
CSS0042903 Camellia sinensis var. sinensis HOM05D004742 ORTHO05D005677 3.5e-41 172.6 225 47.1
Gohir.A11G030800 Gossypium hirsutum HOM05D004742 ORTHO05D005677 6.0e-41 171.8 233 48.9
Gorai.007G032300 Gossypium raimondii HOM05D004742 ORTHO05D005677 2.3e-40 169.9 226 44.2
Gorai.006G216900 Gossypium raimondii HOM05D004742 ORTHO05D005677 6.6e-40 168.3 228 47.8
Manes.15G188900 Manihot esculenta HOM05D004742 ORTHO05D005677 1.9e-39 166.8 233 49.4
Ciclev10016629m.g Citrus clementina HOM05D004742 ORTHO05D005677 7.3e-39 164.9 232 47.4
Gohir.D11G029500 Gossypium hirsutum HOM05D004742 ORTHO05D005677 7.3e-39 164.9 230 46.1
Rhsim07G0128300 Rhododendron simsii HOM05D004742 ORTHO05D005677 7.3e-39 164.9 221 49.3
Gohir.D09G193400 Gossypium hirsutum HOM05D004742 ORTHO05D005677 1.2e-38 164.1 228 46.9
Potri.003G092700 Populus trichocarpa HOM05D004742 ORTHO05D005677 3.6e-38 162.5 235 46.4
Atru.chr6.1683 Acer truncatum HOM05D004742 ORTHO05D005677 1.4e-37 160.6 229 46.3
THA.LOC104812742 Tarenaya hassleriana HOM05D004742 ORTHO05D005677 3.1e-37 159.5 239 45.2
Actinidia25968 Actinidia chinensis HOM05D004742 ORTHO05D005677 1.5e-36 157.1 246 46.7
THA.LOC104814447 Tarenaya hassleriana HOM05D004742 ORTHO05D005677 3.4e-36 156.0 241 43.2
SalBow6G3311 Salvia bowleyana HOM05D004742 ORTHO05D005677 5.8e-36 155.2 241 42.7
EL10Ac5g12098 Beta vulgaris HOM05D004742 ORTHO05D005677 7.6e-36 154.8 222 48.2
CSS0044674 Camellia sinensis var. sinensis HOM05D004742 ORTHO05D005677 8.4e-35 151.4 211 46.9
Lsat_1_v5_gn_6_421 Lactuca sativa HOM05D004742 ORTHO05D005677 3.2e-34 149.4 235 44.7
EL10Ac5g12097 Beta vulgaris HOM05D004742 ORTHO05D005677 2.1e-33 146.7 218 45.9
Oeu006253.1 Olea europaea HOM05D004742 ORTHO05D005677 2.7e-33 146.4 237 43.5
CARHR032080 Cardamine hirsuta HOM05D004742 ORTHO05D005677 6.0e-33 145.2 240 42.5
Thhalv10008795m.g Eutrema salsugineum HOM05D004742 ORTHO05D005677 1.3e-32 144.1 237 44.7
DCAR_008263 Daucus carota HOM05D004742 ORTHO05D005677 3.0e-32 142.9 259 40.2
TAR629G2541 Trochodendron aralioides HOM05D004742 ORTHO05D005677 6.6e-32 141.7 197 47.2
HanXRQChr06g0167541 Helianthus annuus HOM05D004742 ORTHO05D005677 8.7e-32 141.4 225 42.7
MSTRG.12162 Avicennia marina HOM05D004742 ORTHO05D005677 1.1e-31 141.0 235 39.6
DCAR_032208 Daucus carota HOM05D004742 ORTHO05D005677 3.3e-31 139.4 224 41.1
BcaB03g13715 Brassica carinata HOM05D004742 ORTHO05D005677 4.3e-31 139.0 232 45.7
Sp4g17420 Schrenkiella parvula HOM05D004742 ORTHO05D005677 5.6e-31 138.7 227 41.4
