Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_05904_v3 Cicer arietinum L. HOM05D005294 ORTHO05D006720 3.4e-239 831.2 422 100.0
TPR.G25848 Trifolium pratense HOM05D005294 ORTHO05D006720 1.9e-184 649.4 417 75.5
Medtr5g080780 Medicago truncatula HOM05D005294 ORTHO05D006720 1.1e-181 640.2 415 75.4
Glyma.02G250900 Glycine max HOM05D005294 ORTHO05D006720 3.7e-177 625.2 422 74.4
Glyma.14G065800 Glycine max HOM05D005294 ORTHO05D006720 6.4e-177 624.4 422 73.9
Psat2g038680 Pisum sativum HOM05D005294 ORTHO05D006720 6.4e-177 624.4 418 73.9
LjContig00141g0021499 Lotus japonicus HOM05D005294 ORTHO05D006720 1.1e-173 613.6 421 71.5
VMungo0647G0234 Vigna mungo HOM05D005294 ORTHO05D006720 1.4e-171 606.7 423 72.1
Phvul.008G230500 Phaseolus vulgaris HOM05D005294 ORTHO05D006720 3.4e-170 602.1 426 69.7
Lalb_Chr18g0053011 Lupinus albus HOM05D005294 ORTHO05D006720 3.6e-156 555.4 423 65.5
Lalb_Chr15g0084501 Lupinus albus HOM05D005294 ORTHO05D006720 2.6e-154 549.3 426 65.5
arahy.Tifrunner.gnm1.ann1.CWN4E9 Arachis hypogaea HOM05D005294 ORTHO05D006720 8.4e-153 544.3 422 64.2
arahy.Tifrunner.gnm1.ann1.T94LMP Arachis hypogaea HOM05D005294 ORTHO05D006720 3.2e-152 542.3 422 64.0
Haze_25869 Corylus avellana HOM05D005294 ORTHO05D006720 6.7e-150 534.6 422 63.0
CiPaw.03G219800 Carya illinoinensis HOM05D005294 ORTHO05D006720 5.6e-149 531.6 422 61.4
QL02p063470 Quercus lobata HOM05D005294 ORTHO05D006720 7.4e-149 531.2 424 62.3
Manes.16G105100 Manihot esculenta HOM05D005294 ORTHO05D006720 1.4e-144 516.9 421 61.0
CANSAT64G1758 Cannabis sativa HOM05D005294 ORTHO05D006720 2.4e-144 516.2 425 61.4
Potri.013G068200 Populus trichocarpa HOM05D005294 ORTHO05D006720 5.5e-144 515.0 420 60.5
MD15G1202500 Malus domestica HOM05D005294 ORTHO05D006720 1.6e-143 513.5 426 59.4
Prupe.7G214700 Prunus persica HOM05D005294 ORTHO05D006720 3.0e-142 509.2 419 60.6
Cfa003134 Carpinus fangiana HOM05D005294 ORTHO05D006720 6.7e-142 508.1 422 61.1
Atru.chr7.1522 Acer truncatum HOM05D005294 ORTHO05D006720 2.5e-141 506.1 422 58.1
GSVIVG01015248001 Vitis vinifera HOM05D005294 ORTHO05D006720 2.1e-140 503.1 419 58.0
Ciclev10008203m.g Citrus clementina HOM05D005294 ORTHO05D006720 2.8e-140 502.7 422 58.3
MD02G1072700 Malus domestica HOM05D005294 ORTHO05D006720 3.7e-140 502.3 426 58.2
RcHm_v2.0_Chr2g0092581 Rosa chinensis HOM05D005294 ORTHO05D006720 1.1e-139 500.7 418 59.6
Sabra13G0059500 Salix brachista HOM05D005294 ORTHO05D006720 6.5e-137 491.5 472 54.4
COL.COLO4_18242 Corchorus olitorius HOM05D005294 ORTHO05D006720 1.4e-136 490.3 423 56.7
FAN19G0312 Fragaria x ananassa HOM05D005294 ORTHO05D006720 2.5e-136 489.6 417 59.2
FAN26G0700 Fragaria x ananassa HOM05D005294 ORTHO05D006720 4.2e-136 488.8 417 59.2
FvH4_1g06810 Fragaria vesca HOM05D005294 ORTHO05D006720 9.3e-136 487.6 417 59.0
TWI34G0876 Tripterygium wilfordii HOM05D005294 ORTHO05D006720 1.2e-135 487.3 422 58.3
FAN23G1873 Fragaria x ananassa HOM05D005294 ORTHO05D006720 1.6e-135 486.9 417 59.0
