Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_06067_v3 Cicer arietinum L. HOM05D004734 ORTHO05D006019 1.9e-254 882.1 482 100.0
TPR.G6822 Trifolium pratense HOM05D004734 ORTHO05D006019 5.9e-203 711.1 477 80.5
Glyma.14G050700 Glycine max HOM05D004734 ORTHO05D006019 5.2e-191 671.4 481 75.9
Glyma.02G266800 Glycine max HOM05D004734 ORTHO05D006019 7.8e-187 657.5 477 73.2
Phvul.008G215200 Phaseolus vulgaris HOM05D004734 ORTHO05D006019 4.7e-184 648.3 481 73.8
VMungo0647G1710 Vigna mungo HOM05D004734 ORTHO05D006019 3.2e-180 635.6 481 73.0
Lalb_Chr10g0105531 Lupinus albus HOM05D004734 ORTHO05D006019 3.7e-173 612.1 486 72.2
TPR.G25656 Trifolium pratense HOM05D004734 ORTHO05D006019 2.1e-163 579.7 403 80.1
arahy.Tifrunner.gnm1.ann1.L0FFGY Arachis hypogaea HOM05D004734 ORTHO05D006019 6.4e-157 558.1 489 65.8
arahy.Tifrunner.gnm1.ann1.LYY30L Arachis hypogaea HOM05D004734 ORTHO05D006019 3.2e-156 555.8 505 64.2
Atru.chr6.3288 Acer truncatum HOM05D004734 ORTHO05D006019 6.4e-141 505.0 482 57.7
Atru.chr6.3273 Acer truncatum HOM05D004734 ORTHO05D006019 8.4e-141 504.6 482 57.7
Ciclev10014379m.g Citrus clementina HOM05D004734 ORTHO05D006019 5.1e-138 495.4 482 56.2
QL01p037797 Quercus lobata HOM05D004734 ORTHO05D006019 3.7e-136 489.2 494 55.5
Cfa014305 Carpinus fangiana HOM05D004734 ORTHO05D006019 4.0e-135 485.7 496 55.0
Manes.12G058300 Manihot esculenta HOM05D004734 ORTHO05D006019 8.4e-133 478.0 486 54.3
CiPaw.04G108800 Carya illinoinensis HOM05D004734 ORTHO05D006019 1.9e-132 476.9 495 53.5
Prupe.3G208500 Prunus persica HOM05D004734 ORTHO05D006019 4.2e-132 475.7 478 54.6
MD09G1116200 Malus domestica HOM05D004734 ORTHO05D006019 5.1e-130 468.8 478 54.4
Gohir.D07G174400 Gossypium hirsutum HOM05D004734 ORTHO05D006019 2.5e-129 466.5 482 53.1
Dinv08709 Davidia involucrata HOM05D004734 ORTHO05D006019 1.3e-128 464.2 496 53.8
Duzib138G1622 Durio zibethinus HOM05D004734 ORTHO05D006019 3.7e-128 462.6 486 53.1
FAN14G4409 Fragaria x ananassa HOM05D004734 ORTHO05D006019 3.7e-128 462.6 489 52.8
Gorai.001G195000 Gossypium raimondii HOM05D004734 ORTHO05D006019 1.5e-126 457.2 475 53.1
TWI75G1245 Tripterygium wilfordii HOM05D004734 ORTHO05D006019 4.5e-126 455.7 487 50.9
MD17G1107900 Malus domestica HOM05D004734 ORTHO05D006019 1.7e-125 453.8 489 52.4
Potri.002G223600 Populus trichocarpa HOM05D004734 ORTHO05D006019 2.2e-125 453.4 487 52.0
RcHm_v2.0_Chr2g0157781 Rosa chinensis HOM05D004734 ORTHO05D006019 3.8e-125 452.6 489 51.9
FAN09G1456 Fragaria x ananassa HOM05D004734 ORTHO05D006019 1.1e-124 451.1 489 51.3
Haze_12752 Corylus avellana HOM05D004734 ORTHO05D006019 1.9e-124 450.3 474 53.2
PGR042G3679 Punica granatum HOM05D004734 ORTHO05D006019 2.5e-124 449.9 491 51.7
FAN02G4553 Fragaria x ananassa HOM05D004734 ORTHO05D006019 5.5e-124 448.7 489 51.5
ClCG02G018160 Citrullus lanatus HOM05D004734 ORTHO05D006019 7.2e-124 448.4 489 52.6
FAN05G4875 Fragaria x ananassa HOM05D004734 ORTHO05D006019 9.4e-124 448.0 496 51.0
