Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_05793_v3 Cicer arietinum L. HOM05D004142 ORTHO05D005411 8.2e-129 463.8 240 100.0
Ca_01556_v3 Cicer arietinum L. HOM05D004142 ORTHO05D005411 1.1e-101 373.6 207 95.2
Psat2g043640 Pisum sativum HOM05D004142 ORTHO05D005411 3.2e-88 328.9 239 74.5
TPR.G8874 Trifolium pratense HOM05D004142 ORTHO05D005411 3.0e-86 322.4 226 76.1
Glyma.02G245400 Glycine max HOM05D004142 ORTHO05D005411 1.2e-84 317.0 224 75.4
Phvul.008G235900 Phaseolus vulgaris HOM05D004142 ORTHO05D005411 3.6e-84 315.5 215 76.3
VMungo0647G1269 Vigna mungo HOM05D004142 ORTHO05D005411 1.2e-82 310.5 228 73.2
Medtr5g078780 Medicago truncatula HOM05D004142 ORTHO05D005411 1.3e-81 307.0 218 75.7
Glyma.14G215500 Glycine max HOM05D004142 ORTHO05D005411 2.2e-81 306.2 227 72.2
Lalb_Chr04g0251341 Lupinus albus HOM05D004142 ORTHO05D005411 1.1e-77 293.9 210 70.5
arahy.Tifrunner.gnm1.ann1.FRA838 Arachis hypogaea HOM05D004142 ORTHO05D005411 3.9e-70 268.9 238 62.6
arahy.Tifrunner.gnm1.ann1.52DH7S Arachis hypogaea HOM05D004142 ORTHO05D005411 1.1e-67 260.8 238 61.3
Dinv14174 Davidia involucrata HOM05D004142 ORTHO05D005411 3.1e-67 259.2 204 64.7
Prupe.8G180000 Prunus persica HOM05D004142 ORTHO05D005411 2.9e-65 252.7 205 63.4
LjContig00141g0017492 Lotus japonicus HOM05D004142 ORTHO05D005411 6.4e-65 251.5 228 62.3
RcHm_v2.0_Chr6g0280901 Rosa chinensis HOM05D004142 ORTHO05D005411 2.1e-63 246.5 228 55.7
FvH4_2g16780 Fragaria vesca HOM05D004142 ORTHO05D005411 7.8e-63 244.6 228 57.0
FAN24G0393 Fragaria x ananassa HOM05D004142 ORTHO05D005411 7.8e-63 244.6 228 57.0
MD10G1141700 Malus domestica HOM05D004142 ORTHO05D005411 1.3e-62 243.8 205 61.0
QL11p056391 Quercus lobata HOM05D004142 ORTHO05D005411 3.0e-62 242.7 216 58.8
Ciclev10028022m.g Citrus clementina HOM05D004142 ORTHO05D005411 5.1e-62 241.9 229 56.8
vmacro02340 Vaccinium macrocarpon HOM05D004142 ORTHO05D005411 1.5e-61 240.4 198 62.1
Potri.009G168100 Populus trichocarpa HOM05D004142 ORTHO05D005411 5.6e-61 238.4 216 57.4
TWI75G0433 Tripterygium wilfordii HOM05D004142 ORTHO05D005411 4.7e-60 235.3 214 58.4
Atru.chr3.3247 Acer truncatum HOM05D004142 ORTHO05D005411 6.2e-60 235.0 216 56.5
CSS0035317 Camellia sinensis var. sinensis HOM05D004142 ORTHO05D005411 6.2e-60 235.0 215 57.7
Sabra09G0130600 Salix brachista HOM05D004142 ORTHO05D005852 1.1e-59 234.2 216 56.9
GSVIVG01004114001 Vitis vinifera HOM05D004142 ORTHO05D005411 1.4e-59 233.8 209 58.9
Cfa005371 Carpinus fangiana HOM05D004142 ORTHO05D005411 2.4e-59 233.0 206 59.7
Solyc10g074560.2 Solanum lycopersicum HOM05D004142 ORTHO05D005411 2.4e-59 233.0 215 54.9
Manes.04G066800 Manihot esculenta HOM05D004142 ORTHO05D005411 5.2e-59 231.9 199 60.8
Sopen10g027050 Solanum pennellii HOM05D004142 ORTHO05D005411 5.2e-59 231.9 215 54.0
Duzib052G0377 Durio zibethinus HOM05D004142 ORTHO05D005411 8.9e-59 231.1 225 57.3
