Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_06023_v3 Cicer arietinum L. HOM05D007902 ORTHO05D009839 5.2e-93 344.4 171 100.0
Medtr0191s0020 Medicago truncatula HOM05D007902 ORTHO05D009839 1.5e-47 193.4 173 62.4
arahy.Tifrunner.gnm1.ann1.0H4UJT Arachis hypogaea HOM05D007902 ORTHO05D009839 3.8e-43 178.7 153 56.9
arahy.Tifrunner.gnm1.ann1.C7E7HV Arachis hypogaea HOM05D007902 ORTHO05D009839 4.9e-43 178.3 153 56.9
Psat1g014880 Pisum sativum HOM05D007902 ORTHO05D009839 7.3e-39 164.5 152 55.9
TAR623G0347 Trochodendron aralioides HOM05D007902 ORTHO05D009839 4.2e-34 148.7 170 48.2
Ciclev10032767m.g Citrus clementina HOM05D007902 ORTHO05D009839 1.3e-32 143.7 157 51.6
QL08p064506 Quercus lobata HOM05D007902 ORTHO05D009839 1.7e-32 143.3 153 50.3
Dinv21823 Davidia involucrata HOM05D007902 ORTHO05D009839 2.3e-32 142.9 154 48.7
Actinidia07804 Actinidia chinensis HOM05D007902 ORTHO05D009839 3.9e-32 142.1 171 46.8
HanXRQChr09g0251491 Helianthus annuus HOM05D007902 ORTHO05D009839 1.1e-31 140.6 156 50.0
Potri.019G049100 Populus trichocarpa HOM05D007902 ORTHO05D009839 1.9e-31 139.8 157 50.3
Sabra19G0058600 Salix brachista HOM05D007902 ORTHO05D009839 2.5e-31 139.4 157 50.3
LjContig00357g0001230 Lotus japonicus HOM05D007902 ORTHO05D009839 4.3e-31 138.7 161 47.8
Eucgr.G03123 Eucalyptus grandis HOM05D007902 ORTHO05D009839 5.6e-31 138.3 153 47.7
vmacro09979 Vaccinium macrocarpon HOM05D007902 ORTHO05D009839 9.6e-31 137.5 136 51.5
Hma1.2p1_0292F.1_g115760 Hydrangea macrophylla HOM05D007902 ORTHO05D009839 3.6e-30 135.6 165 46.7
CANSAT56G3130 Cannabis sativa HOM05D007902 ORTHO05D009839 6.2e-30 134.8 147 52.4
Cpa.g.sc19.89 Carica papaya HOM05D007902 ORTHO05D009839 6.2e-30 134.8 157 48.4
MD01G1163300 Malus domestica HOM05D007902 ORTHO05D009839 6.2e-30 134.8 144 51.4
TWI53G0910 Tripterygium wilfordii HOM05D007902 ORTHO05D009839 1.8e-29 133.3 166 48.8
FAN01G1070 Fragaria x ananassa HOM05D001122 ORTHO05D001877 4.0e-29 132.1 149 51.0
FvH4_7g25601 Fragaria vesca HOM05D007902 ORTHO05D009839 6.9e-29 131.3 149 51.0
Manes.07G138200 Manihot esculenta HOM05D007902 ORTHO05D009839 9.0e-29 131.0 155 48.4
FAN03G2841 Fragaria x ananassa HOM05D001122 ORTHO05D001877 1.5e-28 130.2 149 50.3
Nn2g10362 Nelumbo nucifera HOM05D007902 ORTHO05D009839 2.6e-28 129.4 158 44.9
CiPaw.01G304600 Carya illinoinensis HOM05D007902 ORTHO05D009839 1.3e-27 127.1 162 44.4
Aqoxy4G02352 Aquilegia oxysepala HOM05D007902 ORTHO05D009839 2.2e-27 126.3 193 42.0