Sabra02G0171200 Salix brachista HOM05D004734 ORTHO05D006019 1.0e-122 444.5 487 50.7
CANSAT64G0097 Cannabis sativa HOM05D004734 ORTHO05D006019 8.8e-122 441.4 491 52.1
MELO3C019721.2 Cucumis melo HOM05D004734 ORTHO05D006019 7.4e-121 438.3 506 51.2
CARHR126840 Cardamine hirsuta HOM05D004734 ORTHO05D006019 1.7e-120 437.2 485 51.1
Thhalv10016293m.g Eutrema salsugineum HOM05D004734 ORTHO05D006019 2.4e-119 433.3 486 50.6
AL4G28410 Arabidopsis lyrata HOM05D004734 ORTHO05D006019 1.2e-118 431.0 485 50.1
AT2G32900 Arabidopsis thaliana HOM05D004734 ORTHO05D006019 3.4e-118 429.5 482 50.6
Carub.0004s1431 Capsella rubella HOM05D004734 ORTHO05D006019 5.9e-118 428.7 485 50.3
Actinidia09755 Actinidia chinensis HOM05D004734 ORTHO05D006019 1.0e-117 427.9 482 50.2
Aa31LG5G4570 Aethionema arabicum HOM05D004734 ORTHO05D006019 1.0e-117 427.9 482 49.6
Hma1.2p1_2840F.1_g329320 Hydrangea macrophylla HOM05D004734 ORTHO05D006019 2.2e-117 426.8 493 50.7
TAR629G0221 Trochodendron aralioides HOM05D004734 ORTHO05D006019 2.2e-117 426.8 484 49.4
CSS0018671 Camellia sinensis var. sinensis HOM05D004734 ORTHO05D006019 1.9e-116 423.7 491 49.5
Eucgr.A01088 Eucalyptus grandis HOM05D004734 ORTHO05D006019 4.2e-116 422.5 479 49.5
THA.LOC104826129 Tarenaya hassleriana HOM05D004734 ORTHO05D006019 2.1e-115 420.2 478 49.2
Sp4g15270 Schrenkiella parvula HOM05D004734 ORTHO05D006019 2.7e-115 419.9 485 49.3
Sed0026816 Sechium edule HOM05D004734 ORTHO05D006019 2.7e-115 419.9 491 49.7
BcaB01g03944 Brassica carinata HOM05D004734 ORTHO05D006019 2.3e-114 416.8 485 48.2
BcaC01g05869 Brassica carinata HOM05D004734 ORTHO05D006019 2.0e-113 413.7 485 48.0
C03p21580 Brassica napus HOM05D004734 ORTHO05D006019 3.3e-113 412.9 485 48.0
BolC3t14542H Brassica oleracea HOM05D004734 ORTHO05D006019 3.3e-113 412.9 485 48.0
Medtr5g084830 Medicago truncatula HOM05D004734 ORTHO05D006019 3.3e-113 412.9 286 78.3
Nn1g07321 Nelumbo nucifera HOM05D004734 ORTHO05D006019 7.4e-113 411.8 484 46.9
vmacro12148 Vaccinium macrocarpon HOM05D004734 ORTHO05D006019 9.7e-113 411.4 486 49.2
A03p18530 Brassica napus HOM05D004734 ORTHO05D006019 1.3e-112 411.0 486 48.1
BraA03t11112Z Brassica rapa HOM05D004734 ORTHO05D006019 1.3e-112 411.0 486 48.1
A05p12730 Brassica napus HOM05D004734 ORTHO05D006019 1.7e-112 410.6 485 50.1
BcaB02g10504 Brassica carinata HOM05D004734 ORTHO05D006019 2.8e-112 409.8 485 50.3
BolC4t23215H Brassica oleracea HOM05D004734 ORTHO05D006019 2.8e-112 409.8 483 50.5
BraA05t20212Z Brassica rapa HOM05D004734 ORTHO05D006019 3.7e-112 409.5 486 50.2
Solyc05g043350.4 Solanum lycopersicum HOM05D004734 ORTHO05D006019 9.1e-111 404.8 480 47.3
GSVIVG01030526001 Vitis vinifera HOM05D004734 ORTHO05D006019 2.2e-109 400.2 486 50.6
COL.COLO4_07254 Corchorus olitorius HOM05D004734 ORTHO05D006019 1.9e-108 397.1 472 47.7
Psat2g026760 Pisum sativum HOM05D004734 ORTHO05D006019 2.5e-108 396.7 290 75.9
