Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_05928_v3 Cicer arietinum L. HOM05D004696 ORTHO05D005645 4.0e-93 344.7 175 100.0
Ca_06214_v3 Cicer arietinum L. HOM05D004696 ORTHO05D005645 2.3e-88 328.9 172 94.8
Psat7g133720 Pisum sativum HOM05D004696 ORTHO05D005645 2.2e-67 259.2 201 66.7
Medtr5g081850 Medicago truncatula HOM05D004696 ORTHO05D005645 1.1e-66 256.9 201 64.7
Psat1g042400 Pisum sativum HOM05D004696 ORTHO05D005645 1.6e-65 253.1 201 65.2
TPR.G8061 Trifolium pratense HOM05D004696 ORTHO05D005645 2.6e-63 245.7 202 62.4
VMungo0331G1167 Vigna mungo HOM05D004696 ORTHO05D005645 2.6e-63 245.7 201 64.2
Lalb_Chr17g0338851 Lupinus albus HOM05D004696 ORTHO05D005645 3.3e-63 245.4 201 63.7
Phvul.010G140500 Phaseolus vulgaris HOM05D004696 ORTHO05D005645 1.7e-62 243.0 201 64.2
Glyma.01G218300 Glycine max HOM05D004696 ORTHO05D005645 1.8e-61 239.6 201 64.7
arahy.Tifrunner.gnm1.ann1.09FGJA Arachis hypogaea HOM05D004696 ORTHO05D005645 3.1e-61 238.8 172 70.9
Lalb_Chr10g0096421 Lupinus albus HOM05D004696 ORTHO05D005645 4.1e-61 238.4 201 63.2
Glyma.11G024900 Glycine max HOM05D004696 ORTHO05D005645 7.0e-61 237.7 201 64.7
Phvul.003G045400 Phaseolus vulgaris HOM05D004696 ORTHO05D005645 7.0e-61 237.7 201 62.7
Lj2g0021207 Lotus japonicus HOM05D004696 ORTHO05D005645 2.9e-59 232.3 198 62.6
Glyma.14G125600 Glycine max HOM05D004696 ORTHO05D005645 4.7e-57 224.9 192 62.0
arahy.Tifrunner.gnm1.ann1.61U0KE Arachis hypogaea HOM05D004696 ORTHO05D005645 8.0e-57 224.2 210 58.6
arahy.Tifrunner.gnm1.ann1.NQRV37 Arachis hypogaea HOM05D004696 ORTHO05D005645 4.0e-56 221.9 210 58.6
ClCG06G002080 Citrullus lanatus HOM05D004696 ORTHO05D005645 4.0e-56 221.9 176 61.9
Lj4g0004970 Lotus japonicus HOM05D004696 ORTHO05D005645 4.0e-56 221.9 198 59.1
arahy.Tifrunner.gnm1.ann1.BY2PXQ Arachis hypogaea HOM05D004696 ORTHO05D005645 8.8e-56 220.7 210 57.6
Manes.11G020900 Manihot esculenta HOM05D004696 ORTHO05D005645 3.4e-55 218.8 198 59.6
Manes.03G211700 Manihot esculenta HOM05D004696 ORTHO05D005645 2.8e-54 215.7 199 58.3
Cfa015727 Carpinus fangiana HOM05D004696 ORTHO05D005645 9.1e-53 210.7 198 56.1
QL06p014174 Quercus lobata HOM05D004696 ORTHO05D005645 9.1e-53 210.7 208 53.4
Lj6C700T16 Lonicera japonica HOM05D004696 ORTHO05D005645 2.7e-52 209.1 172 60.5
Cpa.g.sc146.25 Carica papaya HOM05D004696 ORTHO05D005645 3.5e-52 208.8 198 57.6
Haze_00771 Corylus avellana HOM05D004696 ORTHO05D005645 3.5e-52 208.8 198 56.1
CsaV3_6G008150 Cucumis sativus L. HOM05D004696 ORTHO05D005645 2.2e-51 206.1 198 54.0
CiPaw.02G069300 Carya illinoinensis HOM05D004696 ORTHO05D005645 3.8e-51 205.3 198 54.5
