Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_06080_v3 Cicer arietinum L. HOM05D006292 ORTHO05D006110 3.8e-57 224.6 109 100.0
Medtr5g030470 Medicago truncatula HOM05D006292 ORTHO05D006110 1.5e-40 169.5 111 75.7
Lalb_Chr05g0216081 Lupinus albus HOM05D006292 ORTHO05D006110 1.7e-36 156.0 107 71.0
Psat2g135960 Pisum sativum HOM05D006292 ORTHO05D006110 2.2e-36 155.6 110 73.6
Lalb_Chr09g0325661 Lupinus albus HOM05D006292 ORTHO05D006110 3.7e-36 154.8 108 68.5
TPR.G3912 Trifolium pratense HOM05D006292 ORTHO05D006110 8.2e-36 153.7 100 74.0
Lj2g0014920 Lotus japonicus HOM05D006292 ORTHO05D006110 1.6e-34 149.4 118 64.4
Lalb_Chr16g0381361 Lupinus albus HOM05D006292 ORTHO05D006110 5.9e-34 147.5 108 66.7
Glyma.09G204400 Glycine max HOM05D006292 ORTHO05D006110 5.5e-32 141.0 105 67.6
Phvul.002G141600 Phaseolus vulgaris HOM05D006292 ORTHO05D006110 6.8e-30 134.0 108 61.1
Glyma.01G018500 Glycine max HOM05D006292 ORTHO05D006110 3.4e-29 131.7 108 63.0
VMungo1215G0846 Vigna mungo HOM05D006292 ORTHO05D006110 7.7e-26 120.6 124 50.0
Glyma.07G112800 Glycine max HOM05D006292 ORTHO05D006110 3.5e-18 95.1 117 50.4
arahy.Tifrunner.gnm1.ann1.92QZ6T Arachis hypogaea HOM05D006292 ORTHO05D006110 5.9e-18 94.4 108 50.0
Lj4g0026533 Lotus japonicus HOM05D006292 ORTHO05D006110 1.0e-17 93.6 115 52.2
arahy.Tifrunner.gnm1.ann1.46AG3A Arachis hypogaea HOM05D006292 ORTHO05D006110 3.8e-17 91.7 108 48.1
MD16G1274300 Malus domestica HOM05D006292 ORTHO05D006110 5.0e-17 91.3 116 46.6
Manes.15G181600 Manihot esculenta HOM05D006292 ORTHO05D006110 8.6e-17 90.5 104 50.0
TPR.G28248 Trifolium pratense HOM05D006292 ORTHO05D006110 1.5e-16 89.7 113 46.9
Prupe.5G036400 Prunus persica HOM05D006292 ORTHO05D006110 2.5e-16 89.0 117 44.4
FAN13G0922 Fragaria x ananassa HOM05D006292 ORTHO05D006110 9.5e-16 87.0 116 50.9
RcHm_v2.0_Chr7g0209741 Rosa chinensis HOM05D006292 ORTHO05D006110 1.6e-15 86.3 116 50.9
TWI60G0215 Tripterygium wilfordii HOM05D006292 ORTHO05D006110 1.6e-15 86.3 111 49.5
Potri.001G142250 Populus trichocarpa HOM05D006292 ORTHO05D006110 2.1e-15 85.9 103 49.5
Potri.003G092100 Populus trichocarpa HOM05D006292 ORTHO05D006110 2.1e-15 85.9 104 48.1
FvH4_5g22090 Fragaria vesca HOM05D006292 ORTHO05D006110 2.8e-15 85.5 116 50.0
Glyma.03G113900 Glycine max HOM05D006292 ORTHO05D006110 2.8e-15 85.5 116 45.7
arahy.Tifrunner.gnm1.ann1.L0PZ9J Arachis hypogaea HOM05D006292 ORTHO05D006110 3.6e-15 85.1 99 52.5
arahy.Tifrunner.gnm1.ann1.RC41H8 Arachis hypogaea HOM05D006292 ORTHO05D006110 3.6e-15 85.1 99 52.5
COL.COLO4_17031 Corchorus olitorius HOM05D006292 ORTHO05D006110 4.7e-15 84.7 114 44.7
