Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_05826_v3 Cicer arietinum L. HOM05D006243 ORTHO05D007688 8.4e-189 663.7 372 100.0
Medtr5g078290 Medicago truncatula HOM05D006243 ORTHO05D007688 2.5e-153 545.8 432 76.9
LjContig00141g0011202 Lotus japonicus HOM05D006243 ORTHO05D007688 1.3e-144 516.9 429 70.4
Glyma.02G245300 Glycine max HOM05D006243 ORTHO05D007688 6.3e-144 514.6 431 71.2
Phvul.008G235800 Phaseolus vulgaris HOM05D006243 ORTHO05D007688 6.5e-141 504.6 430 69.8
Lalb_Chr10g0104381 Lupinus albus HOM05D006243 ORTHO05D007688 4.0e-130 468.8 441 67.6
Lalb_Chr17g0346141 Lupinus albus HOM05D006243 ORTHO05D007688 3.8e-117 425.6 433 63.7
Glyma.14G215400 Glycine max HOM05D006243 ORTHO05D007688 1.1e-116 424.1 383 68.1
arahy.Tifrunner.gnm1.ann1.Y3W4B5 Arachis hypogaea HOM05D006243 ORTHO05D007688 1.3e-109 400.6 440 60.7
CiPaw.03G071500 Carya illinoinensis HOM05D006243 ORTHO05D007688 6.6e-101 371.7 454 56.4
Atru.chr1.1900 Acer truncatum HOM05D006243 ORTHO05D007688 2.5e-100 369.8 452 57.3
arahy.Tifrunner.gnm1.ann1.SFD8TD Arachis hypogaea HOM05D006243 ORTHO05D007688 5.6e-100 368.6 280 81.8
Cfa007817 Carpinus fangiana HOM05D006243 ORTHO05D007688 2.8e-99 366.3 447 55.9
Haze_14258 Corylus avellana HOM05D006243 ORTHO05D007688 2.8e-99 366.3 444 56.5
Ciclev10011587m.g Citrus clementina HOM05D006243 ORTHO05D007688 1.4e-98 364.0 449 55.2
Potri.017G129100 Populus trichocarpa HOM05D006243 ORTHO05D007688 1.4e-98 364.0 450 55.3
Eucgr.J01597 Eucalyptus grandis HOM05D006243 ORTHO05D007688 4.0e-98 362.5 449 56.6
FAN28G0309 Fragaria x ananassa HOM05D006243 ORTHO05D007688 4.0e-98 362.5 446 55.4
FAN19G0552 Fragaria x ananassa HOM05D006243 ORTHO05D007688 6.8e-98 361.7 446 55.2
TAR629G1693 Trochodendron aralioides HOM05D006243 ORTHO05D007688 6.8e-98 361.7 460 54.8
GSVIVG01030779001 Vitis vinifera HOM05D006243 ORTHO05D007688 1.5e-97 360.5 443 56.7
FAN26G0580 Fragaria x ananassa HOM05D006243 ORTHO05D007688 2.0e-97 360.1 446 55.2
Cpa.g.sc67.47 Carica papaya HOM05D006243 ORTHO05D007688 7.5e-97 358.2 450 54.0
FvH4_1g28740 Fragaria vesca HOM05D006243 ORTHO05D007688 6.4e-96 355.1 446 54.7
Prupe.3G161300 Prunus persica HOM05D006243 ORTHO05D007688 8.3e-96 354.8 448 54.9
CSS0038083 Camellia sinensis var. sinensis HOM05D006243 ORTHO05D007688 3.2e-95 352.8 438 54.3
Thecc.04G115200 Theobroma cacao HOM05D006243 ORTHO05D007688 3.2e-95 352.8 444 56.8
RcHm_v2.0_Chr3g0493131 Rosa chinensis HOM05D006243 ORTHO05D007688 4.1e-95 352.4 446 54.3
Sabra17G0107600 Salix brachista HOM05D006243 ORTHO05D007688 4.1e-95 352.4 459 54.9
Psat2g047960 Pisum sativum HOM05D006243 ORTHO05D007688 7.0e-95 351.7 328 67.4
MD17G1259100 Malus domestica HOM05D006243 ORTHO05D007688 2.0e-94 350.1 451 55.0
