Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_05814_v3 Cicer arietinum L. HOM05D006774 ORTHO05D008411 8.3e-237 823.5 488 100.0
Medtr7g113420 Medicago truncatula HOM05D006774 ORTHO05D008411 3.5e-187 658.7 429 79.0
Glyma.19G235000 Glycine max HOM05D006774 ORTHO05D008411 9.7e-161 570.9 427 69.8
Lj1g0013332 Lotus japonicus HOM05D006774 ORTHO05D008411 9.1e-159 564.3 388 74.5
Glyma.03G237400 Glycine max HOM05D006774 ORTHO05D008411 1.4e-156 557.0 429 68.1
TPR.G33221 Trifolium pratense HOM05D006774 ORTHO05D008411 1.0e-154 550.8 348 81.6
Lalb_Chr18g0045661 Lupinus albus HOM05D006774 ORTHO05D008411 3.3e-153 545.8 424 68.9
arahy.Tifrunner.gnm1.ann1.ST8CS6 Arachis hypogaea HOM05D006774 ORTHO05D008411 3.7e-152 542.3 424 67.5
arahy.Tifrunner.gnm1.ann1.V1E923 Arachis hypogaea HOM05D006774 ORTHO05D008411 3.7e-152 542.3 424 68.2
Phvul.006G091800 Phaseolus vulgaris HOM05D006774 ORTHO05D008411 3.2e-148 529.3 389 70.7
VMungo0540G2441 Vigna mungo HOM05D006774 ORTHO05D008411 7.2e-148 528.1 387 68.5
Psat0s3041g0040 Pisum sativum HOM05D006774 ORTHO05D008411 2.3e-146 523.1 331 79.5
Prupe.6G324900 Prunus persica HOM05D006774 ORTHO05D008411 2.5e-140 503.1 427 62.5
CiPaw.10G139100 Carya illinoinensis HOM05D006774 ORTHO05D008411 1.2e-137 494.2 423 61.9
Cfa006593 Carpinus fangiana HOM05D006774 ORTHO05D008411 5.7e-137 491.9 424 61.8
QL03p007112 Quercus lobata HOM05D006774 ORTHO05D008411 3.1e-135 486.1 424 62.0
MD12G1218600 Malus domestica HOM05D006774 ORTHO05D008411 6.5e-133 478.4 421 60.8
CANSAT54G0432 Cannabis sativa HOM05D006774 ORTHO05D008411 8.5e-133 478.0 431 58.5
FAN02G0725 Fragaria x ananassa HOM05D006774 ORTHO05D008411 1.9e-132 476.9 427 57.1
FvH4_6g06010 Fragaria vesca HOM05D006774 ORTHO05D008411 3.2e-132 476.1 390 60.0
MD04G1204900 Malus domestica HOM05D006774 ORTHO05D008411 9.5e-132 474.6 426 60.1
RcHm_v2.0_Chr3g0454971 Rosa chinensis HOM05D006774 ORTHO05D008411 1.6e-131 473.8 387 62.3
CSS0019331 Camellia sinensis var. sinensis HOM05D006774 ORTHO05D008411 2.1e-131 473.4 422 59.5
Cpa.g.sc48.60 Carica papaya HOM05D006774 ORTHO05D008411 1.8e-130 470.3 423 59.1
Thecc.05G302500 Theobroma cacao HOM05D006774 ORTHO05D008411 3.0e-130 469.5 423 59.6
Duzib177G0798 Durio zibethinus HOM05D006774 ORTHO05D008411 6.8e-130 468.4 421 61.0
FAN09G1854 Fragaria x ananassa HOM05D006774 ORTHO05D008411 8.8e-130 468.0 390 59.5
TWI56G0431 Tripterygium wilfordii HOM05D006774 ORTHO05D008411 6.3e-128 461.8 423 56.7
FAN05G2700 Fragaria x ananassa HOM05D006774 ORTHO05D008411 8.3e-128 461.5 387 58.9
FAN05G0244 Fragaria x ananassa HOM05D006774 ORTHO05D008411 1.8e-127 460.3 391 59.1
Gohir.A13G107700 Gossypium hirsutum HOM05D006774 ORTHO05D008411 1.0e-125 454.5 421 57.2
Gorai.013G124300 Gossypium raimondii HOM05D006774 ORTHO05D008411 5.0e-125 452.2 421 57.0
ClCG03G016980 Citrullus lanatus HOM05D006774 ORTHO05D008411 1.1e-124 451.1 428 55.8
Duzib128G0809 Durio zibethinus HOM05D006774 ORTHO05D008411 2.1e-123 446.8 428 57.7
PGSC0003DMG400024686 Solanum tuberosum HOM05D006774 ORTHO05D008411 2.1e-123 446.8 419 56.6
TAR633G1323 Trochodendron aralioides HOM05D006774 ORTHO05D008411 2.8e-123 446.4 422 57.8
Sed0009699 Sechium edule HOM05D006774 ORTHO05D008411 8.0e-123 444.9 432 54.2
Haze_04191 Corylus avellana HOM05D006774 ORTHO05D008411 1.4e-122 444.1 357 60.8