CANSAT25G0210 Cannabis sativa HOM05D004142 ORTHO05D005411 1.5e-58 230.3 207 59.9
Haze_02000 Corylus avellana HOM05D004142 ORTHO05D005411 2.0e-58 229.9 212 57.5
Thecc.02G146100 Theobroma cacao HOM05D004142 ORTHO05D005411 3.4e-58 229.2 210 58.6
CSS0014725 Camellia sinensis var. sinensis HOM05D004142 ORTHO05D005411 5.8e-58 228.4 206 57.3
Rhsim11G0198100 Rhododendron simsii HOM05D004142 ORTHO05D005411 9.9e-58 227.6 198 59.1
COL.COLO4_34310 Corchorus olitorius HOM05D004142 ORTHO05D005411 1.3e-57 227.3 206 60.2
TWI31G1182 Tripterygium wilfordii HOM05D004142 ORTHO05D005411 1.7e-57 226.9 197 57.9
Eucgr.G01885 Eucalyptus grandis HOM05D004142 ORTHO05D005411 2.2e-57 226.5 228 51.8
arahy.Tifrunner.gnm1.ann1.0H97XI Arachis hypogaea HOM05D004142 ORTHO05D005411 3.8e-57 225.7 199 62.8
CSS0002990 Camellia sinensis var. sinensis HOM05D004142 ORTHO05D005411 4.9e-57 225.3 206 56.8
Sed0023655 Sechium edule HOM05D004142 ORTHO05D005411 1.4e-56 223.8 196 58.2
Oeu037462.1 Olea europaea HOM05D004142 ORTHO05D005411 1.9e-56 223.4 209 57.4
Peaxi162Scf01986g00004 Petunia axillaris HOM05D004142 ORTHO05D005411 2.4e-56 223.0 210 55.7
ClCG02G003400 Citrullus lanatus HOM05D004142 ORTHO05D005411 3.2e-56 222.6 199 58.8
Actinidia20577 Actinidia chinensis HOM05D004142 ORTHO05D005411 4.2e-56 222.2 204 56.9
CAN.G765.24 Capsicum annuum HOM05D004142 ORTHO05D005411 5.4e-56 221.9 210 54.8
Gorai.013G064000 Gossypium raimondii HOM05D004142 ORTHO05D005411 5.4e-56 221.9 210 58.6
Gohir.D13G057300 Gossypium hirsutum HOM05D004142 ORTHO05D005411 7.1e-56 221.5 210 58.1
Actinidia17993 Actinidia chinensis HOM05D004142 ORTHO05D005411 2.1e-55 219.9 218 56.0
Gohir.A13G065000 Gossypium hirsutum HOM05D004142 ORTHO05D005411 2.1e-55 219.9 210 57.6
PGR042G3440 Punica granatum HOM05D004142 ORTHO05D005411 4.6e-55 218.8 195 57.4
Cpa.g.sc60.19 Carica papaya HOM05D004142 ORTHO05D005411 6.0e-55 218.4 213 57.3
DCAR_005486 Daucus carota HOM05D004142 ORTHO05D005411 7.8e-55 218.0 210 57.6
TAR633G0693 Trochodendron aralioides HOM05D004142 ORTHO05D005411 1.3e-54 217.2 206 55.8
MELO3C013248.2 Cucumis melo HOM05D004142 ORTHO05D005411 2.3e-54 216.5 196 59.7
CiPaw.06G115400 Carya illinoinensis HOM05D004142 ORTHO05D005411 3.9e-54 215.7 214 54.2
AL3G50110 Arabidopsis lyrata HOM05D004142 ORTHO05D005411 6.6e-54 214.9 215 55.3
CsaV3_7G001920 Cucumis sativus L. HOM05D004142 ORTHO05D005411 8.7e-54 214.5 185 60.5
Thhalv10022610m.g Eutrema salsugineum HOM05D004142 ORTHO05D005411 8.7e-54 214.5 226 51.8
Lj5C171T17 Lonicera japonica HOM05D004142 ORTHO05D005411 8.7e-54 214.5 259 47.9
SGA_v2.0_scaffold98G29302 Striga asiatica HOM05D004142 ORTHO05D005411 8.7e-54 214.5 201 56.2
Carub.0003s3119 Capsella rubella HOM05D004142 ORTHO05D005411 4.3e-53 212.2 212 54.2
CARHR293590 Cardamine hirsuta HOM05D004142 ORTHO05D005411 9.6e-53 211.1 218 53.2
Migut.B01359 Erythranthe guttata HOM05D004142 ORTHO05D005411 2.8e-52 209.5 210 55.7