A05p24650 Brassica napus HOM05D004742 ORTHO05D005677 1.6e-30 137.1 233 44.2
BraA05t21351Z Brassica rapa HOM05D004742 ORTHO05D005677 1.6e-30 137.1 233 44.2
Hma1.2p1_0574F.1_g181490 Hydrangea macrophylla HOM05D004742 ORTHO05D005677 1.6e-30 137.1 273 41.0
Aa31LG2G13280 Aethionema arabicum HOM05D004742 ORTHO05D005677 2.1e-30 136.7 241 42.3
BcaC01g01725 Brassica carinata HOM05D004742 ORTHO05D005677 2.1e-30 136.7 239 41.4
C03p72460 Brassica napus HOM05D004742 ORTHO05D005677 2.1e-30 136.7 239 41.4
Migut.E00942 Erythranthe guttata HOM05D004742 ORTHO05D005677 2.1e-30 136.7 236 39.8
BolC3t19547H Brassica oleracea HOM05D004742 ORTHO05D005677 2.8e-30 136.3 239 41.4
AT1G32690 Arabidopsis thaliana HOM05D004742 ORTHO05D005677 1.1e-29 134.4 241 43.2
Sed0001883 Sechium edule HOM05D004742 ORTHO05D005677 1.4e-29 134.0 230 45.2
Aa31LG9G15210 Aethionema arabicum HOM05D004742 ORTHO05D005677 1.8e-29 133.7 233 37.8
BcaC05g27832 Brassica carinata HOM05D004742 ORTHO05D005677 1.8e-29 133.7 234 42.7
C05p38300 Brassica napus HOM05D004742 ORTHO05D005677 1.8e-29 133.7 234 42.7
BolC5t32562H Brassica oleracea HOM05D004742 ORTHO05D005677 1.8e-29 133.7 234 42.7
Carub.0001s3103 Capsella rubella HOM05D004742 ORTHO05D005677 3.1e-29 132.9 233 42.9
AL1G46920 Arabidopsis lyrata HOM05D004742 ORTHO05D005677 4.0e-29 132.5 242 42.1
Thhalv10017262m.g Eutrema salsugineum HOM05D004742 ORTHO05D005677 4.0e-29 132.5 224 40.2
Sp1g28270 Schrenkiella parvula HOM05D004742 ORTHO05D005677 1.2e-28 131.0 240 40.4
Carub.0004s1689 Capsella rubella HOM05D004742 ORTHO05D005677 8.4e-27 124.8 232 39.7
Rhsim11G0016100 Rhododendron simsii HOM05D004742 ORTHO05D005677 8.4e-27 124.8 203 45.8
Cc08_g02870 Coffea canephora HOM05D004742 ORTHO05D005677 2.4e-26 123.2 256 39.5
BcaC02g11593 Brassica carinata HOM05D004742 ORTHO05D005677 3.2e-26 122.9 222 38.7
SGA_v2.0_scaffold6G03142 Striga asiatica HOM05D004742 ORTHO05D005677 7.1e-26 121.7 232 39.7
SGA_v2.0_scaffold20G09271 Striga asiatica HOM05D004742 ORTHO05D005677 1.2e-25 120.9 228 36.4
Nitab4.5_0008566g0010 Nicotiana tabacum HOM05D004742 ORTHO05D005677 1.6e-25 120.6 216 38.4
Aqoxy3G02336 Aquilegia oxysepala HOM05D004742 ORTHO05D005677 6.0e-25 118.6 256 39.5
DCAR_004297 Daucus carota HOM05D004742 ORTHO05D005677 1.0e-24 117.9 227 37.9
A05p10550 Brassica napus HOM05D004742 ORTHO05D005677 1.3e-24 117.5 223 38.6
BraA05t19993Z Brassica rapa HOM05D004742 ORTHO05D005677 1.3e-24 117.5 223 38.6
C04p13600 Brassica napus HOM05D004742 ORTHO05D005677 5.1e-24 115.5 218 37.2