MBI04_g29615_MAGBIO Magnolia biondii HOM05D006774 ORTHO05D008411 7.5e-121 438.3 422 52.8
CAN.G1034.42 Capsicum annuum HOM05D006774 ORTHO05D008411 1.7e-120 437.2 421 56.1
TWI12G1162 Tripterygium wilfordii HOM05D006774 ORTHO05D008411 8.3e-120 434.9 422 54.5
Sopen01g042680 Solanum pennellii HOM05D006774 ORTHO05D008411 1.4e-119 434.1 419 54.7
MELO3C015322.2 Cucumis melo HOM05D006774 ORTHO05D008411 1.8e-119 433.7 426 55.6
EL10Ac4g09357 Beta vulgaris HOM05D006774 ORTHO05D008411 3.2e-119 433.0 430 53.3
CsaV3_1G038960 Cucumis sativus L. HOM05D006774 ORTHO05D008411 7.0e-119 431.8 428 53.5
Ah.06g189400 Amaranthus hybridus HOM05D006774 ORTHO05D008411 1.7e-117 427.2 432 53.0
PSO478G4979 Papaver somniferum HOM05D006774 ORTHO05D008411 3.0e-117 426.4 424 54.0
Ciclev10001021m.g Citrus clementina HOM05D006774 ORTHO05D008411 5.0e-117 425.6 421 57.7
Potri.013G021500 Populus trichocarpa HOM05D006774 ORTHO05D008411 6.6e-117 425.2 422 56.6
Aqoxy5G00494 Aquilegia oxysepala HOM05D006774 ORTHO05D008411 1.9e-116 423.7 424 53.8
PSO782G5565 Papaver somniferum HOM05D006774 ORTHO05D008411 3.3e-116 422.9 427 52.7
Eucgr.C01256 Eucalyptus grandis HOM05D006774 ORTHO05D008411 5.6e-116 422.2 423 54.1
Hund07075 Selenicereus undatus HOM05D006774 ORTHO05D008411 3.6e-115 419.5 429 55.0
Atru.chr2.394 Acer truncatum HOM05D006774 ORTHO05D008411 4.7e-115 419.1 421 54.6
Migut.N02011 Erythranthe guttata HOM05D006774 ORTHO05D008411 1.8e-114 417.2 423 55.1
CSS0040526 Camellia sinensis var. sinensis HOM05D006774 ORTHO05D008411 2.9e-112 409.8 340 59.4
SpUn0004_0080 Schrenkiella parvula HOM05D006774 ORTHO05D008411 3.7e-112 409.5 418 53.1
SpUn0066_0030 Schrenkiella parvula HOM05D006774 ORTHO05D008411 3.7e-112 409.5 418 53.1
Sc09g0003160 Simmondsia chinensis HOM05D006774 ORTHO05D008411 1.4e-111 407.5 421 54.4
PGR031G3046 Punica granatum HOM05D006774 ORTHO05D008411 7.0e-111 405.2 422 53.1
THA.LOC104805877 Tarenaya hassleriana HOM05D006774 ORTHO05D008411 7.0e-111 405.2 423 53.0
COL.COLO4_13460 Corchorus olitorius HOM05D006774 ORTHO05D008411 1.6e-110 404.1 338 58.9
Cc02_g33360 Coffea canephora HOM05D006774 ORTHO05D008411 1.7e-109 400.6 425 51.5
GSVIVG01000080001 Vitis vinifera HOM05D006774 ORTHO05D008411 1.7e-109 400.6 374 58.3
Manes.09G167600 Manihot esculenta HOM05D006774 ORTHO05D008411 2.3e-109 400.2 420 52.4
MSTRG.20428 Avicennia marina HOM05D006774 ORTHO05D008411 3.0e-109 399.8 422 51.4
AT1G54990 Arabidopsis thaliana HOM05D006774 ORTHO05D008411 5.0e-109 399.1 415 52.5
BcaB04g20150 Brassica carinata HOM05D006774 ORTHO05D008411 5.0e-109 399.1 422 50.2
CARHR284430 Cardamine hirsuta HOM05D006774 ORTHO05D008411 1.5e-108 397.5 415 51.3
AL1G65540 Arabidopsis lyrata HOM05D006774 ORTHO05D008411 1.9e-108 397.1 415 52.3
Lsat_1_v5_gn_9_86761 Lactuca sativa HOM05D006774 ORTHO05D008411 1.9e-108 397.1 388 52.6
ATR0332G083 Amborella trichopoda HOM05D006774 ORTHO05D008411 2.5e-108 396.7 420 50.7
vmacro05013 Vaccinium macrocarpon HOM05D006774 ORTHO05D008411 1.6e-107 394.0 343 56.6
vmacro23279 Vaccinium macrocarpon HOM05D006774 ORTHO05D008411 1.6e-107 394.0 343 56.6
Thhalv10023440m.g Eutrema salsugineum HOM05D006774 ORTHO05D008411 3.6e-107 392.9 417 50.8
BraA01t02861Z Brassica rapa HOM05D006774 ORTHO05D008411 6.2e-107 392.1 417 50.4