Prupe.2G261300 Prunus persica HOM05D007902 ORTHO05D009839 2.2e-27 126.3 154 46.8
Haze_17334 Corylus avellana HOM05D007902 ORTHO05D009839 3.8e-27 125.6 165 44.2
Cc02_g05590 Coffea canephora HOM05D007902 ORTHO05D009839 4.9e-27 125.2 156 45.5
Gohir.D13G005400 Gossypium hirsutum HOM05D007902 ORTHO05D009839 6.4e-27 124.8 173 42.8
Migut.F00588 Erythranthe guttata HOM05D007902 ORTHO05D009839 8.4e-27 124.4 150 46.0
RcHm_v2.0_Chr1g0371741 Rosa chinensis HOM05D007902 ORTHO05D009839 8.4e-27 124.4 147 48.3
EL10Ac2g04265 Beta vulgaris HOM05D007902 ORTHO05D009839 1.4e-26 123.6 147 46.9
Gorai.013G006100 Gossypium raimondii HOM05D007902 ORTHO05D009839 1.4e-26 123.6 157 45.2
Lsat_1_v5_gn_9_59200 Lactuca sativa HOM05D007902 ORTHO05D009839 5.4e-26 121.7 174 43.1
COL.COLO4_26867 Corchorus olitorius HOM05D005928 ORTHO05D007500 2.1e-25 119.8 163 47.2
Gohir.A13G005700 Gossypium hirsutum HOM05D007902 ORTHO05D009839 2.1e-25 119.8 157 45.9
PGR142G4074 Punica granatum HOM05D007902 ORTHO05D009839 2.1e-25 119.8 183 39.3
Atru.chr12.150 Acer truncatum HOM05D005928 ORTHO05D007500 6.0e-25 118.2 178 42.7
MD07G1231300 Malus domestica HOM05D007902 ORTHO05D009839 6.0e-25 118.2 171 43.3
Peaxi162Scf00464g00015 Petunia axillaris HOM05D007902 ORTHO05D009839 7.9e-25 117.9 155 44.5
CAN.G591.5 Capsicum annuum HOM05D007902 ORTHO05D009839 1.8e-24 116.7 162 42.6
Sopen06g015820 Solanum pennellii HOM05D007902 ORTHO05D009839 1.8e-24 116.7 152 46.7
FAN06G1561 Fragaria x ananassa HOM05D007902 ORTHO05D009839 2.3e-24 116.3 150 49.3
CARHR207920 Cardamine hirsuta HOM05D007902 ORTHO05D009839 3.9e-24 115.5 159 44.7
SalBow5G2004 Salvia bowleyana HOM05D007902 ORTHO05D009839 6.7e-24 114.8 159 44.7
BcaB05g21722 Brassica carinata HOM05D007902 ORTHO05D009839 8.7e-24 114.4 150 42.7
BraA10t45132Z Brassica rapa HOM05D007902 ORTHO05D009839 8.7e-24 114.4 157 43.9
Thhalv10014946m.g Eutrema salsugineum HOM05D007902 ORTHO05D009839 1.5e-23 113.6 142 45.8
Sp6g37500 Schrenkiella parvula HOM05D007902 ORTHO05D009839 2.5e-23 112.8 156 44.2
C09p71380 Brassica napus HOM05D007902 ORTHO05D009839 4.3e-23 112.1 162 44.4
AT5G05330 Arabidopsis thaliana HOM05D007902 ORTHO05D009839 5.6e-23 111.7 175 40.0
BcaC03g13156 Brassica carinata HOM05D007902 ORTHO05D009839 7.4e-23 111.3 150 44.7
BcaC06g32241 Brassica carinata HOM05D007902 ORTHO05D009839 1.3e-22 110.5 162 43.8
Carub.0006s0425 Capsella rubella HOM05D007902 ORTHO05D009839 1.3e-22 110.5 159 44.0
BolC9t59901H Brassica oleracea HOM05D007902 ORTHO05D009839 2.1e-22 109.8 161 43.5