Ciclev10005920m.g Citrus clementina HOM05D004696 ORTHO05D005645 3.8e-51 205.3 199 54.8
Sed0019137 Sechium edule HOM05D004696 ORTHO05D005645 4.2e-50 201.8 198 55.1
Nitab4.5_0008086g0030 Nicotiana tabacum HOM05D004696 ORTHO05D005645 1.2e-49 200.3 188 57.4
Sabra02G0114900 Salix brachista HOM05D004696 ORTHO05D005645 1.2e-49 200.3 196 56.1
Potri.008G206400 Populus trichocarpa HOM05D004696 ORTHO05D005645 2.1e-49 199.5 196 55.6
Thecc.04G312600 Theobroma cacao HOM05D004696 ORTHO05D005645 2.1e-49 199.5 197 52.8
Peaxi162Scf00164g00414 Petunia axillaris HOM05D004696 ORTHO05D005645 4.7e-49 198.4 172 60.5
CSS0007787 Camellia sinensis var. sinensis HOM05D004696 ORTHO05D005645 1.8e-48 196.4 199 53.8
Prupe.1G105700 Prunus persica HOM05D004696 ORTHO05D005645 1.8e-48 196.4 196 53.6
PGR031G3538 Punica granatum HOM05D004696 ORTHO05D005645 2.3e-48 196.1 198 55.6
Sabra08G0150400 Salix brachista HOM05D004696 ORTHO05D005645 2.3e-48 196.1 216 51.4
MD13G1140700 Malus domestica HOM05D004696 ORTHO05D005645 4.0e-48 195.3 195 52.8
Gorai.005G071900 Gossypium raimondii HOM05D004696 ORTHO05D005645 5.2e-48 194.9 201 51.7
Lsat_1_v5_gn_1_39920 Lactuca sativa HOM05D004696 ORTHO05D005645 6.8e-48 194.5 198 53.0
TWI73G0566 Tripterygium wilfordii HOM05D004696 ORTHO05D005645 1.2e-47 193.7 198 54.0
MD07G1065600 Malus domestica HOM05D004696 ORTHO05D005645 1.5e-47 193.4 195 52.8
Gohir.A02G058200 Gossypium hirsutum HOM05D004696 ORTHO05D005645 2.6e-47 192.6 201 51.7
TWI09G0971 Tripterygium wilfordii HOM05D004696 ORTHO05D005645 2.6e-47 192.6 198 53.5
Atru.chr4.3144 Acer truncatum HOM05D004696 ORTHO05D005645 3.4e-47 192.2 194 51.5
CANSAT78G0332 Cannabis sativa HOM05D004696 ORTHO05D005645 3.4e-47 192.2 197 51.8
Gohir.D02G064000 Gossypium hirsutum HOM05D004696 ORTHO05D005645 4.4e-47 191.8 201 51.2
CAN.G305.38 Capsicum annuum HOM05D004696 ORTHO05D005645 5.7e-47 191.4 199 54.8
Solyc05g053220.3 Solanum lycopersicum HOM05D004696 ORTHO05D005645 7.5e-47 191.0 199 54.3
Sopen05g031730 Solanum pennellii HOM05D004696 ORTHO05D005645 7.5e-47 191.0 199 54.3
MD16G1136700 Malus domestica HOM05D004696 ORTHO05D005645 9.8e-47 190.7 195 53.8
Duzib151G0078 Durio zibethinus HOM05D004696 ORTHO05D005645 1.3e-46 190.3 197 50.8
Potri.010G002100 Populus trichocarpa HOM05D004696 ORTHO05D005645 2.2e-46 189.5 192 53.6
PGSC0003DMG400027150 Solanum tuberosum HOM05D004696 ORTHO05D005645 2.2e-46 189.5 199 53.8
Dinv29511 Davidia involucrata HOM05D004696 ORTHO05D005645 2.8e-46 189.1 198 53.0
Actinidia01063 Actinidia chinensis HOM05D004696 ORTHO05D005645 3.7e-46 188.7 171 57.3