Cpa.g.sc1778.1 Carica papaya HOM05D006292 ORTHO05D006110 8.0e-15 84.0 115 45.2
Ciclev10013401m.g Citrus clementina HOM05D006292 ORTHO05D006110 1.0e-14 83.6 111 43.2
Thecc.03G227700 Theobroma cacao HOM05D006292 ORTHO05D006110 1.0e-14 83.6 113 46.0
TAR636G3028 Trochodendron aralioides HOM05D006292 ORTHO05D006110 1.4e-14 83.2 113 46.9
TWI81G0365 Tripterygium wilfordii HOM05D006292 ORTHO05D006110 1.8e-14 82.8 109 50.5
Duzib205G0138 Durio zibethinus HOM05D006292 ORTHO05D006110 2.3e-14 82.4 116 45.7
Medtr8g067270 Medicago truncatula HOM05D006292 ORTHO05D006110 3.0e-14 82.0 114 43.0
CSS0029921 Camellia sinensis var. sinensis HOM05D006292 ORTHO05D006110 1.2e-13 80.1 111 45.9
CSS0047178 Camellia sinensis var. sinensis HOM05D006292 ORTHO05D006110 1.2e-13 80.1 111 45.9
Duzib068G0707 Durio zibethinus HOM05D006292 ORTHO05D006110 1.2e-13 80.1 104 44.2
Psat4g118000 Pisum sativum HOM05D006292 ORTHO05D006110 2.0e-13 79.3 109 44.0
Sed0015746 Sechium edule HOM05D006292 ORTHO05D006110 7.5e-13 77.4 105 46.7
EL10Ac5g12118 Beta vulgaris HOM05D006292 ORTHO05D006110 9.8e-13 77.0 124 41.1
Lalb_Chr09g0334701 Lupinus albus HOM05D006292 ORTHO05D006110 1.1e-11 73.6 112 41.1
CSS0025259 Camellia sinensis var. sinensis HOM05D006292 ORTHO05D006110 2.4e-11 72.4 117 42.7
Peaxi162Scf00460g00032 Petunia axillaris HOM05D006292 ORTHO05D006110 2.4e-11 72.4 103 42.7
Hma1.2p1_1063F.1_g253570 Hydrangea macrophylla HOM05D006292 ORTHO05D006110 3.2e-11 72.0 117 39.3
CANSAT21G1416 Cannabis sativa HOM05D006292 ORTHO05D006110 4.1e-11 71.6 119 41.2
Phvul.010G051800 Phaseolus vulgaris HOM05D006292 ORTHO05D006110 4.1e-11 71.6 126 38.9
Rhsim07G0127000 Rhododendron simsii HOM05D006292 ORTHO05D006110 4.1e-11 71.6 118 44.9
Hma1.2p1_2704F.1_g327130 Hydrangea macrophylla HOM05D006292 ORTHO05D006110 5.4e-11 71.2 117 39.3
AL4G31240 Arabidopsis lyrata HOM05D006292 ORTHO05D006110 9.2e-11 70.5 107 41.1
Carub.0004s1692 Capsella rubella HOM05D006292 ORTHO05D006110 1.2e-10 70.1 107 43.9
CiPaw.12G063900 Carya illinoinensis HOM05D006292 ORTHO05D006110 1.2e-10 70.1 112 40.2
Aqoxy3G02346 Aquilegia oxysepala HOM05D006292 ORTHO05D006110 1.6e-10 69.7 109 40.4
FAN08G0524 Fragaria x ananassa HOM05D006292 ORTHO05D006110 1.6e-10 69.7 75 52.0
FAN18G1495 Fragaria x ananassa HOM05D006292 ORTHO05D006110 1.6e-10 69.7 75 52.0
PGSC0003DMG400001160 Solanum tuberosum HOM05D006292 ORTHO05D006110 1.6e-10 69.7 110 40.9
ClCG10G001600 Citrullus lanatus HOM05D006292 ORTHO05D006110 2.0e-10 69.3 116 44.8
Sc07g0008700 Simmondsia chinensis HOM05D006292 ORTHO05D006110 2.0e-10 69.3 104 45.2
Eucgr.D02199 Eucalyptus grandis HOM05D006292 ORTHO05D006110 2.7e-10 68.9 112 41.1