Manes.01G117900 Manihot esculenta HOM05D006243 ORTHO05D007688 2.7e-94 349.7 449 55.2
CANSAT64G2718 Cannabis sativa HOM05D006243 ORTHO05D007688 3.5e-94 349.4 443 53.7
Nn4g24254 Nelumbo nucifera HOM05D006243 ORTHO05D007688 6.0e-94 348.6 448 52.9
MD09G1263800 Malus domestica HOM05D006243 ORTHO05D007688 2.3e-93 346.7 451 54.5
TWI53G0799 Tripterygium wilfordii HOM05D006243 ORTHO05D007688 1.1e-92 344.4 440 54.8
TPR.G8275 Trifolium pratense HOM05D006243 ORTHO05D007688 2.1e-91 340.1 285 69.8
Oeu012257.1 Olea europaea HOM05D006243 ORTHO05D007688 6.2e-91 338.6 389 58.6
Duzib133G1335 Durio zibethinus HOM05D006243 ORTHO05D007688 1.8e-90 337.0 444 55.0
Rhsim10G0177000 Rhododendron simsii HOM05D006243 ORTHO05D007688 9.8e-89 331.3 443 52.6
ClCG05G011500 Citrullus lanatus HOM05D006243 ORTHO05D007688 1.1e-87 327.8 450 52.9
Actinidia06497 Actinidia chinensis HOM05D006243 ORTHO05D007688 5.4e-87 325.5 373 59.2
Cc07_g13520 Coffea canephora HOM05D006243 ORTHO05D007688 5.4e-87 325.5 413 53.5
CAN.G222.23 Capsicum annuum HOM05D006243 ORTHO05D007688 6.0e-86 322.0 386 57.0
Gorai.001G088700 Gossypium raimondii HOM05D006243 ORTHO05D007688 1.0e-85 321.2 439 53.1
Gohir.A07G078300 Gossypium hirsutum HOM05D006243 ORTHO05D007688 1.3e-85 320.9 439 53.1
MSTRG.23392 Avicennia marina HOM05D006243 ORTHO05D007688 1.1e-84 317.8 395 55.4
COL.COLO4_10159 Corchorus olitorius HOM05D006243 ORTHO05D007688 1.5e-84 317.4 481 49.5
Gohir.D07G083100 Gossypium hirsutum HOM05D006243 ORTHO05D007688 1.5e-84 317.4 439 52.8
Oeu032326.2 Olea europaea HOM05D006243 ORTHO05D007688 1.5e-84 317.4 387 56.1
SalBow3G2874 Salvia bowleyana HOM05D006243 ORTHO05D007688 5.6e-84 315.5 423 52.2
EL10Ac2g03168 Beta vulgaris HOM05D006243 ORTHO05D007688 1.2e-83 314.3 375 56.8
PSO017G3733 Papaver somniferum HOM05D006243 ORTHO05D007688 1.6e-83 313.9 441 50.8
vmacro07692 Vaccinium macrocarpon HOM05D006243 ORTHO05D007688 2.8e-83 313.2 481 46.8
Solyc11g011170.2 Solanum lycopersicum HOM05D006243 ORTHO05D007688 3.6e-83 312.8 410 54.6
AUR62038703 Chenopodium quinoa HOM05D006243 ORTHO05D007688 6.2e-83 312.0 385 55.3
AUR62018213 Chenopodium quinoa HOM05D006243 ORTHO05D007688 1.1e-82 311.2 385 54.8
Sc10g0004760 Simmondsia chinensis HOM05D006243 ORTHO05D007688 2.3e-82 310.1 450 51.1
Sopen11g005930 Solanum pennellii HOM05D006243 ORTHO05D007688 2.3e-82 310.1 410 54.1
MELO3C020192.2 Cucumis melo HOM05D006243 ORTHO05D007688 3.1e-82 309.7 450 50.9
PGSC0003DMG402015686 Solanum tuberosum HOM05D006243 ORTHO05D007688 5.2e-82 308.9 418 53.1
Aqoxy3G00051 Aquilegia oxysepala HOM05D006243 ORTHO05D007688 1.5e-81 307.4 452 49.6
VMungo0647G1427 Vigna mungo HOM05D006243 ORTHO05D007688 5.8e-81 305.4 241 73.4