BraA02t04842Z Brassica rapa HOM05D007902 ORTHO05D009839 3.7e-22 109.0 150 44.0
C02p02280 Brassica napus HOM05D007902 ORTHO05D009839 4.8e-22 108.6 150 44.7
AL6G15200 Arabidopsis lyrata HOM05D007902 ORTHO05D009839 1.1e-21 107.5 175 40.0
Thecc.10G175100 Theobroma cacao HOM05D007902 ORTHO05D009839 1.1e-21 107.5 113 52.2
Lalb_Chr17g0347071 Lupinus albus HOM05D007902 ORTHO05D009839 2.4e-21 106.3 110 50.0
PSO017G6410 Papaver somniferum HOM05D007902 ORTHO05D009839 4.9e-19 98.6 178 38.2
Rhsim09G0183800 Rhododendron simsii HOM05D007902 ORTHO05D009839 4.9e-19 98.6 196 35.7
PGSC0003DMG400029078 Solanum tuberosum HOM05D007902 ORTHO05D009839 1.1e-18 97.4 115 44.3
Hund13474 Selenicereus undatus HOM05D007902 ORTHO05D009839 5.5e-18 95.1 175 33.1
SGA_v2.0_scaffold60G20910 Striga asiatica HOM05D005928 ORTHO05D007500 2.7e-17 92.8 177 36.2
TAR623G0840 Trochodendron aralioides HOM05D007902 ORTHO05D009839 3.5e-17 92.4 85 56.5
BolC2t06195H Brassica oleracea HOM05D007902 ORTHO05D009839 7.9e-17 91.3 141 41.8
Lj1C1068G17 Lonicera japonica HOM05D004500 ORTHO05D009839 8.7e-16 87.8 142 38.0
Nitab4.5_0002713g0030 Nicotiana tabacum HOM05D007902 ORTHO05D009839 2.1e-14 83.2 156 35.3
PSO407G0011 Papaver somniferum HOM05D007902 ORTHO05D009839 2.8e-14 82.8 154 37.7
unitig_52.g16781 Utricularia gibba HOM05D007902 ORTHO05D009839 4.1e-13 79.0 131 39.7
Nitab4.5_0000263g0270 Nicotiana tabacum HOM05D007902 ORTHO05D009839 9.0e-13 77.8 156 34.6
Sc10g0002880 Simmondsia chinensis HOM05D007902 ORTHO05D009839 9.0e-13 77.8 82 51.2
CDE07G0481 Ceratophyllum demersum HOM05D007902 ORTHO05D009839 3.8e-11 72.4 131 38.9
Cc11_g04510 Coffea canephora HOM05D000727 ORTHO05D000541 1.9e-10 70.1 168 30.4
COL.COLO4_08802 Corchorus olitorius HOM05D000576 ORTHO05D000368 4.2e-10 68.9 61 59.0
Duzib132G0609 Durio zibethinus HOM05D000727 ORTHO05D000541 5.5e-10 68.6 151 33.1
ATR0124G023 Amborella trichopoda HOM05D000727 ORTHO05D000541 7.1e-10 68.2 184 31.0
Duzib248G1122 Durio zibethinus HOM05D000727 ORTHO05D000541 1.6e-09 67.0 151 32.5
Thhalv10004817m.g Eutrema salsugineum HOM05D000727 ORTHO05D000541 1.6e-09 67.0 180 28.9
Thecc.02G153200 Theobroma cacao HOM05D000727 ORTHO05D000541 1.6e-09 67.0 172 32.6
MBI03_g13448_MAGBIO Magnolia biondii HOM05D000727 ORTHO05D000541 2.1e-09 66.6 162 32.1
Oeu054429.1 Olea europaea HOM05D007902 ORTHO05D009839 2.1e-09 66.6 111 36.9
Hund09512 Selenicereus undatus HOM05D000727 ORTHO05D000541 2.1e-09 66.6 180 31.1
PSO339G3557 Papaver somniferum HOM05D000727 ORTHO05D000541 2.7e-09 66.2 152 32.2