CAN.G387.3 Capsicum annuum HOM05D004734 ORTHO05D006019 4.2e-108 396.0 480 46.9
Nitab4.5_0009060g0010 Nicotiana tabacum HOM05D004734 ORTHO05D006019 3.6e-107 392.9 485 46.2
Lj8A131T30 Lonicera japonica HOM05D004734 ORTHO05D006019 5.2e-106 389.0 484 49.2
LjContig00029g0002265 Lotus japonicus HOM05D004734 ORTHO05D006019 5.7e-105 385.6 290 73.4
Nitab4.5_0000006g0360 Nicotiana tabacum HOM05D004734 ORTHO05D006019 7.4e-105 385.2 493 45.2
Cc00_g21460 Coffea canephora HOM05D004734 ORTHO05D006019 9.7e-105 384.8 489 46.4
Migut.A01159 Erythranthe guttata HOM05D004734 ORTHO05D006019 6.3e-104 382.1 486 45.9
Sc21g0001080 Simmondsia chinensis HOM05D004734 ORTHO05D006019 6.3e-104 382.1 491 46.0
HanXRQChr16g0508221 Helianthus annuus HOM05D004734 ORTHO05D006019 1.2e-102 377.9 480 47.9
Aqoxy2G03788 Aquilegia oxysepala HOM05D004734 ORTHO05D006019 2.2e-101 373.6 497 45.3
EL10Ac9g22816 Beta vulgaris HOM05D004734 ORTHO05D006019 7.2e-100 368.6 529 42.9
SalBow7G0507 Salvia bowleyana HOM05D004734 ORTHO05D006019 7.2e-100 368.6 493 45.2
HanXRQChr14g0438421 Helianthus annuus HOM05D004734 ORTHO05D006019 9.4e-100 368.2 480 47.9
Lsat_1_v5_gn_7_94920 Lactuca sativa HOM05D004734 ORTHO05D006019 1.6e-99 367.5 482 44.8
DCAR_012916 Daucus carota HOM05D004734 ORTHO05D006019 2.7e-99 366.7 488 44.9
Oeu054514.1 Olea europaea HOM05D004734 ORTHO05D006019 1.4e-98 364.4 491 47.0
SGA_v2.0_scaffold73G24401 Striga asiatica HOM05D004734 ORTHO05D006019 1.8e-98 364.0 508 43.3
C04p16650 Brassica napus HOM05D004734 ORTHO05D006019 8.8e-98 361.7 487 47.0
Ah.01g001840 Amaranthus hybridus HOM05D004734 ORTHO05D006019 1.2e-97 361.3 494 44.3
Peaxi162Scf00977g00315 Petunia axillaris HOM05D004734 ORTHO05D006019 1.2e-91 341.3 482 43.2
AUR62017577 Chenopodium quinoa HOM05D004734 ORTHO05D006019 2.0e-89 334.0 433 44.8
PSO017G2150 Papaver somniferum HOM05D004734 ORTHO05D006019 2.0e-89 334.0 497 41.2
Cpa.g.sc132.37 Carica papaya HOM05D004734 ORTHO05D006019 1.3e-88 331.3 485 44.9
MBI16_g26176_MAGBIO Magnolia biondii HOM05D004734 ORTHO05D006019 3.1e-87 326.6 481 42.0
CDE07G0136 Ceratophyllum demersum HOM05D004734 ORTHO05D006019 7.0e-87 325.5 480 41.5
AUR62015114 Chenopodium quinoa HOM05D004734 ORTHO05D006019 1.5e-84 317.8 426 43.9
Rhsim06G0169400 Rhododendron simsii HOM05D004734 ORTHO05D006019 7.2e-84 315.5 503 40.8
Duzib211G0196 Durio zibethinus HOM05D004734 ORTHO05D006019 6.8e-82 308.9 484 40.5
ATR1128G058 Amborella trichopoda HOM05D004734 ORTHO05D006019 1.3e-80 304.7 490 40.8
Thecc.01G184100 Theobroma cacao HOM05D004734 ORTHO05D006019 6.8e-74 282.3 303 54.1
HPP92_000196 Vanilla planifolia HOM05D004734 ORTHO05D006019 1.3e-72 278.1 482 37.1
Dinv39761 Davidia involucrata HOM05D004734 ORTHO05D006019 2.9e-72 276.9 295 55.3
Gohir.A07G168100 Gossypium hirsutum HOM05D004734 ORTHO05D006019 6.4e-72 275.8 303 53.1
Hund08442 Selenicereus undatus HOM05D004734 ORTHO05D006019 1.3e-69 268.1 461 38.4