AL4G31210 Arabidopsis lyrata HOM05D004742 ORTHO05D005677 8.7e-24 114.8 224 36.2
BolC4t22951H Brassica oleracea HOM05D004742 ORTHO05D005677 1.9e-23 113.6 217 36.9
HanXRQChr12g0360911 Helianthus annuus HOM05D004742 ORTHO05D005677 3.3e-23 112.8 223 37.2
AT2G35200 Arabidopsis thaliana HOM05D004742 ORTHO05D005677 1.8e-21 107.1 225 37.3
MBI04_g25303_MAGBIO Magnolia biondii HOM05D004742 ORTHO05D005677 1.8e-21 107.1 216 38.9
CARHR129360 Cardamine hirsuta HOM05D004742 ORTHO05D005677 2.4e-21 106.7 224 35.3
TAR375G0192 Trochodendron aralioides HOM05D004742 ORTHO05D005677 5.3e-21 105.5 158 41.8
HPP92_014611 Vanilla planifolia HOM05D004742 ORTHO05D005677 6.9e-21 105.1 217 37.3
HPP92_020967 Vanilla planifolia HOM05D004742 ORTHO05D005677 6.9e-21 105.1 210 37.6
AUR62018706 Chenopodium quinoa HOM05D004742 ORTHO05D005677 2.9e-19 99.8 224 33.5
MBI04_g46668_MAGBIO Magnolia biondii HOM05D004742 ORTHO05D005677 1.4e-18 97.4 206 37.4
ECA233G6051 Erigeron canadensis HOM05D007880 ORTHO05D003386 1.2e-17 94.4 224 36.6
PSO210G7694 Papaver somniferum HOM05D004742 ORTHO05D005677 3.5e-17 92.8 246 32.1
CDE06G1944 Ceratophyllum demersum HOM05D003296 ORTHO05D003720 3.0e-16 89.7 217 38.2
Nitab4.5_0006434g0030 Nicotiana tabacum HOM05D004742 ORTHO05D005677 8.7e-16 88.2 214 35.0
Lj8P301T9 Lonicera japonica HOM05D004742 ORTHO05D005677 1.3e-14 84.3 142 45.1
ATR0665G540 Amborella trichopoda HOM05D004742 ORTHO05D005677 2.1e-14 83.6 231 31.6
Peaxi162Scf00045g00023 Petunia axillaris HOM05D004742 ORTHO05D005677 4.8e-14 82.4 182 35.2
PGSC0003DMG400017843 Solanum tuberosum HOM05D004742 ORTHO05D005677 4.0e-13 79.3 289 30.4
Zm00001eb251250 Zea mays HOM05D004742 ORTHO05D005677 5.3e-13 79.0 87 52.9
Solyc08g005090.2 Solanum lycopersicum HOM05D004742 ORTHO05D005677 6.9e-13 78.6 293 28.7
CDE11G0293 Ceratophyllum demersum HOM05D004742 ORTHO05D005677 9.0e-13 78.2 212 29.2
Sopen08g001110 Solanum pennellii HOM05D004742 ORTHO05D005677 2.6e-12 76.6 296 28.7
CDE03G0209 Ceratophyllum demersum HOM05D004742 ORTHO05D005677 2.2e-11 73.6 166 36.1
Os04g0591300 Oryza sativa ssp. japonica HOM05D004742 ORTHO05D005677 1.1e-10 71.2 203 35.0
AUR62007299 Chenopodium quinoa HOM05D004742 ORTHO05D005677 1.4e-10 70.9 135 41.5
Os02g0693000 Oryza sativa ssp. japonica HOM05D004742 ORTHO05D005677 9.3e-10 68.2 86 47.7
Zm00001eb072350 Zea mays HOM05D004742 ORTHO05D005677 9.6e-07 58.2 93 45.2
CSS0009789 Camellia sinensis var. sinensis HOM05D004742 ORTHO05D005677 1.3e-06 57.8 99 39.4


User provided reference genes

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