Sabra02G0116500 Salix brachista HOM05D004696 ORTHO05D005645 3.7e-46 188.7 216 50.9
SGA_v2.0_scaffold69G23291 Striga asiatica HOM05D004696 ORTHO05D005645 4.9e-46 188.3 176 56.2
Ah.06g192450 Amaranthus hybridus HOM05D004696 ORTHO05D005645 1.1e-45 187.2 199 50.8
Eucgr.B03956 Eucalyptus grandis HOM05D004696 ORTHO05D005645 1.1e-45 187.2 199 51.8
Dinv18020 Davidia involucrata HOM05D004696 ORTHO05D005645 1.8e-45 186.4 198 53.0
FvH4_4g21490 Fragaria vesca HOM05D004696 ORTHO05D005645 1.8e-45 186.4 195 54.4
FAN12G0616 Fragaria x ananassa HOM05D004696 ORTHO05D005645 1.8e-45 186.4 195 54.4
Rhsim04G0248200 Rhododendron simsii HOM05D004696 ORTHO05D005645 1.8e-45 186.4 192 53.6
TAR629G2307 Trochodendron aralioides HOM05D004696 ORTHO05D005645 1.8e-45 186.4 198 52.5
vmacro08011 Vaccinium macrocarpon HOM05D004696 ORTHO05D005645 1.8e-45 186.4 211 49.3
Ah.16g105210 Amaranthus hybridus HOM05D004696 ORTHO05D005645 2.4e-45 186.0 199 50.8
HanXRQChr09g0238571 Helianthus annuus HOM05D004696 ORTHO05D005645 5.4e-45 184.9 198 51.5
Actinidia22921 Actinidia chinensis HOM05D004696 ORTHO05D005645 9.1e-45 184.1 197 50.3
Sc17g0002920 Simmondsia chinensis HOM05D004696 ORTHO05D005645 9.1e-45 184.1 202 51.0
RcHm_v2.0_Chr4g0427441 Rosa chinensis HOM05D004696 ORTHO05D005645 1.6e-44 183.3 195 52.3
Lsat_1_v5_gn_6_92581 Lactuca sativa HOM05D004696 ORTHO05D005645 2.0e-44 183.0 198 51.0
EL10Ac4g08571 Beta vulgaris HOM05D004696 ORTHO05D005645 3.5e-44 182.2 193 51.8
GSVIVG01017685001 Vitis vinifera HOM05D004696 ORTHO05D005645 5.9e-44 181.4 198 49.0
FAN07G1680 Fragaria x ananassa HOM05D004696 ORTHO05D005645 7.7e-44 181.0 195 52.3
Aqoxy5G04183 Aquilegia oxysepala HOM05D004696 ORTHO05D005645 2.3e-43 179.5 199 49.7
Aqoxy4G02417 Aquilegia oxysepala HOM05D004696 ORTHO05D005645 5.0e-43 178.3 199 48.7
AUR62020507 Chenopodium quinoa HOM05D004696 ORTHO05D005645 8.6e-43 177.6 190 52.1
CDE06G2579 Ceratophyllum demersum HOM05D005139 ORTHO05D006125 1.5e-42 176.8 197 51.8
MELO3C035238.2 Cucumis melo HOM05D004696 ORTHO05D005645 5.6e-42 174.9 142 57.7
Os02g0730500 Oryza sativa ssp. japonica HOM05D004696 ORTHO05D005645 1.2e-41 173.7 198 48.5
THA.LOC104827108 Tarenaya hassleriana HOM05D004696 ORTHO05D005645 2.1e-41 172.9 192 47.9
ECA220G0002 Erigeron canadensis HOM05D004696 ORTHO05D005645 6.1e-41 171.4 186 51.6
MSTRG.24614 Avicennia marina HOM05D004696 ORTHO05D005645 8.0e-41 171.0 193 51.3
MBI03_g01483_MAGBIO Magnolia biondii HOM05D004696 ORTHO05D005645 1.8e-40 169.9 185 50.3
Zm00001eb189970 Zea mays HOM05D004696 ORTHO05D005645 1.5e-39 166.8 198 47.0