Thecc.09G094300 Theobroma cacao HOM05D005294 ORTHO05D006720 2.7e-135 486.1 423 56.5
Eucgr.C03688 Eucalyptus grandis HOM05D005294 ORTHO05D006720 3.0e-134 482.6 423 55.6
FAN26G2354 Fragaria x ananassa HOM05D005294 ORTHO05D006720 3.0e-134 482.6 417 58.8
Duzib168G2227 Durio zibethinus HOM05D005294 ORTHO05D006720 2.5e-133 479.6 423 55.8
TWI63G0491 Tripterygium wilfordii HOM05D005294 ORTHO05D006720 5.7e-133 478.4 420 57.1
Dinv36732 Davidia involucrata HOM05D005294 ORTHO05D006720 1.6e-132 476.9 425 56.2
TAR624G1381 Trochodendron aralioides HOM05D005294 ORTHO05D006720 2.8e-132 476.1 423 56.5
Lj7C671G8 Lonicera japonica HOM05D005294 ORTHO05D006720 4.1e-131 472.2 423 57.0
Actinidia39748 Actinidia chinensis HOM05D005294 ORTHO05D006720 4.5e-130 468.8 422 55.5
Cpa.g.sc32.101 Carica papaya HOM05D005294 ORTHO05D006720 5.9e-130 468.4 424 56.4
CSS0007070 Camellia sinensis var. sinensis HOM05D005294 ORTHO05D006720 8.5e-129 464.5 421 54.6
Gohir.D06G069100 Gossypium hirsutum HOM05D005294 ORTHO05D006720 8.5e-129 464.5 425 55.8
Gorai.010G080700 Gossypium raimondii HOM05D005294 ORTHO05D006720 8.5e-129 464.5 425 55.8
DCAR_012006 Daucus carota HOM05D005294 ORTHO05D006720 1.1e-128 464.2 422 54.3
Gohir.A06G070500 Gossypium hirsutum HOM05D005294 ORTHO05D006720 1.1e-128 464.2 425 55.8
Rhsim05G0031400 Rhododendron simsii HOM05D005294 ORTHO05D006720 1.4e-128 463.8 422 55.7
CSS0004577 Camellia sinensis var. sinensis HOM05D005294 ORTHO05D006720 5.5e-128 461.8 421 54.2
vmacro10822 Vaccinium macrocarpon HOM05D005294 ORTHO05D006720 5.5e-128 461.8 425 56.2
Sc08g0008210 Simmondsia chinensis HOM05D005294 ORTHO05D006720 9.3e-128 461.1 421 54.9
CsaV3_2G001600 Cucumis sativus L. HOM05D005294 ORTHO05D006720 1.6e-127 460.3 426 55.9
ClCG11G001870 Citrullus lanatus HOM05D005294 ORTHO05D006720 7.9e-127 458.0 426 55.4
THA.LOC104811733 Tarenaya hassleriana HOM05D005294 ORTHO05D006720 1.5e-125 453.8 424 52.6
PGR102G3363 Punica granatum HOM05D005294 ORTHO05D006720 2.5e-125 453.0 422 51.4
Nitab4.5_0004011g0060 Nicotiana tabacum HOM05D005294 ORTHO05D006720 3.3e-125 452.6 422 54.3
Cc06_g10960 Coffea canephora HOM05D005294 ORTHO05D006720 7.4e-125 451.4 425 53.4
Nitab4.5_0001492g0020 Nicotiana tabacum HOM05D005294 ORTHO05D006720 4.8e-124 448.7 420 53.6
Hund05510 Selenicereus undatus HOM05D005294 ORTHO05D006720 2.4e-123 446.4 425 51.1
ECA234G1346 Erigeron canadensis HOM05D005294 ORTHO05D006720 4.1e-123 445.7 424 51.9
Sed0020374 Sechium edule HOM05D005294 ORTHO05D006720 2.6e-122 443.0 417 53.2
HanXRQChr12g0355321 Helianthus annuus HOM05D005294 ORTHO05D006720 5.9e-122 441.8 416 52.6
AUR62025414 Chenopodium quinoa HOM05D005294 ORTHO05D006720 2.9e-121 439.5 422 51.7
Sopen02g017740 Solanum pennellii HOM05D005294 ORTHO05D006720 8.5e-121 438.0 419 54.2
PGSC0003DMG400033362 Solanum tuberosum HOM05D005294 ORTHO05D006720 8.5e-121 438.0 423 52.7
EL10Ac7g17721 Beta vulgaris HOM05D005294 ORTHO05D006720 1.1e-120 437.6 419 51.6
AUR62008827 Chenopodium quinoa HOM05D005294 ORTHO05D006720 2.5e-120 436.4 422 51.2