SalBow5G1400 Salvia bowleyana HOM05D004142 ORTHO05D005411 2.8e-52 209.5 191 57.1
Aa31LG8G14620 Aethionema arabicum HOM05D004142 ORTHO05D005411 3.6e-52 209.1 226 51.3
MSTRG.27614 Avicennia marina HOM05D004142 ORTHO05D005411 3.6e-52 209.1 184 58.2
Sp3g30590 Schrenkiella parvula HOM05D004142 ORTHO05D005411 3.6e-52 209.1 225 52.0
Hund06363 Selenicereus undatus HOM05D004142 ORTHO05D005411 2.4e-51 206.5 206 54.4
BcaB03g16472 Brassica carinata HOM05D004142 ORTHO05D005411 3.1e-51 206.1 221 52.0
BcaC04g22983 Brassica carinata HOM05D004142 ORTHO05D005411 1.2e-50 204.1 230 50.4
SalBow5G4664 Salvia bowleyana HOM05D004142 ORTHO05D005411 1.2e-50 204.1 191 57.1
C09p13280 Brassica napus HOM05D004142 ORTHO05D005411 2.6e-50 203.0 238 49.6
BolC9t54221H Brassica oleracea HOM05D004142 ORTHO05D005411 2.6e-50 203.0 238 49.6
EL10Ac9g21530 Beta vulgaris HOM05D004142 ORTHO05D005411 1.3e-49 200.7 218 48.6
BcaB07g31738 Brassica carinata HOM05D004142 ORTHO05D005411 1.3e-49 200.7 218 51.8
Aqoxy6G01597 Aquilegia oxysepala HOM05D004142 ORTHO05D005411 2.2e-49 199.9 204 51.0
Sc08g0002210 Simmondsia chinensis HOM05D004142 ORTHO05D005411 2.2e-49 199.9 214 53.3
A07p03800 Brassica napus HOM05D004142 ORTHO05D005411 3.8e-49 199.1 239 48.5
FAN15G2670 Fragaria x ananassa HOM05D004142 ORTHO05D005411 6.4e-49 198.4 213 52.1
AT2G17250 Arabidopsis thaliana HOM05D004142 ORTHO05D005411 8.4e-49 198.0 207 53.1
BraA07t28174Z Brassica rapa HOM05D004142 ORTHO05D005411 1.9e-48 196.8 243 47.3
A09p11250 Brassica napus HOM05D004142 ORTHO05D005411 7.1e-48 194.9 227 49.8
BraA09t36766Z Brassica rapa HOM05D004142 ORTHO05D005411 2.1e-47 193.4 226 49.1
Ah.05g178840 Amaranthus hybridus HOM05D004142 ORTHO05D005411 2.7e-47 193.0 204 52.5
Cc09_g10830 Coffea canephora HOM05D004142 ORTHO05D005411 6.0e-47 191.8 213 52.1
Eucgr.H04975 Eucalyptus grandis HOM05D004142 ORTHO05D005411 1.5e-45 187.2 173 54.9
CDE05G3311 Ceratophyllum demersum HOM05D004142 ORTHO05D005411 5.6e-45 185.3 191 48.7
SHI03796 Sapria himalayana HOM05D004142 ORTHO05D005411 5.6e-45 185.3 192 46.4
ECA233G5375 Erigeron canadensis HOM05D004142 ORTHO05D005411 2.8e-44 183.0 206 49.5
HanXRQChr16g0515111 Helianthus annuus HOM05D004142 ORTHO05D005411 2.8e-44 183.0 209 51.2
HanXRQChr09g0239911 Helianthus annuus HOM05D004142 ORTHO05D005411 4.0e-43 179.1 199 52.3
MD05G1138800 Malus domestica HOM05D004142 ORTHO05D005411 2.0e-42 176.8 203 51.2
PSO541G0415 Papaver somniferum HOM05D004142 ORTHO05D005411 3.4e-42 176.0 218 44.0
Nn5g31006 Nelumbo nucifera HOM05D004142 ORTHO05D005411 5.8e-42 175.3 173 53.8
HPP92_025663 Vanilla planifolia HOM05D004142 ORTHO05D005411 9.9e-42 174.5 224 44.2
PSO675G0945 Papaver somniferum HOM05D004142 ORTHO05D005411 1.1e-40 171.0 218 43.6
AUR62013175 Chenopodium quinoa HOM05D004142 ORTHO05D005411 1.9e-40 170.2 221 46.6
THA.LOC104819692 Tarenaya hassleriana HOM05D004142 ORTHO05D005411 9.3e-40 167.9 227 45.8