Thhalv10001070m.g Eutrema salsugineum HOM05D011808 ORTHO05D006110 3.5e-10 68.6 123 43.9
Peaxi162Scf00045g00010 Petunia axillaris HOM05D006292 ORTHO05D006110 3.5e-10 68.6 115 42.6
Sopen08g001060 Solanum pennellii HOM05D006292 ORTHO05D006110 3.5e-10 68.6 110 40.9
CARHR129380 Cardamine hirsuta HOM05D006292 ORTHO05D006110 4.6e-10 68.2 111 40.5
AUR62007293 Chenopodium quinoa HOM05D043215 ORTHO05D006110 4.6e-10 68.2 126 40.5
FAN04G1003 Fragaria x ananassa HOM05D006292 ORTHO05D006110 4.6e-10 68.2 75 50.7
Atru.chr6.1708 Acer truncatum HOM05D006292 ORTHO05D006110 6.0e-10 67.8 101 41.6
AT2G35215 Arabidopsis thaliana HOM05D006292 ORTHO05D006110 6.0e-10 67.8 110 41.8
BcaB02g09469 Brassica carinata HOM05D006292 ORTHO05D006110 7.8e-10 67.4 103 38.8
MELO3C013852.2 Cucumis melo HOM05D006292 ORTHO05D006110 7.8e-10 67.4 109 44.0
PGR031G2877 Punica granatum HOM05D006292 ORTHO05D006110 7.8e-10 67.4 119 40.3
BolC4t22939H Brassica oleracea HOM05D006292 ORTHO05D006110 1.3e-09 66.6 103 38.8
Nn1g08042 Nelumbo nucifera HOM05D006292 ORTHO05D006110 1.3e-09 66.6 73 45.2
Solyc08g005040.1 Solanum lycopersicum HOM05D006292 ORTHO05D006110 1.3e-09 66.6 110 39.1
BcaC02g07728 Brassica carinata HOM05D006292 ORTHO05D006110 1.7e-09 66.2 107 38.3
BolC4t27900H Brassica oleracea HOM05D006292 ORTHO05D006110 1.7e-09 66.2 107 38.3
Thhalv10017673m.g Eutrema salsugineum HOM05D006292 ORTHO05D006110 1.7e-09 66.2 105 39.0
Sopen06g021400 Solanum pennellii HOM05D006292 ORTHO05D006110 1.7e-09 66.2 116 38.8
BcaC02g11625 Brassica carinata HOM05D006292 ORTHO05D006110 2.3e-09 65.9 103 38.8
A04p26770 Brassica napus HOM05D006292 ORTHO05D006110 2.3e-09 65.9 107 38.3
C04p12960 Brassica napus HOM05D006292 ORTHO05D006110 2.3e-09 65.9 103 38.8
C04p64170 Brassica napus HOM05D006292 ORTHO05D006110 2.3e-09 65.9 107 38.3
BraA04t18181Z Brassica rapa HOM05D006292 ORTHO05D006110 2.3e-09 65.9 107 38.3
Gohir.A12G208300 Gossypium hirsutum HOM05D006292 ORTHO05D006110 3.9e-09 65.1 109 39.4
Gohir.D09G193100 Gossypium hirsutum HOM05D006292 ORTHO05D006110 3.9e-09 65.1 122 41.0
Sp4g17440 Schrenkiella parvula HOM05D006292 ORTHO05D006110 3.9e-09 65.1 106 40.6
A05p10540 Brassica napus HOM05D006292 ORTHO05D006110 6.6e-09 64.3 103 37.9
BraA05t19992Z Brassica rapa HOM05D006292 ORTHO05D006110 6.6e-09 64.3 103 37.9
Dinv25216 Davidia involucrata HOM05D000567 ORTHO05D000767 8.6e-09 63.9 75 49.3
Eucgr.E00278 Eucalyptus grandis HOM05D006292 ORTHO05D006110 8.6e-09 63.9 120 39.2
Gohir.D12G210900 Gossypium hirsutum HOM05D006292 ORTHO05D006110 8.6e-09 63.9 109 38.5
Gorai.008G226400 Gossypium raimondii HOM05D006292 ORTHO05D006110 8.6e-09 63.9 109 38.5