CARHR270490 Cardamine hirsuta HOM05D005294 ORTHO05D006720 3.2e-120 436.0 420 49.3
Lsat_1_v5_gn_5_146040 Lactuca sativa HOM05D005294 ORTHO05D006720 3.2e-120 436.0 423 52.2
Thhalv10013465m.g Eutrema salsugineum HOM05D005294 ORTHO05D006720 2.1e-119 433.3 420 49.3
Carub.0008s1722 Capsella rubella HOM05D005294 ORTHO05D006720 2.7e-119 433.0 420 49.0
AT5G56740 Arabidopsis thaliana HOM05D005294 ORTHO05D006720 6.1e-119 431.8 422 49.1
AL8G32570 Arabidopsis lyrata HOM05D005294 ORTHO05D006720 7.9e-119 431.4 422 48.6
BcaB01g04417 Brassica carinata HOM05D005294 ORTHO05D006720 2.3e-118 429.9 425 49.2
Solyc02g068580.1 Solanum lycopersicum HOM05D005294 ORTHO05D006720 2.3e-118 429.9 419 53.7
A03p13220 Brassica napus HOM05D005294 ORTHO05D006720 3.0e-118 429.5 422 49.3
BcaC01g06444 Brassica carinata HOM05D005294 ORTHO05D006720 3.9e-118 429.1 421 48.9
Migut.J00438 Erythranthe guttata HOM05D005294 ORTHO05D006720 3.9e-118 429.1 424 50.2
C03p15490 Brassica napus HOM05D005294 ORTHO05D006720 2.6e-117 426.4 422 49.1
BolC3t13987H Brassica oleracea HOM05D005294 ORTHO05D006720 3.3e-117 426.0 422 49.1
BraA03t10634Z Brassica rapa HOM05D005294 ORTHO05D006720 3.3e-117 426.0 422 48.6
PSO210G3043 Papaver somniferum HOM05D005294 ORTHO05D006720 4.4e-117 425.6 417 53.2
CAN.G142.7 Capsicum annuum HOM05D005294 ORTHO05D006720 2.2e-116 423.3 422 51.4
BraA10t43499Z Brassica rapa HOM05D005294 ORTHO05D006720 8.2e-116 421.4 418 49.5
PSO210G1233 Papaver somniferum HOM05D005294 ORTHO05D006720 8.2e-116 421.4 420 52.1
Ah.15g091540 Amaranthus hybridus HOM05D005294 ORTHO05D006720 3.1e-115 419.5 419 49.2
A10p14080 Brassica napus HOM05D005294 ORTHO05D006720 3.1e-115 419.5 418 49.5
Sp6g18490 Schrenkiella parvula HOM05D005294 ORTHO05D006720 3.1e-115 419.5 422 48.3
BcaB08g36064 Brassica carinata HOM05D005294 ORTHO05D006720 4.1e-115 419.1 422 48.6
MSTRG.19532 Avicennia marina HOM05D005294 ORTHO05D006720 5.3e-115 418.7 419 49.6
Peaxi162Scf01468g00004 Petunia axillaris HOM05D005294 ORTHO05D006720 2.0e-114 416.8 413 51.3
Aqoxy7G03926 Aquilegia oxysepala HOM05D005294 ORTHO05D006720 3.4e-114 416.0 430 50.5
MBI04_g06995_MAGBIO Magnolia biondii HOM05D005294 ORTHO05D006720 2.8e-108 396.4 416 48.6
SGA_v2.0_scaffold62G21576 Striga asiatica HOM05D005294 ORTHO05D006720 1.6e-106 390.6 457 44.6
Aa31LG3G12690 Aethionema arabicum HOM05D005294 ORTHO05D006720 1.7e-105 387.1 406 47.0
Haze_25870 Corylus avellana HOM05D005294 ORTHO05D006720 8.0e-103 378.3 387 53.0
Aqoxy4G01946 Aquilegia oxysepala HOM05D005294 ORTHO05D006720 3.3e-101 372.9 426 46.7
HPP92_009085 Vanilla planifolia HOM05D005294 ORTHO05D006720 1.6e-98 364.0 430 45.1
BcaC04g20057 Brassica carinata HOM05D005294 ORTHO05D006720 5.5e-96 355.5 417 43.6
ATR0705G179 Amborella trichopoda HOM05D005294 ORTHO05D006720 1.2e-93 347.8 419 43.0
unitig_26.g9161 Utricularia gibba HOM05D005294 ORTHO05D006720 2.0e-93 347.1 426 42.3
Os09g0347800 Oryza sativa ssp. japonica HOM05D005294 ORTHO05D006720 1.3e-92 344.4 417 45.3