Aa31LG2G12130 Aethionema arabicum HOM05D004696 ORTHO05D005645 2.6e-39 166.0 184 48.9
Migut.N00002 Erythranthe guttata HOM05D004696 ORTHO05D005645 2.6e-39 166.0 199 46.7
SalBow2G0725 Salvia bowleyana HOM05D001196 ORTHO05D005911 5.7e-39 164.9 197 47.2
AUR62015697 Chenopodium quinoa HOM05D004696 ORTHO05D005645 1.7e-38 163.3 181 49.2
Nitab4.5_0000745g0120 Nicotiana tabacum HOM05D004696 ORTHO05D005645 1.7e-38 163.3 172 53.5
SGA_v2.0_scaffold49G18399 Striga asiatica HOM05D004696 ORTHO05D005645 2.9e-38 162.5 195 46.7
Cc03_g00150 Coffea canephora HOM05D004696 ORTHO05D005645 6.4e-38 161.4 209 43.1
CARHR185500 Cardamine hirsuta HOM05D004696 ORTHO05D005645 1.1e-37 160.6 195 45.6
Cc00_g15640 Coffea canephora HOM05D004696 ORTHO05D005645 1.1e-37 160.6 211 46.0
AL6G41010 Arabidopsis lyrata HOM05D004696 ORTHO05D005645 4.1e-37 158.7 196 44.9
AT5G30495 Arabidopsis thaliana HOM05D004696 ORTHO05D005645 9.2e-37 157.5 197 44.2
Thhalv10005420m.g Eutrema salsugineum HOM05D004696 ORTHO05D005645 4.6e-36 155.2 195 45.1
Aqoxy3G02973 Aquilegia oxysepala HOM05D004696 ORTHO05D005645 1.7e-35 153.3 159 52.2
Carub.0002s0865 Capsella rubella HOM05D004696 ORTHO05D005645 2.3e-35 152.9 193 45.6
Hma1.2p1_2234F.1_g317690 Hydrangea macrophylla HOM05D004696 ORTHO05D000003 2.9e-35 152.5 262 38.2
Oeu022705.1 Olea europaea HOM05D004696 ORTHO05D005645 2.9e-35 152.5 176 49.4
PSO832G1751 Papaver somniferum HOM05D004696 ORTHO05D005645 2.9e-35 152.5 201 47.3
unitig_8.g2889 Utricularia gibba HOM05D004696 ORTHO05D005645 3.9e-35 152.1 188 43.6
BcaC04g23715 Brassica carinata HOM05D004696 ORTHO05D005645 1.5e-34 150.2 192 43.8
PSO063G5897 Papaver somniferum HOM05D004696 ORTHO05D005645 4.3e-34 148.7 198 46.5
Sp2g19960 Schrenkiella parvula HOM05D004696 ORTHO05D005645 9.5e-34 147.5 198 43.9
BcaB04g19639 Brassica carinata HOM05D004696 ORTHO05D005645 2.1e-33 146.4 195 42.1
BraA09t36143Z Brassica rapa HOM05D004696 ORTHO05D005645 2.8e-33 146.0 189 42.9
BolC9t53474H Brassica oleracea HOM05D004696 ORTHO05D005645 3.6e-33 145.6 189 41.8
C09p05450 Brassica napus HOM05D004696 ORTHO05D005645 4.7e-33 145.2 189 41.8
A09p05040 Brassica napus HOM05D004696 ORTHO05D005645 8.0e-33 144.4 189 42.3
AT1G54770 Arabidopsis thaliana HOM05D004696 ORTHO05D005645 3.1e-32 142.5 198 44.9
Oeu037627.2 Olea europaea HOM05D004696 ORTHO05D005645 6.8e-32 141.4 301 34.2
PSO478G3068 Papaver somniferum HOM05D004696 ORTHO05D005645 8.9e-32 141.0 192 43.8
PSO782G4648 Papaver somniferum HOM05D004696 ORTHO05D005645 1.5e-31 140.2 192 43.2
Mapoly0084s0020 Marchantia polymorpha HOM05D004696 ORTHO05D005645 6.6e-27 124.8 173 41.0