CsaV3_3G020810 Cucumis sativus L. HOM05D006243 ORTHO05D007688 2.2e-80 303.5 450 51.6
Aa31LG2G3000 Aethionema arabicum HOM05D006243 ORTHO05D007688 2.9e-80 303.1 438 53.4
PSO478G0940 Papaver somniferum HOM05D006243 ORTHO05D007688 2.9e-80 303.1 441 49.7
THA.LOC104805617 Tarenaya hassleriana HOM05D006243 ORTHO05D007688 8.4e-80 301.6 436 54.1
Migut.H02264 Erythranthe guttata HOM05D006243 ORTHO05D007688 4.1e-79 299.3 372 56.5
BcaB03g15275 Brassica carinata HOM05D006243 ORTHO05D007688 2.7e-78 296.6 438 52.5
AT1G66330 Arabidopsis thaliana HOM05D006243 ORTHO05D007688 1.3e-77 294.3 427 52.5
CARHR058210 Cardamine hirsuta HOM05D006243 ORTHO05D007688 1.3e-77 294.3 355 58.6
Sp5g21350 Schrenkiella parvula HOM05D006243 ORTHO05D007688 2.3e-77 293.5 431 52.4
Carub.0002s1234 Capsella rubella HOM05D006243 ORTHO05D007688 3.0e-77 293.1 329 60.8
Peaxi162Scf00305g00613 Petunia axillaris HOM05D006243 ORTHO05D007688 1.5e-76 290.8 377 54.4
AL2G24050 Arabidopsis lyrata HOM05D006243 ORTHO05D007688 1.9e-76 290.4 301 65.1
Lj4A263G87 Lonicera japonica HOM05D006243 ORTHO05D007688 1.9e-76 290.4 312 62.5
BraA02t06418Z Brassica rapa HOM05D006243 ORTHO05D007688 2.5e-76 290.0 357 58.8
BraA07t30960Z Brassica rapa HOM05D006243 ORTHO05D007688 3.3e-76 289.7 357 57.7
BcaB05g24167 Brassica carinata HOM05D006243 ORTHO05D007688 4.3e-76 289.3 345 58.3
DCAR_014173 Daucus carota HOM05D006243 ORTHO05D007688 1.2e-75 287.7 367 54.8
BcaC03g14742 Brassica carinata HOM05D006243 ORTHO05D007688 1.6e-75 287.3 354 58.5
BolC2t08324H Brassica oleracea HOM05D006243 ORTHO05D007688 1.6e-75 287.3 354 58.5
Lsat_1_v5_gn_3_64500 Lactuca sativa HOM05D006243 ORTHO05D007688 3.6e-75 286.2 381 51.4
ATR0317G069 Amborella trichopoda HOM05D006243 ORTHO05D007688 6.2e-75 285.4 420 49.0
A07p33290 Brassica napus HOM05D006243 ORTHO05D007688 8.1e-75 285.0 359 57.9
BcaC08g46068 Brassica carinata HOM05D006243 ORTHO05D007688 1.1e-74 284.6 359 57.7
HanXRQChr13g0418351 Helianthus annuus HOM05D006243 ORTHO05D007688 1.2e-73 281.2 353 55.2
C06p39620 Brassica napus HOM05D006243 ORTHO05D007688 2.6e-73 280.0 360 57.5
BolC6t39055H Brassica oleracea HOM05D006243 ORTHO05D007688 2.6e-73 280.0 360 57.5
ECA246G3278 Erigeron canadensis HOM05D006243 ORTHO05D007688 5.8e-73 278.9 355 55.5
A02p13590 Brassica napus HOM05D006243 ORTHO05D007688 9.9e-73 278.1 348 58.6
C02p21930 Brassica napus HOM05D006243 ORTHO05D007688 9.9e-73 278.1 345 58.0
CDE04G1800 Ceratophyllum demersum HOM05D006243 ORTHO05D007688 2.9e-72 276.6 451 48.3
Hund13108 Selenicereus undatus HOM05D006243 ORTHO05D007688 4.9e-72 275.8 283 59.0
Os05g0148700 Oryza sativa ssp. japonica HOM05D006243 ORTHO05D007688 7.1e-71 271.9 369 52.8