CARHR174730 Cardamine hirsuta HOM05D011808 ORTHO05D006110 1.1e-08 63.5 124 40.3
AL8G11570 Arabidopsis lyrata HOM05D011808 ORTHO05D006110 1.5e-08 63.2 123 40.7
Gorai.006G216600 Gossypium raimondii HOM05D006292 ORTHO05D006110 1.5e-08 63.2 122 40.2
Cc08_g02780 Coffea canephora HOM05D006292 ORTHO05D006110 1.9e-08 62.8 105 41.0
Gohir.A09G201400 Gossypium hirsutum HOM05D006292 ORTHO05D006110 1.9e-08 62.8 122 41.0
Solyc08g076940.1 Solanum lycopersicum HOM05D006292 ORTHO05D006110 1.9e-08 62.8 109 42.2
BcaB06g28832 Brassica carinata HOM05D006292 ORTHO05D006110 2.5e-08 62.4 103 36.9
Sopen08g025520 Solanum pennellii HOM05D006292 ORTHO05D006110 2.5e-08 62.4 109 43.1
Carub.0008s0115 Capsella rubella HOM05D011808 ORTHO05D006110 5.6e-08 61.2 125 40.8
BcaC03g16885 Brassica carinata HOM05D011808 ORTHO05D006110 7.3e-08 60.8 125 40.0
C02p47820 Brassica napus HOM05D011808 ORTHO05D006110 7.3e-08 60.8 125 40.0
BolC2t10817H Brassica oleracea HOM05D011808 ORTHO05D006110 7.3e-08 60.8 125 40.0
CiPaw.11G093500 Carya illinoinensis HOM05D006292 ORTHO05D006110 7.3e-08 60.8 111 36.9
BolC4t22949H Brassica oleracea HOM05D006292 ORTHO05D006110 9.5e-08 60.5 103 36.9
A02p30310 Brassica napus HOM05D011808 ORTHO05D006110 1.2e-07 60.1 126 38.1
BraA02t08046Z Brassica rapa HOM05D011808 ORTHO05D006110 1.2e-07 60.1 126 38.1
CsaV3_3G001720 Cucumis sativus L. HOM05D006292 ORTHO05D006110 1.2e-07 60.1 117 40.2
Actinidia14806 Actinidia chinensis HOM05D000567 ORTHO05D000767 1.6e-07 59.7 102 38.2
Ah.07g200350 Amaranthus hybridus HOM05D006292 ORTHO05D006110 1.6e-07 59.7 123 37.4
Aa31LG9G15250 Aethionema arabicum HOM05D006292 ORTHO05D006110 2.1e-07 59.3 128 32.8
AT5G46770 Arabidopsis thaliana HOM05D011808 ORTHO05D006110 2.1e-07 59.3 124 38.7
QL12p005176 Quercus lobata HOM05D006292 ORTHO05D006110 3.6e-07 58.5 118 34.7
Sp2g11580 Schrenkiella parvula HOM05D011808 ORTHO05D006110 3.6e-07 58.5 113 38.9
SpUn0036_0030 Schrenkiella parvula HOM05D011808 ORTHO05D006110 3.6e-07 58.5 113 38.9
THA.LOC104814444 Tarenaya hassleriana HOM05D006292 ORTHO05D006110 4.7e-07 58.2 107 39.3
MELO3C003411.2 Cucumis melo HOM05D011808 ORTHO05D006110 1.1e-06 57.0 109 38.5
CsaV3_3G049160 Cucumis sativus L. HOM05D006292 ORTHO05D006110 1.4e-06 56.6 123 36.6
vmacro00329 Vaccinium macrocarpon HOM05D006292 ORTHO05D006110 2.3e-06 55.8 120 30.8
Oeu017028.1 Olea europaea HOM05D006292 ORTHO05D006110 5.2e-06 54.7 105 41.9
Sc01g0007420 Simmondsia chinensis HOM05D006292 ORTHO05D006110 6.8e-06 54.3 133 37.6
Haze_08227 Corylus avellana HOM05D006292 ORTHO05D006110 8.9e-06 53.9 111 38.7


User provided reference genes

Program Settings