Psat0s1468g0080 Pisum sativum HOM05D004734 ORTHO05D006019 2.3e-69 267.3 217 70.0
ECA236G2537 Erigeron canadensis HOM05D004734 ORTHO05D006019 3.9e-69 266.5 368 44.8
FvH4_6g41900 Fragaria vesca HOM05D004734 ORTHO05D006019 1.2e-67 261.5 298 51.7
CsaV3_6G015550 Cucumis sativus L. HOM05D004734 ORTHO05D006019 6.8e-66 255.8 300 52.7
PSO675G0915 Papaver somniferum HOM05D004734 ORTHO05D006019 5.4e-63 246.1 367 42.0
Medtr5g084823 Medicago truncatula HOM05D004734 ORTHO05D006019 1.6e-62 244.6 189 76.2
Sopen05g026560 Solanum pennellii HOM05D004734 ORTHO05D006019 1.3e-61 241.5 297 50.2
unitig_8.g4608 Utricularia gibba HOM05D004734 ORTHO05D006019 3.2e-55 220.3 309 39.5
Psat1g135920 Pisum sativum HOM05D004734 ORTHO05D006019 9.2e-55 218.8 147 78.9
SEGI_13952 Sequoiadendron giganteum HOM05D004734 ORTHO05D006019 9.2e-55 218.8 489 31.5
Hma1.2p1_2840F.1_g329330 Hydrangea macrophylla HOM05D004734 ORTHO05D006019 2.5e-52 210.7 244 54.1
Atru.chr12.2374 Acer truncatum HOM05D004734 ORTHO05D006019 2.8e-51 207.2 188 56.9
PGSC0003DMG400019206 Solanum tuberosum HOM05D004734 ORTHO05D006019 2.9e-48 197.2 253 49.4
Psat0s1468g0040 Pisum sativum HOM05D004734 ORTHO05D006019 3.9e-45 186.8 118 83.1
Zm00001eb114880 Zea mays HOM05D004734 ORTHO05D006019 2.9e-40 170.6 359 33.7
Psat5g176200 Pisum sativum HOM05D004734 ORTHO05D006019 6.4e-40 169.5 111 80.2
RcHm_v2.0_Chr1g0340141 Rosa chinensis HOM05D004734 ORTHO05D006019 2.4e-39 167.5 221 46.2
Hma1.2p1_0445F.1_g154190 Hydrangea macrophylla HOM05D004734 ORTHO05D006019 4.2e-39 166.8 140 64.3
HPP92_028626 Vanilla planifolia HOM05D004734 ORTHO05D006019 4.2e-39 166.8 415 31.6
HPP92_028624 Vanilla planifolia HOM05D004734 ORTHO05D006019 2.7e-38 164.1 415 31.3
SHI10095 Sapria himalayana HOM05D004734 ORTHO05D006019 2.3e-37 161.0 306 35.6
Ca_06065_v3 Cicer arietinum L. HOM05D004734 ORTHO05D001394 6.2e-35 152.9 78 98.7
Ca_31316_v3 Cicer arietinum L. HOM05D004734 ORTHO05D006019 4.0e-34 150.2 106 79.2
SHI10094 Sapria himalayana HOM05D004734 ORTHO05D006019 1.3e-32 145.2 192 45.3
RcHm_v2.0_Chr0c20g0500271 Rosa chinensis HOM05D004734 ORTHO05D006019 1.9e-28 131.3 168 43.5
HPP92_000240 Vanilla planifolia HOM05D004734 ORTHO05D006019 3.7e-27 127.1 248 35.9
Pp3c3_5560 Physcomitrium patens HOM05D004734 ORTHO05D006019 9.0e-26 122.5 489 24.9
Mapoly0004s0108 Marchantia polymorpha HOM05D004734 ORTHO05D006019 2.6e-25 120.9 555 21.8
SMO200G0072 Selaginella moellendorffii HOM05D004734 ORTHO05D006019 4.8e-19 100.1 448 23.2
unitig_8.g4607 Utricularia gibba HOM05D004734 ORTHO05D006019 2.6e-17 94.4 114 50.9
HPP92_000155 Vanilla planifolia HOM05D004734 ORTHO05D006019 8.7e-13 79.3 215 28.8
FvH4_3g20454 Fragaria vesca HOM05D004734 ORTHO05D196162 2.6e-09 67.8 116 41.4
FvH4_1g12421 Fragaria vesca HOM05D058264 ORTHO05D029456 1.0e-08 65.9 109 43.1
TPR.G3898 Trifolium pratense HOM05D004734 ORTHO05D411493 7.9e-06 56.2 37 81.1


User provided reference genes

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