PGR004G2672 Punica granatum HOM05D006243 ORTHO05D007688 3.5e-70 269.6 404 52.5
unitig_736.g22596 Utricularia gibba HOM05D006243 ORTHO05D007688 7.8e-70 268.5 237 64.1
Zm00001eb165460 Zea mays HOM05D006243 ORTHO05D007688 1.5e-68 264.2 363 52.9
Nitab4.5_0000201g0240 Nicotiana tabacum HOM05D006243 ORTHO05D007688 5.6e-68 262.3 356 53.7
SGA_v2.0_scaffold108G30955 Striga asiatica HOM05D006243 ORTHO05D007688 3.6e-67 259.6 343 54.5
HPP92_027416 Vanilla planifolia HOM05D006243 ORTHO05D007688 1.8e-66 257.3 409 49.9
SEGI_26344 Sequoiadendron giganteum HOM05D006243 ORTHO05D007688 1.5e-65 254.2 410 48.5
Nitab4.5_0009518g0020 Nicotiana tabacum HOM05D006243 ORTHO05D007688 2.5e-60 236.9 334 52.4
Sed0013436 Sechium edule HOM05D006243 ORTHO05D007688 2.0e-57 227.3 381 48.3
Actinidia17213 Actinidia chinensis HOM05D006243 ORTHO05D007688 2.1e-54 217.2 136 83.1
Ah.10g032360 Amaranthus hybridus HOM05D006243 ORTHO05D007688 3.5e-54 216.5 136 81.6
VMungo0647G1521 Vigna mungo HOM05D006243 ORTHO05D007688 2.3e-53 213.8 124 91.1
MD17G1258600 Malus domestica HOM05D006243 ORTHO05D007688 2.5e-52 210.3 210 61.4
Thhalv10018612m.g Eutrema salsugineum HOM05D006243 ORTHO05D007688 1.7e-48 197.6 293 53.9
Mapoly0055s0114 Marchantia polymorpha HOM05D006243 ORTHO05D007688 6.0e-46 189.1 392 39.0
AagrBONN_evm.TU.Sc2ySwM_117.2468 Anthoceros agrestis HOM05D006243 ORTHO05D007688 7.4e-44 182.2 240 45.0
Dinv28209 Davidia involucrata HOM05D006243 ORTHO05D007688 1.8e-42 177.6 260 52.3
Pp3c16_1710 Physcomitrium patens HOM05D006243 ORTHO05D007688 4.1e-42 176.4 308 44.2
Pp3c25_7980 Physcomitrium patens HOM05D006243 ORTHO05D007688 1.3e-40 171.4 225 45.3
Pp3c5_8230 Physcomitrium patens HOM05D006243 ORTHO05D007688 8.5e-40 168.7 305 44.3
CBR_g27960 Chara braunii HOM05D006243 ORTHO05D007688 1.1e-34 151.8 184 46.2
SMO238G0021 Selaginella moellendorffii HOM05D006243 ORTHO05D007688 2.6e-33 147.1 236 41.1
QL02p058075 Quercus lobata HOM05D006243 ORTHO05D007688 2.9e-32 143.7 236 47.9
RcHm_v2.0_Chr7g0216651 Rosa chinensis HOM05D006243 ORTHO05D007688 1.5e-28 131.3 77 89.6
Lsat_1_v5_gn_2_20381 Lactuca sativa HOM05D006243 ORTHO05D007688 1.3e-24 118.2 118 57.6
Lsat_1_v5_gn_9_50281 Lactuca sativa HOM05D006243 ORTHO05D007688 1.6e-17 94.7 60 78.3
TPR.G28257 Trifolium pratense HOM05D006243 ORTHO05D007688 3.6e-14 83.6 59 71.2
Actinidia17214 Actinidia chinensis HOM05D006243 ORTHO05D007688 8.8e-13 79.0 157 45.9
Lsat_1_v5_gn_9_64341 Lactuca sativa HOM05D000326 ORTHO05D000312 5.3e-10 69.7 101 46.5
FAN28G0752 Fragaria x ananassa HOM05D006243 ORTHO05D007688 2.9e-08 63.9 112 34.8


User provided reference genes

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