SEGI_07762 Sequoiadendron giganteum HOM05D052445 ORTHO05D000541 4.6e-09 65.5 183 28.4
GSVIVG01034361001 Vitis vinifera HOM05D000727 ORTHO05D000541 6.1e-09 65.1 157 28.7
Ah.01g011600 Amaranthus hybridus HOM05D000727 ORTHO05D000541 7.9e-09 64.7 168 31.0
CDE04G2894 Ceratophyllum demersum HOM05D004203 ORTHO05D004830 7.9e-09 64.7 135 31.1
PSO206G0034 Papaver somniferum HOM05D000727 ORTHO05D000541 7.9e-09 64.7 152 31.6
MSTRG.13668 Avicennia marina HOM05D000727 ORTHO05D000541 1.0e-08 64.3 189 30.2
AUR62017747 Chenopodium quinoa HOM05D000727 ORTHO05D000541 1.0e-08 64.3 152 30.9
TAR622G0466 Trochodendron aralioides HOM05D000727 ORTHO05D000541 1.0e-08 64.3 164 29.3
Os08g0101100 Oryza sativa ssp. japonica HOM05D000727 ORTHO05D000541 1.3e-08 63.9 158 29.7
AUR62032906 Chenopodium quinoa HOM05D000727 ORTHO05D000541 1.8e-08 63.5 152 28.9
Gohir.D12G136500 Gossypium hirsutum HOM05D000727 ORTHO05D000541 1.8e-08 63.5 152 30.3
Gorai.008G147700 Gossypium raimondii HOM05D000727 ORTHO05D000541 1.8e-08 63.5 152 30.3
HanXRQChr17g0540661 Helianthus annuus HOM05D000727 ORTHO05D000541 2.3e-08 63.2 165 29.1
PGR044G1367 Punica granatum HOM05D000727 ORTHO05D000541 2.3e-08 63.2 184 27.2
SalBow2G1580 Salvia bowleyana HOM05D000727 ORTHO05D000541 2.3e-08 63.2 159 30.2
Gohir.A12G133000 Gossypium hirsutum HOM05D000727 ORTHO05D000541 3.0e-08 62.8 152 31.6
Nn3g18557 Nelumbo nucifera HOM05D000727 ORTHO05D000541 5.1e-08 62.0 164 28.7
Actinidia04069 Actinidia chinensis HOM05D000727 ORTHO05D000541 6.7e-08 61.6 201 26.4
Aqoxy3G04324 Aquilegia oxysepala HOM05D000727 ORTHO05D000541 6.7e-08 61.6 149 32.2
CsaV3_5G021890 Cucumis sativus L. HOM05D000727 ORTHO05D000541 8.7e-08 61.2 154 28.6
MD13G1001900 Malus domestica HOM05D000727 ORTHO05D000541 8.7e-08 61.2 186 29.0
Sed0009333 Sechium edule HOM05D000727 ORTHO05D000541 8.7e-08 61.2 154 27.9
SGA_v2.0_scaffold127G33972 Striga asiatica HOM05D000727 ORTHO05D000541 8.7e-08 61.2 171 30.4
Lj1C1068T20 Lonicera japonica HOM05D007902 ORTHO05D009839 1.9e-07 60.1 74 44.6
Dinv02932 Davidia involucrata HOM05D000727 ORTHO05D000541 2.5e-07 59.7 189 25.9
Prupe.1G350700 Prunus persica HOM05D000727 ORTHO05D000541 2.5e-07 59.7 150 26.7
SEGI_37508 Sequoiadendron giganteum HOM05D000727 ORTHO05D000541 2.5e-07 59.7 188 26.1
Sc25g0001400 Simmondsia chinensis HOM05D000727 ORTHO05D000541 2.5e-07 59.7 170 27.1
BcaNung01853 Brassica carinata HOM05D003223 ORTHO05D014735 3.3e-07 59.3 49 63.3
Oeu036108.1 Olea europaea HOM05D000727 ORTHO05D000541 3.3e-07 59.3 170 31.2