HanXRQChr11g0338551 Helianthus annuus HOM05D006774 ORTHO05D008411 1.1e-106 391.3 420 50.0
Carub.0002s0819 Capsella rubella HOM05D006774 ORTHO05D008411 1.4e-106 391.0 416 51.2
A01p27210 Brassica napus HOM05D006774 ORTHO05D008411 4.0e-106 389.4 417 50.1
BcaC09g49602 Brassica carinata HOM05D006774 ORTHO05D008411 9.8e-105 384.8 417 49.6
C01p34610 Brassica napus HOM05D006774 ORTHO05D008411 1.4e-103 380.9 417 49.2
BolC1t03432H Brassica oleracea HOM05D006774 ORTHO05D008411 1.4e-103 380.9 417 49.2
RhsimUnG0226700 Rhododendron simsii HOM05D006774 ORTHO05D008411 1.6e-102 377.5 339 56.3
Nn1g02268 Nelumbo nucifera HOM05D006774 ORTHO05D008411 8.6e-101 371.7 338 55.3
Lj9C83T13 Lonicera japonica HOM05D006774 ORTHO05D008411 5.6e-100 369.0 341 55.7
Lj9C82T10 Lonicera japonica HOM05D006774 ORTHO05D008411 7.3e-100 368.6 341 55.4
Gohir.D13G110900 Gossypium hirsutum HOM05D006774 ORTHO05D008411 4.7e-99 365.9 346 56.6
Lj9C84T1 Lonicera japonica HOM05D006774 ORTHO05D008411 8.9e-98 361.7 333 55.3
AUR62000820 Chenopodium quinoa HOM05D006774 ORTHO05D008411 2.9e-96 356.7 402 44.8
Aa31LG2G11700 Aethionema arabicum HOM05D006774 ORTHO05D008411 6.4e-96 355.5 373 49.6
CDE05G2690 Ceratophyllum demersum HOM05D006774 ORTHO05D008411 8.6e-93 345.1 420 45.0
Sabra13G0023900 Salix brachista HOM05D006774 ORTHO05D008411 1.5e-92 344.4 452 44.9
ECA236G1211 Erigeron canadensis HOM05D000208 ORTHO05D000130 1.3e-88 331.3 341 50.4
Dinv40294 Davidia involucrata HOM05D006774 ORTHO05D008411 1.6e-78 297.7 250 60.0
AUR62005151 Chenopodium quinoa HOM05D006774 ORTHO05D008411 1.4e-74 284.6 267 50.2
unitig_736.g22755 Utricularia gibba HOM05D006774 ORTHO05D008411 1.1e-63 248.4 421 37.3
Actinidia05698 Actinidia chinensis HOM05D006774 ORTHO05D008411 2.6e-57 227.3 185 61.1
Os11g0544100 Oryza sativa ssp. japonica HOM05D006774 ORTHO05D008411 8.5e-56 222.2 359 38.4
PSO478G2742 Papaver somniferum HOM05D006774 ORTHO05D008411 4.6e-54 216.5 295 41.4
Pp3c11_22860 Physcomitrium patens HOM05D006774 ORTHO05D008411 5.1e-53 213.0 443 32.3
Zm00001eb197590 Zea mays HOM05D006774 ORTHO05D008411 6.3e-51 206.1 345 36.2
Atru.chr12.689 Acer truncatum HOM05D006774 ORTHO05D008411 1.3e-48 198.4 201 53.7
PSO782G1046 Papaver somniferum HOM05D006774 ORTHO05D008411 4.2e-47 193.4 295 40.0
SMO145G0196 Selaginella moellendorffii HOM05D006774 ORTHO05D008411 8.5e-32 142.5 365 30.1
Peaxi162Scf00037g00517 Petunia axillaris HOM05D006774 ORTHO05D008411 1.1e-31 142.1 416 30.3
HPP92_006104 Vanilla planifolia HOM05D006774 ORTHO05D008411 1.2e-30 138.7 204 38.7
Solyc01g099120.4 Solanum lycopersicum HOM05D006774 ORTHO05D008411 2.7e-25 120.9 102 56.9
Nitab4.5_0000137g0150 Nicotiana tabacum HOM05D006774 ORTHO05D008411 3.5e-25 120.6 105 56.2
Nitab4.5_0005541g0040 Nicotiana tabacum HOM05D006774 ORTHO05D008411 2.9e-24 117.5 104 55.8
CSS0005750 Camellia sinensis var. sinensis HOM05D006774 ORTHO05D008411 1.7e-08 65.1 80 60.0
VMungo1127G0243 Vigna mungo HOM05D006774 ORTHO05D008411 1.7e-08 65.1 62 50.0
SEGI_31760 Sequoiadendron giganteum HOM05D006774 ORTHO05D008411 2.3e-08 64.7 82 58.5
TAR362G0529 Trochodendron aralioides HOM05D006774 ORTHO05D008411 5.0e-08 63.5 64 53.1
Oeu035485.2 Olea europaea HOM05D006774 ORTHO05D001341 4.7e-06 57.0 82 39.0


User provided reference genes

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