Nitab4.5_0005657g0020 Nicotiana tabacum HOM05D004142 ORTHO05D005411 2.7e-39 166.4 209 45.9
unitig_578.g16758 Utricularia gibba HOM05D004142 ORTHO05D005411 2.7e-39 166.4 211 46.9
Zm00001eb428130 Zea mays HOM05D004142 ORTHO05D005411 3.0e-38 162.9 210 39.0
Lsat_1_v5_gn_5_183861 Lactuca sativa HOM05D004142 ORTHO05D005411 8.7e-38 161.4 170 52.9
TAR318G0001 Trochodendron aralioides HOM05D004142 ORTHO05D005411 4.3e-37 159.1 149 56.4
GSVIVG01004442001 Vitis vinifera HOM05D004142 ORTHO05D005411 5.6e-37 158.7 145 57.2
Os04g0585300 Oryza sativa ssp. japonica HOM05D004142 ORTHO05D005411 1.4e-35 154.1 200 41.0
TAR381G0855 Trochodendron aralioides HOM05D004142 ORTHO05D005411 3.1e-35 152.9 201 47.8
ATR0807G091 Amborella trichopoda HOM05D004142 ORTHO05D005411 1.0e-33 147.9 200 42.0
Psat3g160080 Pisum sativum HOM05D004142 ORTHO05D005411 1.7e-33 147.1 160 55.6
Nitab4.5_0001700g0140 Nicotiana tabacum HOM05D004142 ORTHO05D005411 1.2e-31 141.0 169 48.5
BcaC06g36246 Brassica carinata HOM05D004142 ORTHO05D005411 2.3e-30 136.7 211 40.8
BolC7t41018H Brassica oleracea HOM05D004142 ORTHO05D005411 5.1e-30 135.6 200 42.5
BcaB07g31740 Brassica carinata HOM05D004142 ORTHO05D005411 6.7e-30 135.2 230 39.6
CSS0025136 Camellia sinensis var. sinensis HOM05D004142 ORTHO05D005411 3.7e-28 129.4 166 46.4
C07p06050 Brassica napus HOM05D004142 ORTHO05D005411 1.4e-27 127.5 209 39.2
BcaB07g31739 Brassica carinata HOM05D004142 ORTHO05D005411 2.4e-27 126.7 211 41.2
Atru.chr5.3556 Acer truncatum HOM05D004142 ORTHO05D005411 2.6e-26 123.2 179 40.2
Mapoly0043s0054 Marchantia polymorpha HOM05D004142 ORTHO05D005411 3.0e-22 109.8 217 35.5
CSS0034003 Camellia sinensis var. sinensis HOM05D004142 ORTHO05D005411 1.5e-21 107.5 216 36.1
MD11G1014400 Malus domestica HOM05D004142 ORTHO05D005411 3.3e-21 106.3 80 61.2
BcaB07g31742 Brassica carinata HOM05D004142 ORTHO05D005411 3.7e-20 102.8 165 41.2
CAN.G397.37 Capsicum annuum HOM05D004142 ORTHO05D005411 6.3e-20 102.1 179 36.3
SEGI_29991 Sequoiadendron giganteum HOM05D004142 ORTHO05D031210 1.7e-17 94.0 175 34.9
MD11G1014300 Malus domestica HOM05D004142 ORTHO05D005411 1.1e-16 91.3 73 65.8
BcaC04g22984 Brassica carinata HOM05D004142 ORTHO05D005411 2.5e-16 90.1 71 66.2
AUR62010174 Chenopodium quinoa HOM05D004142 ORTHO05D005411 4.7e-15 85.9 77 54.5
Pp3c9_12610 Physcomitrium patens HOM05D004142 ORTHO05D005411 1.4e-14 84.3 233 29.2
AagrBONN_evm.TU.Sc2ySwM_228.5327 Anthoceros agrestis HOM05D004142 ORTHO05D005411 2.3e-14 83.6 217 30.9
RcHm_v2.0_Chr1g0336401 Rosa chinensis HOM05D004142 ORTHO05D005411 8.5e-09 65.1 49 59.2
RcHm_v2.0_Chr7g0239681 Rosa chinensis HOM05D004142 ORTHO05D005411 3.2e-08 63.2 48 58.3
SEGI_00997 Sequoiadendron giganteum HOM05D004142 ORTHO05D031210 3.9e-06 56.2 120 34.2
Mapoly0118s0038 Marchantia polymorpha HOM05D004142 ORTHO05D254901 8.8e-06 55.1 159 26.4


User provided reference genes

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