SHI04008 Sapria himalayana HOM05D004696 ORTHO05D005645 2.8e-25 119.4 161 42.2
Nn3g16891 Nelumbo nucifera HOM05D004696 ORTHO05D005645 3.6e-25 119.0 118 49.2
Pp3c7_450 Physcomitrium patens HOM05D004696 ORTHO05D005645 8.9e-24 114.4 168 40.5
SEGI_16783 Sequoiadendron giganteum HOM05D004696 ORTHO05D005645 1.5e-23 113.6 170 41.2
COL.COLO4_34519 Corchorus olitorius HOM05D004696 ORTHO05D005645 4.4e-23 112.1 94 60.6
ECA248G3148 Erigeron canadensis HOM05D004696 ORTHO05D005645 5.8e-23 111.7 192 39.6
SEGI_41631 Sequoiadendron giganteum HOM05D004696 ORTHO05D005645 7.5e-23 111.3 188 38.3
CSS0046364 Camellia sinensis var. sinensis HOM05D004696 ORTHO05D005645 9.8e-23 110.9 101 53.5
SMO139G0013 Selaginella moellendorffii HOM05D004696 ORTHO05D005645 1.7e-22 110.2 182 39.0
RcHm_v2.0_Chr4g0427481 Rosa chinensis HOM05D004696 ORTHO05D005645 3.7e-22 109.0 103 52.4
CSS0022818 Camellia sinensis var. sinensis HOM05D004696 ORTHO05D005645 2.4e-21 106.3 101 51.5
Lj4g0014561 Lotus japonicus HOM05D004696 ORTHO05D005645 4.1e-21 105.5 77 68.8
Lj4g0016234 Lotus japonicus HOM05D004696 ORTHO05D005645 4.1e-21 105.5 77 68.8
Lj2g0010517 Lotus japonicus HOM05D004696 ORTHO05D005645 5.1e-19 98.6 125 48.0
CBR_g41139 Chara braunii HOM05D004696 ORTHO05D005645 5.6e-18 95.1 165 34.5
HPP92_006011 Vanilla planifolia HOM05D004696 ORTHO05D005645 1.8e-16 90.1 118 37.3
ATR1127G170 Amborella trichopoda HOM05D004696 ORTHO05D005645 4.0e-16 89.0 114 40.4
Zm00001eb253530 Zea mays HOM05D004696 ORTHO05D005645 5.2e-16 88.6 78 57.7
ECA149G0001 Erigeron canadensis HOM05D004696 ORTHO05D005645 3.4e-15 85.9 182 39.0
MCO05G434 Micromonas commoda HOM05D004696 ORTHO05D005645 7.1e-13 78.2 152 33.6
PRCOL_00000839 Prasinoderma coloniale HOM05D004696 ORTHO05D005645 8.6e-11 71.2 103 37.9
TAR371G0358 Trochodendron aralioides HOM05D004696 ORTHO05D005645 3.3e-10 69.3 59 62.7
BcaC04g19932 Brassica carinata HOM05D004696 ORTHO05D005645 2.4e-08 63.2 107 33.6
BolC9t57816H Brassica oleracea HOM05D004696 ORTHO05D005645 4.0e-08 62.4 107 34.6
AagrBONN_evm.TU.Sc2ySwM_368.1627 Anthoceros agrestis HOM05D004696 ORTHO05D005645 8.9e-08 61.2 129 30.2
Aqoxy5G04095 Aquilegia oxysepala HOM05D004696 ORTHO05D005645 1.2e-07 60.8 83 49.4
Lj2g0009432 Lotus japonicus HOM05D004696 ORTHO05D005645 1.5e-07 60.5 67 49.3
Cfa024688 Carpinus fangiana HOM05D004696 ORTHO05D005645 3.8e-06 55.8 116 31.0
CSS0030909 Camellia sinensis var. sinensis HOM05D004696 ORTHO05D005645 8.4e-06 54.7 101 34.7


User provided reference genes

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