MELO3C004615.2 Cucumis melo HOM05D005294 ORTHO05D006720 6.6e-89 332.0 285 57.9
Zm00001eb310550 Zea mays HOM05D005294 ORTHO05D006720 1.1e-88 331.3 418 45.0
C09p48310 Brassica napus HOM05D005294 ORTHO05D006720 7.3e-80 302.0 355 43.1
BolC9t57681H Brassica oleracea HOM05D005294 ORTHO05D006720 7.3e-80 302.0 355 43.1
Nn6g35397 Nelumbo nucifera HOM05D005294 ORTHO05D006720 2.4e-75 287.0 256 55.1
CDE09G1011 Ceratophyllum demersum HOM05D005294 ORTHO05D006720 3.9e-73 279.6 410 37.8
SHI02790 Sapria himalayana HOM05D005294 ORTHO05D006720 5.8e-69 265.8 363 42.1
SEGI_34717 Sequoiadendron giganteum HOM05D005294 ORTHO05D006720 9.8e-69 265.0 460 33.9
SGA_v2.0_scaffold10G05199 Striga asiatica HOM05D005294 ORTHO05D006720 3.5e-66 256.5 416 36.8
Oeu052126.1 Olea europaea HOM05D005294 ORTHO05D006720 5.6e-56 222.6 322 40.7
Pp3c15_19200 Physcomitrium patens HOM05D005294 ORTHO05D006720 2.0e-53 214.2 442 32.4
Mapoly0079s0005 Marchantia polymorpha HOM05D005294 ORTHO05D006720 9.2e-51 205.3 483 30.6
MBI14_g43979_MAGBIO Magnolia biondii HOM05D005294 ORTHO05D006720 1.2e-42 178.3 192 49.5
CBR_g45363 Chara braunii HOM05D005294 ORTHO05D006720 7.8e-42 175.6 365 32.9
Zm00001eb171070 Zea mays HOM05D005294 ORTHO05D006720 9.0e-38 162.2 162 50.6
Zm00001eb301910 Zea mays HOM05D005294 ORTHO05D006720 3.4e-37 160.2 162 50.0
RcHm_v2.0_Chr2g0093921 Rosa chinensis HOM05D005294 ORTHO05D006720 4.5e-37 159.8 117 64.1
RcHm_v2.0_Chr2g0093931 Rosa chinensis HOM05D005294 ORTHO05D006720 8.7e-33 145.6 128 55.5
Actinidia25279 Actinidia chinensis HOM05D005294 ORTHO05D006720 1.9e-32 144.4 151 49.0
Aa31LG3G12580 Aethionema arabicum HOM05D005294 ORTHO05D006720 2.1e-31 141.0 125 51.2
Aa31LG3G12620 Aethionema arabicum HOM05D005294 ORTHO05D006720 2.1e-31 141.0 125 51.2
Aa31sc2040G10 Aethionema arabicum HOM05D005294 ORTHO05D006720 2.8e-31 140.6 123 52.0
Aa31LG3G12670 Aethionema arabicum HOM05D004235 ORTHO05D005157 1.2e-29 135.2 222 37.4
MCO15G657 Micromonas commoda HOM05D005294 ORTHO05D006720 2.0e-29 134.4 416 25.5
PRCOL_00004982 Prasinoderma coloniale HOM05D005294 ORTHO05D006720 2.6e-29 134.0 327 28.4
CARHR271620 Cardamine hirsuta HOM05D005294 ORTHO05D006720 1.9e-27 127.9 99 59.6
Aqoxy4G01950 Aquilegia oxysepala HOM05D002435 ORTHO05D002550 7.9e-26 122.5 217 36.9
Cre03.g186500 Chlamydomonas reinhardtii HOM05D005294 ORTHO05D006720 2.0e-21 107.8 295 27.5
SMO281G0026 Selaginella moellendorffii HOM05D005294 ORTHO05D006720 1.2e-18 98.6 124 42.7
SMO244G0078 Selaginella moellendorffii HOM05D005294 ORTHO05D006720 1.1e-16 92.0 170 36.5
Aqoxy4G01951 Aquilegia oxysepala HOM05D005294 ORTHO05D006720 1.2e-10 72.0 65 55.4
Zm00001eb382850 Zea mays HOM05D005294 ORTHO05D006720 4.6e-10 70.1 67 49.3
Zm00001eb383990 Zea mays HOM05D005294 ORTHO05D006720 4.6e-10 70.1 67 49.3
SGA_v2.0_scaffold194G40752 Striga asiatica HOM05D005294 ORTHO05D006720 3.3e-08 63.9 73 42.5


User provided reference genes

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