AL6G34700 Arabidopsis lyrata HOM05D000727 ORTHO05D000541 4.3e-07 58.9 173 28.3
AT5G23420 Arabidopsis thaliana HOM05D000727 ORTHO05D000541 4.3e-07 58.9 173 28.3
COL.COLO4_33133 Corchorus olitorius HOM05D000727 ORTHO05D000541 4.3e-07 58.9 171 29.8
Nitab4.5_0002707g0040 Nicotiana tabacum HOM05D000727 ORTHO05D000541 4.3e-07 58.9 171 29.2
RhsimUnG0102400 Rhododendron simsii HOM05D000727 ORTHO05D000541 4.3e-07 58.9 168 28.6
Cfa018677 Carpinus fangiana HOM05D000727 ORTHO05D000541 5.7e-07 58.5 151 29.8
MBI03_g40382_MAGBIO Magnolia biondii HOM05D034203 ORTHO05D009839 5.7e-07 58.5 75 41.3
THA.LOC104818386 Tarenaya hassleriana HOM05D000727 ORTHO05D000541 5.7e-07 58.5 174 28.2
Haze_17405 Corylus avellana HOM05D000727 ORTHO05D000541 7.4e-07 58.2 169 27.8
Dinv17654 Davidia involucrata HOM05D000727 ORTHO05D000541 7.4e-07 58.2 187 27.8
DCAR_030351 Daucus carota HOM05D000727 ORTHO05D000541 9.7e-07 57.8 160 27.5
PGSC0003DMG400025304 Solanum tuberosum HOM05D000727 ORTHO05D000541 9.7e-07 57.8 165 29.7
TWI53G1801 Tripterygium wilfordii HOM05D000727 ORTHO05D000541 9.7e-07 57.8 145 30.3
TWI74G1375 Tripterygium wilfordii HOM05D000727 ORTHO05D000541 9.7e-07 57.8 148 29.1
Atru.chr11.63 Acer truncatum HOM05D000727 ORTHO05D000541 1.6e-06 57.0 181 27.6
AL6G30600 Arabidopsis lyrata HOM05D000727 ORTHO05D000541 1.6e-06 57.0 175 28.6
Carub.0006s2120 Capsella rubella HOM05D000727 ORTHO05D000541 1.6e-06 57.0 174 26.4
Aa31LG11G2850 Aethionema arabicum HOM05D000727 ORTHO05D000541 2.2e-06 56.6 175 28.6
CAN.G419.9 Capsicum annuum HOM05D000727 ORTHO05D000541 2.8e-06 56.2 167 28.7
HPP92_014761 Vanilla planifolia HOM05D000727 ORTHO05D000541 2.8e-06 56.2 168 28.6
BcaB04g19869 Brassica carinata HOM05D000727 ORTHO05D000541 3.7e-06 55.8 181 28.7
Hma1.2p1_0513F.1_g169510 Hydrangea macrophylla HOM05D000727 ORTHO05D000541 3.7e-06 55.8 190 28.9
Migut.E00666 Erythranthe guttata HOM05D000727 ORTHO05D000541 4.8e-06 55.5 181 28.7
Sopen04g004000 Solanum pennellii HOM05D000727 ORTHO05D000541 4.8e-06 55.5 165 29.1
Lj1A965T42 Lonicera japonica HOM05D007902 ORTHO05D009839 6.3e-06 55.1 73 41.1
Lj5g0017221 Lotus japonicus HOM05D000727 ORTHO05D000541 6.3e-06 55.1 146 26.7
TPR.G4017 Trifolium pratense HOM05D000727 ORTHO05D000541 6.3e-06 55.1 147 26.5
unitig_699.g19642 Utricularia gibba HOM05D001166 ORTHO05D000992 6.3e-06 55.1 127 31.5
Pp3c17_7580 Physcomitrium patens HOM05D000727 ORTHO05D000541 8.2e-06 54.7 175 26.3


User provided reference genes

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